RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 EID1Q9Y6B2 187 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 RUSC2Q8N2Y8 1516 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 RIPK4P57078 832 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 MVPQ14764 893 aaKnown RBP12.13□□□□□ -0.47
PTCH1-204ENST00000375290 C9orf78Q9NZ63 289 aaPredicted RBP12.13□□□□□ -0.47
PTCH1-204ENST00000375290 PLIN1O60240 522 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 PPP6R1Q9UPN7 881 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 NSD2O96028 1365 aa12.13□□□□□ -0.47
PTCH1-204ENST00000375290 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.12□□□□□ -0.47
PTCH1-204ENST00000375290 CEP57L1Q8IYX8 460 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 NOL10Q9BSC4 688 aaKnown RBP12.12□□□□□ -0.47
PTCH1-204ENST00000375290 AMPHP49418 695 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 CTR9Q6PD62 1173 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 ZBTB7CA1YPR0 619 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 G3BP1Q13283 466 aaKnown RBP eCLIP12.12□□□□□ -0.47
PTCH1-204ENST00000375290 FILIP1Q7Z7B0 1213 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 KIF3BO15066 747 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 SART3Q15020 963 aaKnown RBP12.12□□□□□ -0.47
PTCH1-204ENST00000375290 SYNJ2O15056 1496 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 GSDMDP57764 484 aa12.12□□□□□ -0.47
PTCH1-204ENST00000375290 CFTRP13569 1480 aa12.11□□□□□ -0.47
PTCH1-204ENST00000375290 KLHL34Q8N239 644 aa12.11□□□□□ -0.47
PTCH1-204ENST00000375290 RPAP2Q8IXW5 612 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-204ENST00000375290 SCAND2PQ9GZW5 306 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-204ENST00000375290 ZNHIT6Q9NWK9 470 aaKnown RBP12.11□□□□□ -0.47
PTCH1-204ENST00000375290 CDKL5O76039 1030 aa12.11□□□□□ -0.47
PTCH1-204ENST00000375290 SLC4A3P48751 1232 aa12.11□□□□□ -0.47
PTCH1-204ENST00000375290 RALYLQ86SE5 291 aaKnown RBP12.11□□□□□ -0.47
PTCH1-204ENST00000375290 TUBBP07437 444 aa12.11□□□□□ -0.47
PTCH1-204ENST00000375290 TXLNAP40222 546 aa12.11□□□□□ -0.47
PTCH1-204ENST00000375290 VPS37CA5D8V6 355 aaPredicted RBP12.11□□□□□ -0.47
PTCH1-204ENST00000375290 ALDH1L2Q3SY69 923 aa12.1□□□□□ -0.47
PTCH1-204ENST00000375290 PRKCSHP14314 528 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-204ENST00000375290 CLASRPQ8N2M8 674 aaKnown RBP12.1□□□□□ -0.47
PTCH1-204ENST00000375290 ATF7IPQ6VMQ6 1270 aa12.1□□□□□ -0.47
PTCH1-204ENST00000375290 KIF18AQ8NI77 898 aa12.1□□□□□ -0.47
PTCH1-204ENST00000375290 NCOA1Q15788 1441 aa12.1□□□□□ -0.47
PTCH1-204ENST00000375290 LRPPRCP42704 1394 aaKnown RBP12.1□□□□□ -0.47
PTCH1-204ENST00000375290 ANKRD30BQ9BXX2 1392 aa12.1□□□□□ -0.47
PTCH1-204ENST00000375290 TDRD9Q8NDG6 1382 aaKnown RBP12.1□□□□□ -0.47
PTCH1-204ENST00000375290 GOLGA6L10A0A0M3HER8 536 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 AMER1Q5JTC6 1135 aaPredicted RBP12.09□□□□□ -0.47
PTCH1-204ENST00000375290 FOXD4L1Q9NU39 408 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 EIF2AK4Q9P2K8 1649 aaKnown RBP12.09□□□□□ -0.47
PTCH1-204ENST00000375290 MICALCLQ6ZW33 695 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 C1orf141Q5JVX7 400 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 JAKMIP3Q5VZ66 844 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 BRPF3Q9ULD4 1205 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 TEFQ10587 303 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 ANKRD18AQ8IVF6 992 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 ERBINQ96RT1 1412 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 KLHL40Q2TBA0 621 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 TMCO3Q6UWJ1 677 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 RALGAPBQ86X10 1494 aa12.09□□□□□ -0.47
PTCH1-204ENST00000375290 PTPN23Q9H3S7 1636 aa12.08□□□□□ -0.47
PTCH1-204ENST00000375290 CCDC30Q5VVM6 783 aa12.08□□□□□ -0.48
PTCH1-204ENST00000375290 PODXL2Q9NZ53 605 aa12.08□□□□□ -0.48
PTCH1-204ENST00000375290 CCDC83Q8IWF9 413 aa12.08□□□□□ -0.48
PTCH1-204ENST00000375290 RPGRIP1LQ68CZ1 1315 aa12.08□□□□□ -0.48
PTCH1-204ENST00000375290 GTPBP4Q9BZE4 634 aaKnown RBP12.08□□□□□ -0.48
PTCH1-204ENST00000375290 CYP46A1Q9Y6A2 500 aa12.08□□□□□ -0.48
PTCH1-204ENST00000375290 SH2B1Q9NRF2 756 aaPredicted RBP12.08□□□□□ -0.48
PTCH1-204ENST00000375290 PRPF40AO75400 957 aaKnown RBP12.07□□□□□ -0.48
PTCH1-204ENST00000375290 STIM1Q13586 685 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 GAS2L2Q8NHY3 880 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 PPP2R1AP30153 589 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 IVLP07476 585 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 RPRD2Q5VT52 1461 aaKnown RBP12.07□□□□□ -0.48
PTCH1-204ENST00000375290 CCDC183Q5T5S1 534 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 SENP3-EIF4A1A0A087X0R7 540 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 UBXN4Q92575 508 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 TNMDQ9H2S6 317 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 ITSN2Q9NZM3 1697 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 NEK4P51957 841 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 PTPRGP23470 1445 aa12.07□□□□□ -0.48
PTCH1-204ENST00000375290 CAMSAP2Q08AD1 1489 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 UBTFL1P0CB47 393 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-204ENST00000375290 GRIN2BQ13224 1484 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 FAM193AP78312 1265 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 DNAJC2Q99543 621 aaKnown RBP12.06□□□□□ -0.48
PTCH1-204ENST00000375290 SRRTQ9BXP5 876 aaKnown RBP12.06□□□□□ -0.48
PTCH1-204ENST00000375290 LNPKQ9C0E8 428 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 GNAI2P04899 355 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 A6NNZ2 444 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 TUBB8Q3ZCM7 444 aa12.06□□□□□ -0.48
PTCH1-204ENST00000375290 GGT6Q6P531 493 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 CHD1LQ86WJ1 897 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 MARCH6O60337 910 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 PDZRN3Q9UPQ7 1066 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 FKBP5Q13451 457 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-204ENST00000375290 C9orf84Q5VXU9 1444 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 SHTN1A0MZ66 631 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 CLSTN1O94985 981 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 HNRNPMP52272 730 aaKnown RBP eCLIP12.05□□□□□ -0.48
PTCH1-204ENST00000375290 MAP3K11Q16584 847 aa12.05□□□□□ -0.48
PTCH1-204ENST00000375290 RBM25P49756 843 aaKnown RBP12.05□□□□□ -0.48
PTCH1-204ENST00000375290 NOL8Q76FK4 1167 aaKnown RBP12.05□□□□□ -0.48
PTCH1-204ENST00000375290 PCMTD1Q96MG8 357 aaPredicted RBP12.05□□□□□ -0.48
PTCH1-204ENST00000375290 KIF21AQ7Z4S6 1674 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms