RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 SSH1Q8WYL5 1049 aa22.25■■□□□ 1.15
COL9A1-201ENST00000320755 MYO5BQ9ULV0 1848 aa22.25■■□□□ 1.15
COL9A1-201ENST00000320755 ARHGAP31Q2M1Z3 1444 aa22.25■■□□□ 1.15
COL9A1-201ENST00000320755 MVPQ14764 893 aaKnown RBP22.25■■□□□ 1.15
COL9A1-201ENST00000320755 ATAD2Q6PL18 1390 aa22.25■■□□□ 1.15
COL9A1-201ENST00000320755 ITPRIPQ8IWB1 547 aa22.25■■□□□ 1.15
COL9A1-201ENST00000320755 USP19O94966 1318 aa22.22■■□□□ 1.15
COL9A1-201ENST00000320755 USP32Q8NFA0 1604 aa22.22■■□□□ 1.15
COL9A1-201ENST00000320755 TRIM27P14373 513 aa22.22■■□□□ 1.15
COL9A1-201ENST00000320755 NOB1Q9ULX3 412 aaKnown RBP22.21■■□□□ 1.15
COL9A1-201ENST00000320755 HMOX1P09601 288 aa22.21■■□□□ 1.15
COL9A1-201ENST00000320755 PTPRMP28827 1452 aa22.21■■□□□ 1.15
COL9A1-201ENST00000320755 ZFYVE9O95405 1425 aa22.2■■□□□ 1.14
COL9A1-201ENST00000320755 FRAT2O75474 233 aaPredicted RBP22.2■■□□□ 1.14
COL9A1-201ENST00000320755 PRKAR2BP31323 418 aa22.18■■□□□ 1.14
COL9A1-201ENST00000320755 RICTORQ6R327 1708 aa22.18■■□□□ 1.14
COL9A1-201ENST00000320755 THUMPD2Q9BTF0 503 aaKnown RBP22.18■■□□□ 1.14
COL9A1-201ENST00000320755 SLKQ9H2G2 1235 aaPredicted RBP22.17■■□□□ 1.14
COL9A1-201ENST00000320755 AAMPQ13685 434 aa22.16■■□□□ 1.14
COL9A1-201ENST00000320755 ATF7IPQ6VMQ6 1270 aa22.16■■□□□ 1.14
COL9A1-201ENST00000320755 TMEM131LA2VDJ0 1609 aa22.16■■□□□ 1.14
COL9A1-201ENST00000320755 CD163L1Q9NR16 1453 aa22.16■■□□□ 1.14
COL9A1-201ENST00000320755 UPF2Q9HAU5 1272 aaKnown RBP22.15■■□□□ 1.14
COL9A1-201ENST00000320755 ELL2O00472 640 aaPredicted RBP22.15■■□□□ 1.14
COL9A1-201ENST00000320755 TMEM57Q8N5G2 664 aa22.15■■□□□ 1.14
COL9A1-201ENST00000320755 ZRANB1Q9UGI0 708 aa22.15■■□□□ 1.14
COL9A1-201ENST00000320755 POLKQ9UBT6 870 aa22.15■■□□□ 1.14
COL9A1-201ENST00000320755 PREX1Q8TCU6 1659 aa22.14■■□□□ 1.14
COL9A1-201ENST00000320755 NCKAP5LQ9HCH0 1330 aa22.14■■□□□ 1.13
COL9A1-201ENST00000320755 EMILIN1Q9Y6C2 1016 aa22.14■■□□□ 1.13
COL9A1-201ENST00000320755 TXNDC2Q86VQ3 553 aa22.13■■□□□ 1.13
COL9A1-201ENST00000320755 PHACTR3Q96KR7 559 aa22.13■■□□□ 1.13
COL9A1-201ENST00000320755 CT47B1P0C2W7 299 aaPredicted RBP22.12■■□□□ 1.13
COL9A1-201ENST00000320755 GSE1Q14687 1217 aa22.12■■□□□ 1.13
COL9A1-201ENST00000320755 NME9Q86XW9 330 aa22.12■■□□□ 1.13
COL9A1-201ENST00000320755 SPRYD3Q8NCJ5 442 aa22.12■■□□□ 1.13
COL9A1-201ENST00000320755 DDX19BQ9UMR2 479 aa22.12■■□□□ 1.13
COL9A1-201ENST00000320755 ALKQ9UM73 1620 aa22.12■■□□□ 1.13
COL9A1-201ENST00000320755 NCBP3Q53F19 620 aaKnown RBP22.11■■□□□ 1.13
COL9A1-201ENST00000320755 IL27Q8NEV9 243 aa22.11■■□□□ 1.13
COL9A1-201ENST00000320755 PNNQ9H307 717 aaKnown RBP22.11■■□□□ 1.13
COL9A1-201ENST00000320755 COL3A1P02461 1466 aaPredicted RBP22.11■■□□□ 1.13
COL9A1-201ENST00000320755 BECN1Q14457 450 aa22.11■■□□□ 1.13
COL9A1-201ENST00000320755 FCHSD2O94868 740 aa22.1■■□□□ 1.13
COL9A1-201ENST00000320755 RTN4Q9NQC3 1192 aaKnown RBP22.1■■□□□ 1.13
COL9A1-201ENST00000320755 ADGRB2O60241 1585 aa22.09■■□□□ 1.13
COL9A1-201ENST00000320755 NLRP1Q9C000 1473 aa22.09■■□□□ 1.13
COL9A1-201ENST00000320755 RSPH6AQ9H0K4 717 aa22.08■■□□□ 1.13
COL9A1-201ENST00000320755 TSPOAP1O95153 1857 aa22.08■■□□□ 1.13
COL9A1-201ENST00000320755 MFAP1P55081 439 aaKnown RBP22.08■■□□□ 1.13
COL9A1-201ENST00000320755 ARHGEF40Q8TER5 1519 aa22.08■■□□□ 1.12
COL9A1-201ENST00000320755 RRS1Q15050 365 aaKnown RBP22.08■■□□□ 1.12
COL9A1-201ENST00000320755 ESF1Q9H501 851 aaKnown RBP22.08■■□□□ 1.12
COL9A1-201ENST00000320755 IPO8O15397 1037 aaKnown RBP22.07■■□□□ 1.12
COL9A1-201ENST00000320755 IL16Q14005 1332 aa22.07■■□□□ 1.12
COL9A1-201ENST00000320755 NUTM2FA1L443 756 aa22.06■■□□□ 1.12
COL9A1-201ENST00000320755 RIMS2Q9UQ26 1411 aa22.05■■□□□ 1.12
COL9A1-201ENST00000320755 TSPYL6Q8N831 410 aa22.05■■□□□ 1.12
COL9A1-201ENST00000320755 TBC1D32Q96NH3 1257 aa22.05■■□□□ 1.12
COL9A1-201ENST00000320755 PNPLA6Q8IY17 1366 aa22.05■■□□□ 1.12
COL9A1-201ENST00000320755 WASLO00401 505 aaPredicted RBP22.04■■□□□ 1.12
COL9A1-201ENST00000320755 LNPKQ9C0E8 428 aa22.04■■□□□ 1.12
COL9A1-201ENST00000320755 C1orf115Q9H7X2 142 aa22.04■■□□□ 1.12
COL9A1-201ENST00000320755 KIF16BQ96L93 1317 aa22.04■■□□□ 1.12
COL9A1-201ENST00000320755 ZBTB40Q9NUA8 1239 aa22.03■■□□□ 1.12
COL9A1-201ENST00000320755 NFE2L2Q16236 605 aa22.03■■□□□ 1.12
COL9A1-201ENST00000320755 HDAC1Q13547 482 aaPredicted RBP22.02■■□□□ 1.12
COL9A1-201ENST00000320755 NUDT16Q96DE0 195 aaKnown RBP22.02■■□□□ 1.12
COL9A1-201ENST00000320755 TBC1D2Q9BYX2 928 aa22.01■■□□□ 1.11
COL9A1-201ENST00000320755 DCTN1Q14203 1278 aa22.01■■□□□ 1.11
COL9A1-201ENST00000320755 A2ML1A8K2U0 1454 aa22.01■■□□□ 1.11
COL9A1-201ENST00000320755 MED14O60244 1454 aa22.01■■□□□ 1.11
COL9A1-201ENST00000320755 FAM83GA6ND36 823 aa22■■□□□ 1.11
COL9A1-201ENST00000320755 METP08581 1390 aa22■■□□□ 1.11
COL9A1-201ENST00000320755 COG3Q96JB2 828 aa22■■□□□ 1.11
COL9A1-201ENST00000320755 SOX12O15370 315 aa22■■□□□ 1.11
COL9A1-201ENST00000320755 BRPF3Q9ULD4 1205 aa22■■□□□ 1.11
COL9A1-201ENST00000320755 PPIP5K1Q6PFW1 1433 aa22■■□□□ 1.11
COL9A1-201ENST00000320755 LRRC7Q96NW7 1537 aa21.99■■□□□ 1.11
COL9A1-201ENST00000320755 C22orf23Q9BZE7 217 aa21.98■■□□□ 1.11
COL9A1-201ENST00000320755 IL13P35225 146 aa21.98■■□□□ 1.11
COL9A1-201ENST00000320755 PLPPR3Q6T4P5 718 aa21.98■■□□□ 1.11
COL9A1-201ENST00000320755 VIRMAQ69YN4 1812 aaKnown RBP21.98■■□□□ 1.11
COL9A1-201ENST00000320755 VAMP4O75379 141 aa21.98■■□□□ 1.11
COL9A1-201ENST00000320755 SMC5Q8IY18 1101 aa21.98■■□□□ 1.11
COL9A1-201ENST00000320755 ALDH1L2Q3SY69 923 aa21.97■■□□□ 1.11
COL9A1-201ENST00000320755 MBIPQ9NS73 344 aa21.97■■□□□ 1.11
COL9A1-201ENST00000320755 CLTCQ00610 1675 aaKnown RBP21.96■■□□□ 1.11
COL9A1-201ENST00000320755 CCDC61Q9Y6R9 512 aa21.96■■□□□ 1.11
COL9A1-201ENST00000320755 FAM135BQ49AJ0 1406 aa21.95■■□□□ 1.1
COL9A1-201ENST00000320755 ANKRD45Q5TZF3 282 aa21.95■■□□□ 1.1
COL9A1-201ENST00000320755 GNAI1P63096 354 aa21.95■■□□□ 1.1
COL9A1-201ENST00000320755 MAP2P11137 1827 aaKnown RBP21.94■■□□□ 1.1
COL9A1-201ENST00000320755 ANKRD26Q9UPS8 1709 aa21.94■■□□□ 1.1
COL9A1-201ENST00000320755 C8orf58Q8NAV2 365 aa21.94■■□□□ 1.1
COL9A1-201ENST00000320755 TWISTNBQ3B726 338 aaPredicted RBP21.93■■□□□ 1.1
COL9A1-201ENST00000320755 PPP6R1Q9UPN7 881 aa21.93■■□□□ 1.1
COL9A1-201ENST00000320755 MRPL50Q8N5N7 158 aaKnown RBP21.93■■□□□ 1.1
COL9A1-201ENST00000320755 KIF20BQ96Q89 1820 aa21.92■■□□□ 1.1
COL9A1-201ENST00000320755 CALD1Q05682 793 aaKnown RBP21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms