RNA–Protein interactions for RNA: ENST00000378133.4

PCDHA1-201, Transcript of protocadherin alpha 1, humanhuman

BASIC

Gene PCDHA1, Length 2,726 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-201ENST00000378133 NSD2O96028 1365 aa21.08■□□□□ 0.97
PCDHA1-201ENST00000378133 U2SURPO15042 1029 aaKnown RBP21.08■□□□□ 0.96
PCDHA1-201ENST00000378133 SRPK2P78362 688 aaKnown RBP21.08■□□□□ 0.96
PCDHA1-201ENST00000378133 TSR2Q969E8 191 aaKnown RBP21.08■□□□□ 0.96
PCDHA1-201ENST00000378133 GGNBP2Q9H3C7 697 aa21.08■□□□□ 0.96
PCDHA1-201ENST00000378133 ARHGEF28Q8N1W1 1705 aaKnown RBP21.07■□□□□ 0.96
PCDHA1-201ENST00000378133 ARXQ96QS3 562 aa21.06■□□□□ 0.96
PCDHA1-201ENST00000378133 RWDD1Q9H446 243 aaPredicted RBP21.06■□□□□ 0.96
PCDHA1-201ENST00000378133 NEXMIFQ5QGS0 1516 aa21.06■□□□□ 0.96
PCDHA1-201ENST00000378133 VSIG10Q8N0Z9 540 aa21.06■□□□□ 0.96
PCDHA1-201ENST00000378133 NLRP1Q9C000 1473 aa21.05■□□□□ 0.96
PCDHA1-201ENST00000378133 A0A1W2PP64 1363 aa21.05■□□□□ 0.96
PCDHA1-201ENST00000378133 MVPQ14764 893 aaKnown RBP21.05■□□□□ 0.96
PCDHA1-201ENST00000378133 NCBP3Q53F19 620 aaKnown RBP21.05■□□□□ 0.96
PCDHA1-201ENST00000378133 ZKSCAN2Q63HK3 967 aa21.05■□□□□ 0.96
PCDHA1-201ENST00000378133 AGLP35573 1532 aa21.04■□□□□ 0.96
PCDHA1-201ENST00000378133 TRHP20396 242 aaPredicted RBP21.04■□□□□ 0.96
PCDHA1-201ENST00000378133 FTSJ3Q8IY81 847 aaKnown RBP21.04■□□□□ 0.96
PCDHA1-201ENST00000378133 TBC1D2Q9BYX2 928 aa21.04■□□□□ 0.96
PCDHA1-201ENST00000378133 GOLGA6L3A6NEY3 463 aa21.03■□□□□ 0.96
PCDHA1-201ENST00000378133 DZIP1LQ8IYY4 767 aaKnown RBP21.03■□□□□ 0.96
PCDHA1-201ENST00000378133 TBC1D32Q96NH3 1257 aa21.03■□□□□ 0.96
PCDHA1-201ENST00000378133 PLEKHF1Q96S99 279 aa21.03■□□□□ 0.96
PCDHA1-201ENST00000378133 XRCC6P12956 609 aaKnown RBP eCLIP21.03■□□□□ 0.96
PCDHA1-201ENST00000378133 EXOSC9Q06265 439 aaKnown RBP21.03■□□□□ 0.96
PCDHA1-201ENST00000378133 TMPOP42166 694 aaKnown RBP21.02■□□□□ 0.96
PCDHA1-201ENST00000378133 PIK3C2BO00750 1634 aa21.02■□□□□ 0.96
PCDHA1-201ENST00000378133 MINK1Q8N4C8 1332 aaPredicted RBP21.02■□□□□ 0.96
PCDHA1-201ENST00000378133 SMC4Q9NTJ3 1288 aa21.01■□□□□ 0.95
PCDHA1-201ENST00000378133 ABCC11Q96J66 1382 aa21.01■□□□□ 0.95
PCDHA1-201ENST00000378133 TRIM35Q9UPQ4 493 aa21.01■□□□□ 0.95
PCDHA1-201ENST00000378133 FYB1O15117 783 aa21■□□□□ 0.95
PCDHA1-201ENST00000378133 GLIPR1L2Q4G1C9 344 aa20.99■□□□□ 0.95
PCDHA1-201ENST00000378133 SPRYD3Q8NCJ5 442 aa20.99■□□□□ 0.95
PCDHA1-201ENST00000378133 PRAM1Q96QH2 718 aa20.99■□□□□ 0.95
PCDHA1-201ENST00000378133 SLC52A1Q9NWF4 448 aa20.99■□□□□ 0.95
PCDHA1-201ENST00000378133 ADGRB2O60241 1585 aa20.99■□□□□ 0.95
PCDHA1-201ENST00000378133 GZF1Q9H116 711 aaPredicted RBP20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 CT47B1P0C2W7 299 aaPredicted RBP20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 SSH1Q8WYL5 1049 aa20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 ARHGAP31Q2M1Z3 1444 aa20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 FSD2A1L4K1 749 aa20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 TRIM27P14373 513 aa20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 MCM4P33991 863 aa20.98■□□□□ 0.95
PCDHA1-201ENST00000378133 TERF2IPQ9NYB0 399 aa20.97■□□□□ 0.95
PCDHA1-201ENST00000378133 PNNQ9H307 717 aaKnown RBP20.96■□□□□ 0.95
PCDHA1-201ENST00000378133 RIPK4P57078 832 aa20.96■□□□□ 0.95
PCDHA1-201ENST00000378133 NAP1L5Q96NT1 182 aaPredicted RBP20.96■□□□□ 0.95
PCDHA1-201ENST00000378133 ITPRIPQ8IWB1 547 aa20.95■□□□□ 0.94
PCDHA1-201ENST00000378133 PANK2Q9BZ23 570 aa20.95■□□□□ 0.94
PCDHA1-201ENST00000378133 ZFYVE9O95405 1425 aa20.94■□□□□ 0.94
PCDHA1-201ENST00000378133 MLECQ14165 292 aa20.94■□□□□ 0.94
PCDHA1-201ENST00000378133 NOB1Q9ULX3 412 aaKnown RBP20.94■□□□□ 0.94
PCDHA1-201ENST00000378133 CLTCQ00610 1675 aaKnown RBP20.94■□□□□ 0.94
PCDHA1-201ENST00000378133 ZMYM3Q14202 1370 aa20.93■□□□□ 0.94
PCDHA1-201ENST00000378133 ATAD2Q6PL18 1390 aa20.93■□□□□ 0.94
PCDHA1-201ENST00000378133 ATF7IPQ6VMQ6 1270 aa20.93■□□□□ 0.94
PCDHA1-201ENST00000378133 CLCN1P35523 988 aa20.93■□□□□ 0.94
PCDHA1-201ENST00000378133 PREX1Q8TCU6 1659 aa20.93■□□□□ 0.94
PCDHA1-201ENST00000378133 COL3A1P02461 1466 aaPredicted RBP20.93■□□□□ 0.94
PCDHA1-201ENST00000378133 DIAPH1O60610 1272 aaKnown RBP20.92■□□□□ 0.94
PCDHA1-201ENST00000378133 MYO5BQ9ULV0 1848 aa20.92■□□□□ 0.94
PCDHA1-201ENST00000378133 DDX19BQ9UMR2 479 aa20.92■□□□□ 0.94
PCDHA1-201ENST00000378133 PTPRMP28827 1452 aa20.92■□□□□ 0.94
PCDHA1-201ENST00000378133 CDK19Q9BWU1 502 aa20.91■□□□□ 0.94
PCDHA1-201ENST00000378133 CABP1Q9NZU7 370 aa20.91■□□□□ 0.94
PCDHA1-201ENST00000378133 CD163L1Q9NR16 1453 aa20.91■□□□□ 0.94
PCDHA1-201ENST00000378133 TRAK2O60296 914 aa20.91■□□□□ 0.94
PCDHA1-201ENST00000378133 FBXO31Q5XUX0 539 aaPredicted RBP20.91■□□□□ 0.94
PCDHA1-201ENST00000378133 CHMP5Q9NZZ3 219 aa20.91■□□□□ 0.94
PCDHA1-201ENST00000378133 HDGFL2Q7Z4V5 671 aaPredicted RBP20.9■□□□□ 0.94
PCDHA1-201ENST00000378133 YTHDC2Q9H6S0 1430 aaKnown RBP20.9■□□□□ 0.94
PCDHA1-201ENST00000378133 FBLN1P23142 703 aa20.9■□□□□ 0.94
PCDHA1-201ENST00000378133 TMEM57Q8N5G2 664 aa20.9■□□□□ 0.94
PCDHA1-201ENST00000378133 IL16Q14005 1332 aa20.9■□□□□ 0.94
PCDHA1-201ENST00000378133 HDAC1Q13547 482 aaPredicted RBP20.89■□□□□ 0.93
PCDHA1-201ENST00000378133 PPP6R1Q9UPN7 881 aa20.88■□□□□ 0.93
PCDHA1-201ENST00000378133 MRE11P49959 708 aa20.87■□□□□ 0.93
PCDHA1-201ENST00000378133 C22orf23Q9BZE7 217 aa20.87■□□□□ 0.93
PCDHA1-201ENST00000378133 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.86■□□□□ 0.93
PCDHA1-201ENST00000378133 TMEM131LA2VDJ0 1609 aa20.86■□□□□ 0.93
PCDHA1-201ENST00000378133 MFAP1P55081 439 aaKnown RBP20.86■□□□□ 0.93
PCDHA1-201ENST00000378133 STAG3Q9UJ98 1225 aa20.85■□□□□ 0.93
PCDHA1-201ENST00000378133 PNPLA6Q8IY17 1366 aa20.85■□□□□ 0.93
PCDHA1-201ENST00000378133 MED14O60244 1454 aa20.85■□□□□ 0.93
PCDHA1-201ENST00000378133 HSP90AA1P07900 732 aaKnown RBP20.85■□□□□ 0.93
PCDHA1-201ENST00000378133 ZBTB40Q9NUA8 1239 aa20.85■□□□□ 0.93
PCDHA1-201ENST00000378133 IPO8O15397 1037 aaKnown RBP20.84■□□□□ 0.93
PCDHA1-201ENST00000378133 SMC5Q8IY18 1101 aa20.84■□□□□ 0.93
PCDHA1-201ENST00000378133 FCHSD2O94868 740 aa20.84■□□□□ 0.93
PCDHA1-201ENST00000378133 PRKAR2BP31323 418 aa20.83■□□□□ 0.93
PCDHA1-201ENST00000378133 HSP90AA2PQ14568 343 aaPredicted RBP20.83■□□□□ 0.93
PCDHA1-201ENST00000378133 KIF16BQ96L93 1317 aa20.83■□□□□ 0.92
PCDHA1-201ENST00000378133 ANKRD26Q9UPS8 1709 aa20.82■□□□□ 0.92
PCDHA1-201ENST00000378133 WAPLQ7Z5K2 1190 aa20.82■□□□□ 0.92
PCDHA1-201ENST00000378133 GRPEL1Q9HAV7 217 aa20.82■□□□□ 0.92
PCDHA1-201ENST00000378133 POLKQ9UBT6 870 aa20.82■□□□□ 0.92
PCDHA1-201ENST00000378133 DDX11L8A8MPP1 907 aa20.8■□□□□ 0.92
PCDHA1-201ENST00000378133 HMOX1P09601 288 aa20.8■□□□□ 0.92
PCDHA1-201ENST00000378133 ALDH1L2Q3SY69 923 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms