RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 CLSTN1O94985 981 aa18.25■□□□□ 0.51
NPHP4-201ENST00000378156 NINLQ9Y2I6 1382 aa18.25■□□□□ 0.51
NPHP4-201ENST00000378156 RNF20Q5VTR2 975 aa18.24■□□□□ 0.51
NPHP4-201ENST00000378156 NUDT16Q96DE0 195 aaKnown RBP18.24■□□□□ 0.51
NPHP4-201ENST00000378156 NUP153P49790 1475 aaKnown RBP18.24■□□□□ 0.51
NPHP4-201ENST00000378156 APPP05067 770 aa18.23■□□□□ 0.51
NPHP4-201ENST00000378156 SYNE3Q6ZMZ3 975 aa18.23■□□□□ 0.51
NPHP4-201ENST00000378156 CT47B1P0C2W7 299 aaPredicted RBP18.23■□□□□ 0.51
NPHP4-201ENST00000378156 MEX3CQ5U5Q3 659 aaKnown RBP18.22■□□□□ 0.51
NPHP4-201ENST00000378156 TATP17735 454 aaPredicted RBP18.22■□□□□ 0.51
NPHP4-201ENST00000378156 RRS1Q15050 365 aaKnown RBP18.22■□□□□ 0.51
NPHP4-201ENST00000378156 IL27Q8NEV9 243 aa18.22■□□□□ 0.51
NPHP4-201ENST00000378156 FCHSD2O94868 740 aa18.22■□□□□ 0.51
NPHP4-201ENST00000378156 TMPOP42166 694 aaKnown RBP18.22■□□□□ 0.51
NPHP4-201ENST00000378156 IDI1Q13907 227 aa18.22■□□□□ 0.51
NPHP4-201ENST00000378156 VPS37DQ86XT2 251 aa18.22■□□□□ 0.51
NPHP4-201ENST00000378156 SURF6O75683 361 aaKnown RBP18.21■□□□□ 0.51
NPHP4-201ENST00000378156 SLC4A2P04920 1241 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 AKAP17AQ02040 695 aaKnown RBP18.21■□□□□ 0.51
NPHP4-201ENST00000378156 MCTP1Q6DN14 999 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 WAPLQ7Z5K2 1190 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 NEUROD6Q96NK8 337 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 HDGFL1Q5TGJ6 251 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 TRAK2O60296 914 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 RARSP54136 660 aaKnown RBP18.21■□□□□ 0.51
NPHP4-201ENST00000378156 CLASRPQ8N2M8 674 aaKnown RBP18.21■□□□□ 0.51
NPHP4-201ENST00000378156 NUCB2P80303 420 aa18.21■□□□□ 0.51
NPHP4-201ENST00000378156 NOC3LQ8WTT2 800 aaKnown RBP18.21■□□□□ 0.51
NPHP4-201ENST00000378156 CFAP43Q8NDM7 1665 aa18.2■□□□□ 0.5
NPHP4-201ENST00000378156 ZNF530Q6P9A1 599 aaPredicted RBP18.2■□□□□ 0.5
NPHP4-201ENST00000378156 GCC1Q96CN9 775 aa18.2■□□□□ 0.5
NPHP4-201ENST00000378156 TCOF1Q13428 1488 aaKnown RBP18.19■□□□□ 0.5
NPHP4-201ENST00000378156 TRDNQ13061 729 aa18.19■□□□□ 0.5
NPHP4-201ENST00000378156 STRN4Q9NRL3 753 aa18.19■□□□□ 0.5
NPHP4-201ENST00000378156 NOL10Q9BSC4 688 aaKnown RBP18.19■□□□□ 0.5
NPHP4-201ENST00000378156 FBXO31Q5XUX0 539 aaPredicted RBP18.18■□□□□ 0.5
NPHP4-201ENST00000378156 TMEM57Q8N5G2 664 aa18.18■□□□□ 0.5
NPHP4-201ENST00000378156 NKTRP30414 1462 aaKnown RBP18.17■□□□□ 0.5
NPHP4-201ENST00000378156 RALGAPBQ86X10 1494 aa18.17■□□□□ 0.5
NPHP4-201ENST00000378156 CPLX1O14810 134 aa18.17■□□□□ 0.5
NPHP4-201ENST00000378156 THUMPD2Q9BTF0 503 aaKnown RBP18.17■□□□□ 0.5
NPHP4-201ENST00000378156 MARCH6O60337 910 aa18.17■□□□□ 0.5
NPHP4-201ENST00000378156 RAPGEF6Q8TEU7 1601 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 ATP10BO94823 1461 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 GNAI2P04899 355 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 AMOTL1Q8IY63 956 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 CTTNBP2Q8WZ74 1663 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 FANCAO15360 1455 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 SCAF11Q99590 1463 aaKnown RBP18.16■□□□□ 0.5
NPHP4-201ENST00000378156 CHD1LQ86WJ1 897 aa18.16■□□□□ 0.5
NPHP4-201ENST00000378156 SSH1Q8WYL5 1049 aa18.15■□□□□ 0.5
NPHP4-201ENST00000378156 TPM3P06753 285 aa18.15■□□□□ 0.5
NPHP4-201ENST00000378156 TOM1L2Q6ZVM7 507 aa18.14■□□□□ 0.5
NPHP4-201ENST00000378156 MRE11P49959 708 aa18.14■□□□□ 0.49
NPHP4-201ENST00000378156 AEBP2Q6ZN18 517 aaPredicted RBP18.14■□□□□ 0.49
NPHP4-201ENST00000378156 LRPPRCP42704 1394 aaKnown RBP18.14■□□□□ 0.49
NPHP4-201ENST00000378156 NFE2L2Q16236 605 aa18.14■□□□□ 0.49
NPHP4-201ENST00000378156 DHX29Q7Z478 1369 aaKnown RBP18.13■□□□□ 0.49
NPHP4-201ENST00000378156 CCT4P50991 539 aaKnown RBP18.13■□□□□ 0.49
NPHP4-201ENST00000378156 RBM42Q9BTD8 480 aaKnown RBP18.13■□□□□ 0.49
NPHP4-201ENST00000378156 PRDM11Q9NQV5 511 aa18.13■□□□□ 0.49
NPHP4-201ENST00000378156 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-201ENST00000378156 ZNF428Q96B54 188 aa18.13■□□□□ 0.49
NPHP4-201ENST00000378156 DENND4BO75064 1496 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-201ENST00000378156 SETQ01105 290 aaPredicted RBP18.13■□□□□ 0.49
NPHP4-201ENST00000378156 GPS2Q13227 327 aa18.13■□□□□ 0.49
NPHP4-201ENST00000378156 TRIM29Q14134 588 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 CNTROBQ8N137 903 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 SPG7Q9UQ90 795 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 SMC3Q9UQE7 1217 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 WASHC4Q2M389 1173 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 CREBRFQ8IUR6 639 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 NEK4P51957 841 aa18.12■□□□□ 0.49
NPHP4-201ENST00000378156 XPCQ01831 940 aaPredicted RBP18.12■□□□□ 0.49
NPHP4-201ENST00000378156 CABP4P57796 275 aa18.11■□□□□ 0.49
NPHP4-201ENST00000378156 SRCIN1Q9C0H9 1055 aa18.11■□□□□ 0.49
NPHP4-201ENST00000378156 DDX54Q8TDD1 881 aaKnown RBP18.11■□□□□ 0.49
NPHP4-201ENST00000378156 FSD1Q9BTV5 496 aa18.11■□□□□ 0.49
NPHP4-201ENST00000378156 PRAG1Q86YV5 1406 aa18.11■□□□□ 0.49
NPHP4-201ENST00000378156 VPS37CA5D8V6 355 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-201ENST00000378156 PARD3Q8TEW0 1356 aa18.1■□□□□ 0.49
NPHP4-201ENST00000378156 PPP6R1Q9UPN7 881 aa18.1■□□□□ 0.49
NPHP4-201ENST00000378156 RABEP1Q15276 862 aa18.1■□□□□ 0.49
NPHP4-201ENST00000378156 GOLGA6L19H0YKK7 550 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 VPS53Q5VIR6 699 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 RALYLQ86SE5 291 aaKnown RBP18.09■□□□□ 0.49
NPHP4-201ENST00000378156 TESK2Q96S53 571 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 ZC3H6P61129 1189 aaKnown RBP18.09■□□□□ 0.49
NPHP4-201ENST00000378156 FAM43AQ8N2R8 423 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 KCNH5Q8NCM2 988 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 NOS1P29475 1434 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 BECN2A8MW95 431 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 IGHDP01880 384 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 RBM33Q96EV2 1170 aaKnown RBP18.09■□□□□ 0.49
NPHP4-201ENST00000378156 C14orf93Q9H972 538 aaKnown RBP18.09■□□□□ 0.49
NPHP4-201ENST00000378156 WDR62O43379 1518 aa18.09■□□□□ 0.49
NPHP4-201ENST00000378156 CEBPAP49715 358 aaPredicted RBP18.08■□□□□ 0.49
NPHP4-201ENST00000378156 KIF6Q6ZMV9 814 aa18.08■□□□□ 0.49
NPHP4-201ENST00000378156 NFXL1Q6ZNB6 911 aa18.08■□□□□ 0.48
NPHP4-201ENST00000378156 ZNF771Q7L3S4 317 aaPredicted RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms