RNA–Protein interactions for RNA: ENST00000378043.8

BEST1-201, Transcript of bestrophin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BEST1, Length 2,740 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST1-201ENST00000378043 ARHGEF40Q8TER5 1519 aa14.02□□□□□ -0.17
BEST1-201ENST00000378043 DAXXQ9UER7 740 aaPredicted RBP14.02□□□□□ -0.17
BEST1-201ENST00000378043 MVPQ14764 893 aaKnown RBP14.01□□□□□ -0.17
BEST1-201ENST00000378043 POGKQ9P215 609 aa14.01□□□□□ -0.17
BEST1-201ENST00000378043 EXOSC9Q06265 439 aaKnown RBP14.01□□□□□ -0.17
BEST1-201ENST00000378043 PNPLA6Q8IY17 1366 aa14.01□□□□□ -0.17
BEST1-201ENST00000378043 ZKSCAN2Q63HK3 967 aa14□□□□□ -0.17
BEST1-201ENST00000378043 PDZRN3Q9UPQ7 1066 aa14□□□□□ -0.17
BEST1-201ENST00000378043 CT47B1P0C2W7 299 aaPredicted RBP14□□□□□ -0.17
BEST1-201ENST00000378043 CDK19Q9BWU1 502 aa14□□□□□ -0.17
BEST1-201ENST00000378043 KIF20BQ96Q89 1820 aa14□□□□□ -0.17
BEST1-201ENST00000378043 CABP1Q9NZU7 370 aa13.99□□□□□ -0.17
BEST1-201ENST00000378043 DZIP1LQ8IYY4 767 aaKnown RBP13.99□□□□□ -0.17
BEST1-201ENST00000378043 SSH1Q8WYL5 1049 aa13.99□□□□□ -0.17
BEST1-201ENST00000378043 TRIM27P14373 513 aa13.98□□□□□ -0.17
BEST1-201ENST00000378043 RWDD1Q9H446 243 aaPredicted RBP13.98□□□□□ -0.17
BEST1-201ENST00000378043 SMC4Q9NTJ3 1288 aa13.98□□□□□ -0.17
BEST1-201ENST00000378043 ZMYM3Q14202 1370 aa13.97□□□□□ -0.17
BEST1-201ENST00000378043 DIAPH1O60610 1272 aaKnown RBP13.97□□□□□ -0.17
BEST1-201ENST00000378043 FBLN1P23142 703 aa13.97□□□□□ -0.17
BEST1-201ENST00000378043 RIPK4P57078 832 aa13.97□□□□□ -0.17
BEST1-201ENST00000378043 IL16Q14005 1332 aa13.97□□□□□ -0.17
BEST1-201ENST00000378043 SETD1AO15047 1707 aaKnown RBP13.96□□□□□ -0.17
BEST1-201ENST00000378043 HDGFL2Q7Z4V5 671 aaPredicted RBP13.96□□□□□ -0.17
BEST1-201ENST00000378043 FTSJ3Q8IY81 847 aaKnown RBP13.96□□□□□ -0.17
BEST1-201ENST00000378043 CDC42BPGQ6DT37 1551 aa13.95□□□□□ -0.18
BEST1-201ENST00000378043 WAPLQ7Z5K2 1190 aa13.95□□□□□ -0.18
BEST1-201ENST00000378043 MAP2P11137 1827 aaKnown RBP13.95□□□□□ -0.18
BEST1-201ENST00000378043 LRRC7Q96NW7 1537 aa13.95□□□□□ -0.18
BEST1-201ENST00000378043 A2ML1A8K2U0 1454 aa13.95□□□□□ -0.18
BEST1-201ENST00000378043 FRAT2O75474 233 aaPredicted RBP13.94□□□□□ -0.18
BEST1-201ENST00000378043 CYB5RLQ6IPT4 315 aa13.94□□□□□ -0.18
BEST1-201ENST00000378043 ATF7IPQ6VMQ6 1270 aa13.94□□□□□ -0.18
BEST1-201ENST00000378043 NOB1Q9ULX3 412 aaKnown RBP13.94□□□□□ -0.18
BEST1-201ENST00000378043 RIMBP3CA6NJZ7 1639 aa13.94□□□□□ -0.18
BEST1-201ENST00000378043 RIMBP3BA6NNM3 1639 aa13.94□□□□□ -0.18
BEST1-201ENST00000378043 RIMBP3Q9UFD9 1639 aa13.94□□□□□ -0.18
BEST1-201ENST00000378043 DLC1Q96QB1 1528 aa13.93□□□□□ -0.18
BEST1-201ENST00000378043 GSE1Q14687 1217 aa13.93□□□□□ -0.18
BEST1-201ENST00000378043 POLKQ9UBT6 870 aa13.93□□□□□ -0.18
BEST1-201ENST00000378043 STAG3Q9UJ98 1225 aa13.93□□□□□ -0.18
BEST1-201ENST00000378043 TSPOAP1O95153 1857 aa13.93□□□□□ -0.18
BEST1-201ENST00000378043 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.93□□□□□ -0.18
BEST1-201ENST00000378043 FCHSD2O94868 740 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 TBC1D32Q96NH3 1257 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 RSPH6AQ9H0K4 717 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 HDAC1Q13547 482 aaPredicted RBP13.92□□□□□ -0.18
BEST1-201ENST00000378043 FAM135BQ49AJ0 1406 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 REREQ9P2R6 1566 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 ATP7BP35670 1465 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 SPATA31D1Q6ZQQ2 1576 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 FAM69CQ0P6D2 419 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 ITPRIPQ8IWB1 547 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 DDX19BQ9UMR2 479 aa13.92□□□□□ -0.18
BEST1-201ENST00000378043 AGLP35573 1532 aa13.91□□□□□ -0.18
BEST1-201ENST00000378043 DIP2BQ9P265 1576 aa13.91□□□□□ -0.18
BEST1-201ENST00000378043 TMEM57Q8N5G2 664 aa13.91□□□□□ -0.18
BEST1-201ENST00000378043 PRKAR2BP31323 418 aa13.91□□□□□ -0.18
BEST1-201ENST00000378043 RIMS2Q9UQ26 1411 aa13.9□□□□□ -0.18
BEST1-201ENST00000378043 PHACTR3Q96KR7 559 aa13.9□□□□□ -0.18
BEST1-201ENST00000378043 PNNQ9H307 717 aaKnown RBP13.9□□□□□ -0.18
BEST1-201ENST00000378043 ZBTB40Q9NUA8 1239 aa13.9□□□□□ -0.18
BEST1-201ENST00000378043 NRXN3Q9Y4C0 1643 aa13.9□□□□□ -0.18
BEST1-201ENST00000378043 SMC5Q8IY18 1101 aa13.89□□□□□ -0.19
BEST1-201ENST00000378043 IL27Q8NEV9 243 aa13.89□□□□□ -0.19
BEST1-201ENST00000378043 CPSF1Q10570 1443 aaKnown RBP13.89□□□□□ -0.19
BEST1-201ENST00000378043 PPP6R1Q9UPN7 881 aa13.89□□□□□ -0.19
BEST1-201ENST00000378043 KIF16BQ96L93 1317 aa13.88□□□□□ -0.19
BEST1-201ENST00000378043 ANTXR1Q9H6X2 564 aa13.88□□□□□ -0.19
BEST1-201ENST00000378043 PPIP5K1Q6PFW1 1433 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 HMOX1P09601 288 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 BECN1Q14457 450 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 ALDH1L2Q3SY69 923 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 EMILIN1Q9Y6C2 1016 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 THUMPD2Q9BTF0 503 aaKnown RBP13.87□□□□□ -0.19
BEST1-201ENST00000378043 ZRANB1Q9UGI0 708 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 METP08581 1390 aa13.87□□□□□ -0.19
BEST1-201ENST00000378043 NME9Q86XW9 330 aa13.86□□□□□ -0.19
BEST1-201ENST00000378043 TBC1D2Q9BYX2 928 aa13.86□□□□□ -0.19
BEST1-201ENST00000378043 UPF2Q9HAU5 1272 aaKnown RBP13.86□□□□□ -0.19
BEST1-201ENST00000378043 IPO8O15397 1037 aaKnown RBP13.86□□□□□ -0.19
BEST1-201ENST00000378043 NFE2L2Q16236 605 aa13.86□□□□□ -0.19
BEST1-201ENST00000378043 SLKQ9H2G2 1235 aaPredicted RBP13.86□□□□□ -0.19
BEST1-201ENST00000378043 DLG5Q8TDM6 1919 aa13.86□□□□□ -0.19
BEST1-201ENST00000378043 EDC4Q6P2E9 1401 aaKnown RBP13.86□□□□□ -0.19
BEST1-201ENST00000378043 WASLO00401 505 aaPredicted RBP13.85□□□□□ -0.19
BEST1-201ENST00000378043 IL13P35225 146 aa13.85□□□□□ -0.19
BEST1-201ENST00000378043 BRPF1P55201 1214 aaPredicted RBP13.85□□□□□ -0.19
BEST1-201ENST00000378043 NCKAP5LQ9HCH0 1330 aa13.85□□□□□ -0.19
BEST1-201ENST00000378043 VAMP4O75379 141 aa13.84□□□□□ -0.19
BEST1-201ENST00000378043 MLECQ14165 292 aa13.84□□□□□ -0.19
BEST1-201ENST00000378043 TSPYL6Q8N831 410 aa13.84□□□□□ -0.19
BEST1-201ENST00000378043 CPS1P31327 1500 aa13.84□□□□□ -0.19
BEST1-201ENST00000378043 CDK12Q9NYV4 1490 aaPredicted RBP13.84□□□□□ -0.19
BEST1-201ENST00000378043 MON2Q7Z3U7 1717 aa13.83□□□□□ -0.19
BEST1-201ENST00000378043 TXNDC2Q86VQ3 553 aa13.83□□□□□ -0.2
BEST1-201ENST00000378043 ZNF428Q96B54 188 aa13.83□□□□□ -0.2
BEST1-201ENST00000378043 ZNF853P0CG23 659 aa13.83□□□□□ -0.2
BEST1-201ENST00000378043 AATKQ6ZMQ8 1374 aa13.82□□□□□ -0.2
BEST1-201ENST00000378043 NUCB1Q02818 461 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms