RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CGNL1Q0VF96 1302 aa20.34■□□□□ 0.85
HMGA1-202ENST00000347617 NSD2O96028 1365 aa20.34■□□□□ 0.85
HMGA1-202ENST00000347617 CPS1P31327 1500 aa20.34■□□□□ 0.85
HMGA1-202ENST00000347617 CABP2Q9NPB3 220 aa20.33■□□□□ 0.84
HMGA1-202ENST00000347617 MINK1Q8N4C8 1332 aaPredicted RBP20.32■□□□□ 0.84
HMGA1-202ENST00000347617 SRPK2P78362 688 aaKnown RBP20.32■□□□□ 0.84
HMGA1-202ENST00000347617 NSD3Q9BZ95 1437 aa20.32■□□□□ 0.84
HMGA1-202ENST00000347617 SKAP1Q86WV1 359 aa20.31■□□□□ 0.84
HMGA1-202ENST00000347617 CDK19Q9BWU1 502 aa20.31■□□□□ 0.84
HMGA1-202ENST00000347617 DIP2AQ14689 1571 aa20.31■□□□□ 0.84
HMGA1-202ENST00000347617 SAFB2Q14151 953 aaKnown RBP eCLIP20.31■□□□□ 0.84
HMGA1-202ENST00000347617 PDE3AQ14432 1141 aa20.31■□□□□ 0.84
HMGA1-202ENST00000347617 TERF2IPQ9NYB0 399 aa20.31■□□□□ 0.84
HMGA1-202ENST00000347617 SETD1BQ9UPS6 1966 aaKnown RBP20.31■□□□□ 0.84
HMGA1-202ENST00000347617 RIMS1Q86UR5 1692 aaKnown RBP20.3■□□□□ 0.84
HMGA1-202ENST00000347617 CEP170BQ9Y4F5 1589 aaPredicted RBP20.29■□□□□ 0.84
HMGA1-202ENST00000347617 WAPLQ7Z5K2 1190 aa20.29■□□□□ 0.84
HMGA1-202ENST00000347617 E9PSI1 815 aa20.28■□□□□ 0.84
HMGA1-202ENST00000347617 EIF5BO60841 1220 aaKnown RBP20.28■□□□□ 0.84
HMGA1-202ENST00000347617 RGS3P49796 1198 aa20.27■□□□□ 0.84
HMGA1-202ENST00000347617 SENP3Q9H4L4 574 aaPredicted RBP20.27■□□□□ 0.84
HMGA1-202ENST00000347617 WASLO00401 505 aaPredicted RBP20.26■□□□□ 0.83
HMGA1-202ENST00000347617 PIK3R4Q99570 1358 aa20.26■□□□□ 0.83
HMGA1-202ENST00000347617 USP19O94966 1318 aa20.26■□□□□ 0.83
HMGA1-202ENST00000347617 ZNF142P52746 1687 aaPredicted RBP20.26■□□□□ 0.83
HMGA1-202ENST00000347617 HDGFL2Q7Z4V5 671 aaPredicted RBP20.24■□□□□ 0.83
HMGA1-202ENST00000347617 UPF2Q9HAU5 1272 aaKnown RBP20.24■□□□□ 0.83
HMGA1-202ENST00000347617 ATP7BP35670 1465 aa20.24■□□□□ 0.83
HMGA1-202ENST00000347617 A0A1W2PP64 1363 aa20.24■□□□□ 0.83
HMGA1-202ENST00000347617 POLR3AO14802 1390 aaPredicted RBP20.24■□□□□ 0.83
HMGA1-202ENST00000347617 MORC1Q86VD1 984 aa20.23■□□□□ 0.83
HMGA1-202ENST00000347617 CD163L1Q9NR16 1453 aa20.23■□□□□ 0.83
HMGA1-202ENST00000347617 ADGRB2O60241 1585 aa20.22■□□□□ 0.83
HMGA1-202ENST00000347617 PTCH1Q13635 1447 aa20.21■□□□□ 0.83
HMGA1-202ENST00000347617 ROBO2Q9HCK4 1378 aa20.21■□□□□ 0.83
HMGA1-202ENST00000347617 GLIPR1L2Q4G1C9 344 aa20.21■□□□□ 0.83
HMGA1-202ENST00000347617 PMFBP1Q8TBY8 1022 aa20.21■□□□□ 0.83
HMGA1-202ENST00000347617 ANKLE2Q86XL3 938 aa20.2■□□□□ 0.82
HMGA1-202ENST00000347617 PTPRUQ92729 1446 aa20.19■□□□□ 0.82
HMGA1-202ENST00000347617 CLUAP1Q96AJ1 413 aa20.19■□□□□ 0.82
HMGA1-202ENST00000347617 CABP1Q9NZU7 370 aa20.19■□□□□ 0.82
HMGA1-202ENST00000347617 CCDC61Q9Y6R9 512 aa20.18■□□□□ 0.82
HMGA1-202ENST00000347617 PLPPR3Q6T4P5 718 aa20.18■□□□□ 0.82
HMGA1-202ENST00000347617 SLC26A8Q96RN1 970 aa20.18■□□□□ 0.82
HMGA1-202ENST00000347617 AMOTL2Q9Y2J4 779 aa20.18■□□□□ 0.82
HMGA1-202ENST00000347617 CPSF1Q10570 1443 aaKnown RBP20.17■□□□□ 0.82
HMGA1-202ENST00000347617 ANTXR1Q9H6X2 564 aa20.17■□□□□ 0.82
HMGA1-202ENST00000347617 ISY1Q9ULR0 285 aaKnown RBP20.16■□□□□ 0.82
HMGA1-202ENST00000347617 NUDT16Q96DE0 195 aaKnown RBP20.16■□□□□ 0.82
HMGA1-202ENST00000347617 ZNF692Q9BU19 519 aaPredicted RBP20.16■□□□□ 0.82
HMGA1-202ENST00000347617 ANKRD26Q9UPS8 1709 aa20.14■□□□□ 0.82
HMGA1-202ENST00000347617 FYB1O15117 783 aa20.14■□□□□ 0.81
HMGA1-202ENST00000347617 IGHDP01880 384 aa20.13■□□□□ 0.81
HMGA1-202ENST00000347617 TBC1D32Q96NH3 1257 aa20.13■□□□□ 0.81
HMGA1-202ENST00000347617 XRN1Q8IZH2 1706 aaKnown RBP20.13■□□□□ 0.81
HMGA1-202ENST00000347617 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.13■□□□□ 0.81
HMGA1-202ENST00000347617 PPIP5K1Q6PFW1 1433 aa20.13■□□□□ 0.81
HMGA1-202ENST00000347617 GOLGA6L3A6NEY3 463 aa20.13■□□□□ 0.81
HMGA1-202ENST00000347617 EDC4Q6P2E9 1401 aaKnown RBP20.12■□□□□ 0.81
HMGA1-202ENST00000347617 FSD2A1L4K1 749 aa20.12■□□□□ 0.81
HMGA1-202ENST00000347617 CFAP53Q96M91 514 aa20.12■□□□□ 0.81
HMGA1-202ENST00000347617 CDC42BPGQ6DT37 1551 aa20.11■□□□□ 0.81
HMGA1-202ENST00000347617 PLEKHG3A1L390 1219 aa20.11■□□□□ 0.81
HMGA1-202ENST00000347617 BCAR3O75815 825 aa20.1■□□□□ 0.81
HMGA1-202ENST00000347617 CLCN1P35523 988 aa20.1■□□□□ 0.81
HMGA1-202ENST00000347617 APAF1O14727 1248 aa20.09■□□□□ 0.81
HMGA1-202ENST00000347617 CANXP27824 592 aaKnown RBP20.09■□□□□ 0.81
HMGA1-202ENST00000347617 NCBP3Q53F19 620 aaKnown RBP20.09■□□□□ 0.81
HMGA1-202ENST00000347617 RRAGDQ9NQL2 400 aaPredicted RBP20.09■□□□□ 0.81
HMGA1-202ENST00000347617 MTHFSP49914 203 aa20.08■□□□□ 0.81
HMGA1-202ENST00000347617 KIF20BQ96Q89 1820 aa20.07■□□□□ 0.8
HMGA1-202ENST00000347617 PRR36Q9H6K5 1346 aa20.07■□□□□ 0.8
HMGA1-202ENST00000347617 CHMP5Q9NZZ3 219 aa20.06■□□□□ 0.8
HMGA1-202ENST00000347617 AKAP12Q02952 1782 aa20.06■□□□□ 0.8
HMGA1-202ENST00000347617 MCM4P33991 863 aa20.06■□□□□ 0.8
HMGA1-202ENST00000347617 SLKQ9H2G2 1235 aaPredicted RBP20.06■□□□□ 0.8
HMGA1-202ENST00000347617 PNNQ9H307 717 aaKnown RBP20.06■□□□□ 0.8
HMGA1-202ENST00000347617 GGNBP2Q9H3C7 697 aa20.06■□□□□ 0.8
HMGA1-202ENST00000347617 RWDD1Q9H446 243 aaPredicted RBP20.06■□□□□ 0.8
HMGA1-202ENST00000347617 CHD2O14647 1828 aaKnown RBP20.05■□□□□ 0.8
HMGA1-202ENST00000347617 MON2Q7Z3U7 1717 aa20.05■□□□□ 0.8
HMGA1-202ENST00000347617 TOPAZ1Q8N9V7 1692 aa20.05■□□□□ 0.8
HMGA1-202ENST00000347617 MRE11P49959 708 aa20.05■□□□□ 0.8
HMGA1-202ENST00000347617 TBC1D2Q9BYX2 928 aa20.05■□□□□ 0.8
HMGA1-202ENST00000347617 SEC24BO95487 1268 aa20.04■□□□□ 0.8
HMGA1-202ENST00000347617 SPINK5Q9NQ38 1064 aaPredicted RBP20.04■□□□□ 0.8
HMGA1-202ENST00000347617 CCDC146Q8IYE0 955 aa20.03■□□□□ 0.8
HMGA1-202ENST00000347617 ANKARQ7Z5J8 1434 aa20.03■□□□□ 0.8
HMGA1-202ENST00000347617 PNPLA6Q8IY17 1366 aa20.03■□□□□ 0.8
HMGA1-202ENST00000347617 SHPRHQ149N8 1683 aa20.03■□□□□ 0.8
HMGA1-202ENST00000347617 NPHP4O75161 1426 aaPredicted RBP20.03■□□□□ 0.8
HMGA1-202ENST00000347617 PTMSP20962 102 aa20.03■□□□□ 0.8
HMGA1-202ENST00000347617 DDX11L8A8MPP1 907 aa20.02■□□□□ 0.8
HMGA1-202ENST00000347617 RRP9O43818 475 aaKnown RBP20.02■□□□□ 0.8
HMGA1-202ENST00000347617 XRCC6P12956 609 aaKnown RBP eCLIP20.02■□□□□ 0.8
HMGA1-202ENST00000347617 KCNA6P17658 529 aa20.02■□□□□ 0.8
HMGA1-202ENST00000347617 TNNT2P45379 298 aaPredicted RBP20.02■□□□□ 0.8
HMGA1-202ENST00000347617 ITSN1Q15811 1721 aa20.02■□□□□ 0.79
HMGA1-202ENST00000347617 WDR63Q8IWG1 891 aa20.01■□□□□ 0.79
HMGA1-202ENST00000347617 COG6Q9Y2V7 657 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms