RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 CCDC9Q9Y3X0 531 aaKnown RBP10.42□□□□□ -0.74
PTPN3-201ENST00000262539 E9PCH4 1651 aa10.42□□□□□ -0.74
PTPN3-201ENST00000262539 ZRSR1Q15695 479 aaKnown RBP10.42□□□□□ -0.74
PTPN3-201ENST00000262539 NCLP19338 710 aaKnown RBP10.42□□□□□ -0.74
PTPN3-201ENST00000262539 AMPHP49418 695 aa10.42□□□□□ -0.74
PTPN3-201ENST00000262539 AMOTL2Q9Y2J4 779 aa10.42□□□□□ -0.74
PTPN3-201ENST00000262539 GGNBP2Q9H3C7 697 aa10.41□□□□□ -0.74
PTPN3-201ENST00000262539 ABCA6Q8N139 1617 aa10.41□□□□□ -0.74
PTPN3-201ENST00000262539 ALDH1L2Q3SY69 923 aa10.41□□□□□ -0.74
PTPN3-201ENST00000262539 DMRT2Q9Y5R5 561 aa10.41□□□□□ -0.74
PTPN3-201ENST00000262539 FYB1O15117 783 aa10.4□□□□□ -0.74
PTPN3-201ENST00000262539 HTATSF1O43719 755 aaKnown RBP10.4□□□□□ -0.74
PTPN3-201ENST00000262539 NUTM2DQ5VT03 806 aaPredicted RBP10.4□□□□□ -0.74
PTPN3-201ENST00000262539 ADGRB1O14514 1584 aa10.4□□□□□ -0.74
PTPN3-201ENST00000262539 PPRC1Q5VV67 1664 aaKnown RBP10.4□□□□□ -0.74
PTPN3-201ENST00000262539 ARHGAP45Q92619 1136 aa10.4□□□□□ -0.75
PTPN3-201ENST00000262539 STK31Q9BXU1 1019 aa10.39□□□□□ -0.75
PTPN3-201ENST00000262539 PTCH1Q13635 1447 aa10.39□□□□□ -0.75
PTPN3-201ENST00000262539 HMMRO75330 724 aa10.39□□□□□ -0.75
PTPN3-201ENST00000262539 NFE2L2Q16236 605 aa10.39□□□□□ -0.75
PTPN3-201ENST00000262539 KCNA6P17658 529 aa10.39□□□□□ -0.75
PTPN3-201ENST00000262539 TNNT2P45379 298 aaPredicted RBP10.39□□□□□ -0.75
PTPN3-201ENST00000262539 A0A1W2PP64 1363 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 OS9Q13438 667 aaPredicted RBP10.38□□□□□ -0.75
PTPN3-201ENST00000262539 PHF8Q9UPP1 1060 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 CADPS2Q86UW7 1296 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 TMX4Q9H1E5 349 aaPredicted RBP10.38□□□□□ -0.75
PTPN3-201ENST00000262539 WWC1Q8IX03 1113 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 CARD14Q9BXL6 1004 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 CCDC184Q52MB2 194 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 NEXMIFQ5QGS0 1516 aa10.38□□□□□ -0.75
PTPN3-201ENST00000262539 RIPK4P57078 832 aa10.37□□□□□ -0.75
PTPN3-201ENST00000262539 NEUROD2Q15784 382 aa10.37□□□□□ -0.75
PTPN3-201ENST00000262539 CASC1Q6TDU7 716 aa10.37□□□□□ -0.75
PTPN3-201ENST00000262539 NAP1L2Q9ULW6 460 aaPredicted RBP10.37□□□□□ -0.75
PTPN3-201ENST00000262539 CAMSAP1Q5T5Y3 1602 aa10.37□□□□□ -0.75
PTPN3-201ENST00000262539 SOX12O15370 315 aa10.37□□□□□ -0.75
PTPN3-201ENST00000262539 FLT4P35916 1363 aa10.37□□□□□ -0.75
PTPN3-201ENST00000262539 NLRP6P59044 892 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 SMC4Q9NTJ3 1288 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 IFT57Q9NWB7 429 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 KIF1BO60333 1816 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 KDM5AP29375 1690 aaKnown RBP10.36□□□□□ -0.75
PTPN3-201ENST00000262539 HMGB2P26583 209 aaKnown RBP10.36□□□□□ -0.75
PTPN3-201ENST00000262539 DZIP1LQ8IYY4 767 aaKnown RBP10.36□□□□□ -0.75
PTPN3-201ENST00000262539 BECN1Q14457 450 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 PROSER2Q86WR7 435 aaPredicted RBP10.36□□□□□ -0.75
PTPN3-201ENST00000262539 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.36□□□□□ -0.758e-7■■■□□ 18.1
PTPN3-201ENST00000262539 NCOA3Q9Y6Q9 1424 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 FANCIQ9NVI1 1328 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 ANP32EQ9BTT0 268 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 DNAJC5Q9H3Z4 198 aa10.36□□□□□ -0.75
PTPN3-201ENST00000262539 RTL1A6NKG5 1358 aa10.35□□□□□ -0.75
PTPN3-201ENST00000262539 ATF3P18847 181 aa10.35□□□□□ -0.75
PTPN3-201ENST00000262539 TMPOP42166 694 aaKnown RBP10.35□□□□□ -0.75
PTPN3-201ENST00000262539 DUSP27Q5VZP5 1158 aa10.35□□□□□ -0.75
PTPN3-201ENST00000262539 ZNF521Q96K83 1311 aa10.35□□□□□ -0.75
PTPN3-201ENST00000262539 SLC26A8Q96RN1 970 aa10.35□□□□□ -0.75
PTPN3-201ENST00000262539 USP31Q70CQ4 1352 aa10.35□□□□□ -0.75
PTPN3-201ENST00000262539 PRKAR2BP31323 418 aa10.34□□□□□ -0.75
PTPN3-201ENST00000262539 CLUAP1Q96AJ1 413 aa10.34□□□□□ -0.75
PTPN3-201ENST00000262539 PHF23Q9BUL5 403 aaPredicted RBP10.34□□□□□ -0.75
PTPN3-201ENST00000262539 CEP152O94986 1710 aa10.34□□□□□ -0.75
PTPN3-201ENST00000262539 PLEKHG2Q9H7P9 1386 aa10.34□□□□□ -0.75
PTPN3-201ENST00000262539 AMOTQ4VCS5 1084 aa10.34□□□□□ -0.75
PTPN3-201ENST00000262539 C19orf44Q9H6X5 657 aa10.34□□□□□ -0.75
PTPN3-201ENST00000262539 ARHGAP23Q9P227 1491 aa10.33□□□□□ -0.76
PTPN3-201ENST00000262539 PRM3Q9NNZ6 103 aa10.33□□□□□ -0.76
PTPN3-201ENST00000262539 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.33□□□□□ -0.76
PTPN3-201ENST00000262539 FRAT1Q92837 279 aaPredicted RBP10.33□□□□□ -0.76
PTPN3-201ENST00000262539 PNPLA6Q8IY17 1366 aa10.32□□□□□ -0.76
PTPN3-201ENST00000262539 HSP90AB1P08238 724 aaKnown RBP10.32□□□□□ -0.76
PTPN3-201ENST00000262539 DIP2AQ14689 1571 aa10.32□□□□□ -0.76
PTPN3-201ENST00000262539 SBNO1A3KN83 1393 aa10.32□□□□□ -0.76
PTPN3-201ENST00000262539 ACEP12821 1306 aa10.32□□□□□ -0.76
PTPN3-201ENST00000262539 PLEKHO1Q53GL0 409 aaPredicted RBP10.32□□□□□ -0.76
PTPN3-201ENST00000262539 FGD1P98174 961 aa10.32□□□□□ -0.76
PTPN3-201ENST00000262539 WAPLQ7Z5K2 1190 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 HOXB7P09629 217 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 B4GALNT3Q6L9W6 998 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 PLEKHH1Q9ULM0 1364 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 POLKQ9UBT6 870 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 CSB-PGBD3P0DP91 1061 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 CCDC146Q8IYE0 955 aa10.31□□□□□ -0.76
PTPN3-201ENST00000262539 ZNF330Q9Y3S2 320 aaPredicted RBP10.31□□□□□ -0.76
PTPN3-201ENST00000262539 TRMT2AQ8IZ69 625 aaKnown RBP10.3□□□□□ -0.76
PTPN3-201ENST00000262539 ALKQ9UM73 1620 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 IQGAP1P46940 1657 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 BRPF1P55201 1214 aaPredicted RBP10.3□□□□□ -0.76
PTPN3-201ENST00000262539 PIK3C2BO00750 1634 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 CDK12Q9NYV4 1490 aaPredicted RBP10.3□□□□□ -0.76
PTPN3-201ENST00000262539 NPHP3Q7Z494 1330 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 G3V3G9 751 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 DCAF8Q5TAQ9 597 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 RICTORQ6R327 1708 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 SLIT1O75093 1534 aa10.3□□□□□ -0.76
PTPN3-201ENST00000262539 PTPRUQ92729 1446 aa10.29□□□□□ -0.76
PTPN3-201ENST00000262539 PTPRMP28827 1452 aa10.29□□□□□ -0.76
PTPN3-201ENST00000262539 MYO3AQ8NEV4 1616 aa10.29□□□□□ -0.76
PTPN3-201ENST00000262539 HSP90AB4PQ58FF6 505 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms