RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 NEO1Q92859 1461 aa17.61■□□□□ 0.41
SHROOM1-203ENST00000378679 DDX58O95786 925 aaKnown RBP17.61■□□□□ 0.41
SHROOM1-203ENST00000378679 ATP10AO60312 1499 aa17.6■□□□□ 0.41
SHROOM1-203ENST00000378679 AIMP1Q12904 312 aaKnown RBP17.6■□□□□ 0.41
SHROOM1-203ENST00000378679 GPATCH3Q96I76 525 aa17.6■□□□□ 0.41
SHROOM1-203ENST00000378679 PARD3Q8TEW0 1356 aa17.6■□□□□ 0.41
SHROOM1-203ENST00000378679 ATF7IPQ6VMQ6 1270 aa17.6■□□□□ 0.41
SHROOM1-203ENST00000378679 TTC37Q6PGP7 1564 aa17.6■□□□□ 0.41
SHROOM1-203ENST00000378679 SLC4A2P04920 1241 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 CT47B1P0C2W7 299 aaPredicted RBP17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 STRN4Q9NRL3 753 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 YEATS2Q9ULM3 1422 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 MAST1Q9Y2H9 1570 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 ANKRD36BQ8N2N9 1353 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 NSD2O96028 1365 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 NINLQ9Y2I6 1382 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 GCC2Q8IWJ2 1684 aa17.59■□□□□ 0.41
SHROOM1-203ENST00000378679 CCDC30Q5VVM6 783 aa17.58■□□□□ 0.41
SHROOM1-203ENST00000378679 RILPL2Q969X0 211 aa17.58■□□□□ 0.41
SHROOM1-203ENST00000378679 PRDM11Q9NQV5 511 aa17.58■□□□□ 0.41
SHROOM1-203ENST00000378679 CFAP65Q6ZU64 1925 aaKnown RBP17.58■□□□□ 0.41
SHROOM1-203ENST00000378679 TRIM44Q96DX7 344 aaPredicted RBP17.58■□□□□ 0.4
SHROOM1-203ENST00000378679 ARID3AQ99856 593 aa17.58■□□□□ 0.4
SHROOM1-203ENST00000378679 DUSP27Q5VZP5 1158 aa17.58■□□□□ 0.4
SHROOM1-203ENST00000378679 NPATQ14207 1427 aa17.58■□□□□ 0.4
SHROOM1-203ENST00000378679 TATP17735 454 aaPredicted RBP17.57■□□□□ 0.4
SHROOM1-203ENST00000378679 MCM10Q7L590 875 aa17.57■□□□□ 0.4
SHROOM1-203ENST00000378679 HDGFL1Q5TGJ6 251 aa17.57■□□□□ 0.4
SHROOM1-203ENST00000378679 KCNH5Q8NCM2 988 aa17.57■□□□□ 0.4
SHROOM1-203ENST00000378679 BRPF3Q9ULD4 1205 aa17.57■□□□□ 0.4
SHROOM1-203ENST00000378679 C20orf194Q5TEA3 1177 aa17.56■□□□□ 0.4
SHROOM1-203ENST00000378679 MYO5CQ9NQX4 1742 aa17.56■□□□□ 0.4
SHROOM1-203ENST00000378679 C1orf115Q9H7X2 142 aa17.56■□□□□ 0.4
SHROOM1-203ENST00000378679 GTF2E1P29083 439 aaPredicted RBP17.56■□□□□ 0.4
SHROOM1-203ENST00000378679 PUS7Q96PZ0 661 aaKnown RBP17.56■□□□□ 0.4
SHROOM1-203ENST00000378679 MIS18AQ9NYP9 233 aa17.56■□□□□ 0.4
SHROOM1-203ENST00000378679 NCKAP5LQ9HCH0 1330 aa17.55■□□□□ 0.4
SHROOM1-203ENST00000378679 TOM1L2Q6ZVM7 507 aa17.54■□□□□ 0.4
SHROOM1-203ENST00000378679 RIC3Q7Z5B4 369 aa17.54■□□□□ 0.4
SHROOM1-203ENST00000378679 ZRANB1Q9UGI0 708 aa17.54■□□□□ 0.4
SHROOM1-203ENST00000378679 RARSP54136 660 aaKnown RBP17.54■□□□□ 0.4
SHROOM1-203ENST00000378679 ASXL1Q8IXJ9 1541 aa17.54■□□□□ 0.4
SHROOM1-203ENST00000378679 SSH1Q8WYL5 1049 aa17.54■□□□□ 0.4
SHROOM1-203ENST00000378679 EIF2AK4Q9P2K8 1649 aaKnown RBP17.53■□□□□ 0.4
SHROOM1-203ENST00000378679 UBTFL1P0CB47 393 aaPredicted RBP17.53■□□□□ 0.4
SHROOM1-203ENST00000378679 USHBP1Q8N6Y0 703 aa17.53■□□□□ 0.4
SHROOM1-203ENST00000378679 MVPQ14764 893 aaKnown RBP17.53■□□□□ 0.4
SHROOM1-203ENST00000378679 TTC21BQ7Z4L5 1316 aa17.52■□□□□ 0.4
SHROOM1-203ENST00000378679 HSP90AB2PQ58FF8 381 aa17.52■□□□□ 0.4
SHROOM1-203ENST00000378679 PDZRN3Q9UPQ7 1066 aa17.52■□□□□ 0.4
SHROOM1-203ENST00000378679 YTHDC2Q9H6S0 1430 aaKnown RBP17.52■□□□□ 0.39
SHROOM1-203ENST00000378679 COL17A1Q9UMD9 1497 aaPredicted RBP17.51■□□□□ 0.39
SHROOM1-203ENST00000378679 ZNF428Q96B54 188 aa17.51■□□□□ 0.39
SHROOM1-203ENST00000378679 SPATA31E1Q6ZUB1 1445 aa17.51■□□□□ 0.39
SHROOM1-203ENST00000378679 ABCC1P33527 1531 aa17.51■□□□□ 0.39
SHROOM1-203ENST00000378679 FOXD4L1Q9NU39 408 aa17.51■□□□□ 0.39
SHROOM1-203ENST00000378679 ADGBQ8N7X0 1667 aa17.51■□□□□ 0.39
SHROOM1-203ENST00000378679 ZCCHC11Q5TAX3 1644 aaKnown RBP17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 GNAI3P08754 354 aa17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 KCNA6P17658 529 aa17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 DDX54Q8TDD1 881 aaKnown RBP17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 NOL8Q76FK4 1167 aaKnown RBP17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 GNAT3A8MTJ3 354 aa17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 POLKQ9UBT6 870 aa17.5■□□□□ 0.39
SHROOM1-203ENST00000378679 ABCC11Q96J66 1382 aa17.49■□□□□ 0.39
SHROOM1-203ENST00000378679 PPIP5K1Q6PFW1 1433 aa17.49■□□□□ 0.39
SHROOM1-203ENST00000378679 TBX22Q9Y458 520 aa17.49■□□□□ 0.39
SHROOM1-203ENST00000378679 SKAP1Q86WV1 359 aa17.49■□□□□ 0.39
SHROOM1-203ENST00000378679 KRT28Q7Z3Y7 464 aa17.48■□□□□ 0.39
SHROOM1-203ENST00000378679 PREX2Q70Z35 1606 aa17.48■□□□□ 0.39
SHROOM1-203ENST00000378679 A0A1W2PP64 1363 aa17.48■□□□□ 0.39
SHROOM1-203ENST00000378679 G3BP1Q13283 466 aaKnown RBP eCLIP17.48■□□□□ 0.39
SHROOM1-203ENST00000378679 TMEM57Q8N5G2 664 aa17.48■□□□□ 0.39
SHROOM1-203ENST00000378679 GSE1Q14687 1217 aa17.47■□□□□ 0.39
SHROOM1-203ENST00000378679 SPG7Q9UQ90 795 aa17.47■□□□□ 0.39
SHROOM1-203ENST00000378679 IFIT2P09913 472 aaKnown RBP17.47■□□□□ 0.39
SHROOM1-203ENST00000378679 IFT57Q9NWB7 429 aa17.47■□□□□ 0.39
SHROOM1-203ENST00000378679 NKTRP30414 1462 aaKnown RBP17.46■□□□□ 0.39
SHROOM1-203ENST00000378679 FAM83GA6ND36 823 aa17.46■□□□□ 0.39
SHROOM1-203ENST00000378679 MLH3Q9UHC1 1453 aa17.46■□□□□ 0.39
SHROOM1-203ENST00000378679 AEBP2Q6ZN18 517 aaPredicted RBP17.46■□□□□ 0.39
SHROOM1-203ENST00000378679 SURF6O75683 361 aaKnown RBP17.46■□□□□ 0.39
SHROOM1-203ENST00000378679 POLR3AO14802 1390 aaPredicted RBP17.45■□□□□ 0.38
SHROOM1-203ENST00000378679 LRPPRCP42704 1394 aaKnown RBP17.45■□□□□ 0.38
SHROOM1-203ENST00000378679 BTBD11A6QL63 1104 aa17.45■□□□□ 0.38
SHROOM1-203ENST00000378679 CABP4P57796 275 aa17.45■□□□□ 0.38
SHROOM1-203ENST00000378679 ST18O60284 1047 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 PLA2R1Q13018 1463 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 GNAI2P04899 355 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 HSP90AB4PQ58FF6 505 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 CADPS2Q86UW7 1296 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 NUTM2BA6NNL0 878 aaPredicted RBP17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 NUTM2EB1AL46 878 aaPredicted RBP17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 HSPA2P54652 639 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 NUTM2AQ8IVF1 878 aaPredicted RBP17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 DIAPH3Q9NSV4 1193 aa17.44■□□□□ 0.38
SHROOM1-203ENST00000378679 REC8O95072 547 aa17.43■□□□□ 0.38
SHROOM1-203ENST00000378679 GOLGA6L4A6NEF3 574 aa17.43■□□□□ 0.38
SHROOM1-203ENST00000378679 GBP4Q96PP9 640 aa17.43■□□□□ 0.38
SHROOM1-203ENST00000378679 CCT4P50991 539 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms