RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 COG6Q9Y2V7 657 aa28.29■■■□□ 2.12
SMARCD2-201ENST00000225742 CDC42BPGQ6DT37 1551 aa28.27■■■□□ 2.12
SMARCD2-201ENST00000225742 VIRMAQ69YN4 1812 aaKnown RBP28.27■■■□□ 2.12
SMARCD2-201ENST00000225742 IGHDP01880 384 aa28.27■■■□□ 2.12
SMARCD2-201ENST00000225742 RTL5Q5HYW3 569 aaPredicted RBP28.26■■■□□ 2.11
SMARCD2-201ENST00000225742 FRAT1Q92837 279 aaPredicted RBP28.26■■■□□ 2.11
SMARCD2-201ENST00000225742 TMPOP42166 694 aaKnown RBP28.25■■■□□ 2.11
SMARCD2-201ENST00000225742 NBR1Q14596 966 aa28.25■■■□□ 2.11
SMARCD2-201ENST00000225742 ZMYM3Q14202 1370 aa28.25■■■□□ 2.11
SMARCD2-201ENST00000225742 PPM1GO15355 546 aaPredicted RBP28.24■■■□□ 2.11
SMARCD2-201ENST00000225742 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.24■■■□□ 2.11
SMARCD2-201ENST00000225742 U2SURPO15042 1029 aaKnown RBP28.23■■■□□ 2.11
SMARCD2-201ENST00000225742 RGS3P49796 1198 aa28.23■■■□□ 2.11
SMARCD2-201ENST00000225742 DIAPH1O60610 1272 aaKnown RBP28.22■■■□□ 2.11
SMARCD2-201ENST00000225742 CABP1Q9NZU7 370 aa28.22■■■□□ 2.11
SMARCD2-201ENST00000225742 USP35Q9P2H5 1018 aa28.21■■■□□ 2.11
SMARCD2-201ENST00000225742 TRIM35Q9UPQ4 493 aa28.2■■■□□ 2.1
SMARCD2-201ENST00000225742 ZKSCAN2Q63HK3 967 aa28.19■■■□□ 2.1
SMARCD2-201ENST00000225742 SIRT1Q96EB6 747 aa28.18■■■□□ 2.1
SMARCD2-201ENST00000225742 KNDC1Q76NI1 1749 aa28.18■■■□□ 2.1
SMARCD2-201ENST00000225742 NRXN3Q9Y4C0 1643 aa28.18■■■□□ 2.1
SMARCD2-201ENST00000225742 FCHSD2O94868 740 aa28.17■■■□□ 2.1
SMARCD2-201ENST00000225742 DEKP35659 375 aaKnown RBP28.17■■■□□ 2.1
SMARCD2-201ENST00000225742 RLBP1P12271 317 aa28.15■■■□□ 2.1
SMARCD2-201ENST00000225742 RWDD1Q9H446 243 aaPredicted RBP28.15■■■□□ 2.1
SMARCD2-201ENST00000225742 SENP3Q9H4L4 574 aaPredicted RBP28.15■■■□□ 2.1
SMARCD2-201ENST00000225742 HDGFP51858 240 aaKnown RBP28.15■■■□□ 2.1
SMARCD2-201ENST00000225742 MVPQ14764 893 aaKnown RBP28.15■■■□□ 2.1
SMARCD2-201ENST00000225742 FAM135BQ49AJ0 1406 aa28.14■■■□□ 2.09
SMARCD2-201ENST00000225742 EDC4Q6P2E9 1401 aaKnown RBP28.14■■■□□ 2.09
SMARCD2-201ENST00000225742 CPSF1Q10570 1443 aaKnown RBP28.13■■■□□ 2.09
SMARCD2-201ENST00000225742 DZIP1LQ8IYY4 767 aaKnown RBP28.13■■■□□ 2.09
SMARCD2-201ENST00000225742 DAXXQ9UER7 740 aaPredicted RBP28.12■■■□□ 2.09
SMARCD2-201ENST00000225742 TECPR2O15040 1411 aa28.12■■■□□ 2.09
SMARCD2-201ENST00000225742 RIPK4P57078 832 aa28.11■■■□□ 2.09
SMARCD2-201ENST00000225742 EXOSC9Q06265 439 aaKnown RBP28.11■■■□□ 2.09
SMARCD2-201ENST00000225742 PCDHB15Q9Y5E8 787 aa28.11■■■□□ 2.09
SMARCD2-201ENST00000225742 WAPLQ7Z5K2 1190 aa28.11■■■□□ 2.09
SMARCD2-201ENST00000225742 WASLO00401 505 aaPredicted RBP28.1■■■□□ 2.09
SMARCD2-201ENST00000225742 BCL2L13Q9BXK5 485 aa28.1■■■□□ 2.09
SMARCD2-201ENST00000225742 NEFMP07197 916 aa28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 FTSJ3Q8IY81 847 aaKnown RBP28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 TSR2Q969E8 191 aaKnown RBP28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 SMC4Q9NTJ3 1288 aa28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 LRRC7Q96NW7 1537 aa28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 ESF1Q9H501 851 aaKnown RBP28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 POLKQ9UBT6 870 aa28.08■■■□□ 2.09
SMARCD2-201ENST00000225742 TNNQ9UQP3 1299 aa28.07■■■□□ 2.08
SMARCD2-201ENST00000225742 AATKQ6ZMQ8 1374 aa28.07■■■□□ 2.08
SMARCD2-201ENST00000225742 CPS1P31327 1500 aa28.07■■■□□ 2.08
SMARCD2-201ENST00000225742 MAP2P11137 1827 aaKnown RBP28.06■■■□□ 2.08
SMARCD2-201ENST00000225742 ZNF428Q96B54 188 aa28.06■■■□□ 2.08
SMARCD2-201ENST00000225742 PPIP5K1Q6PFW1 1433 aa28.06■■■□□ 2.08
SMARCD2-201ENST00000225742 RSPH6AQ9H0K4 717 aa28.06■■■□□ 2.08
SMARCD2-201ENST00000225742 KIF13AQ9H1H9 1805 aa28.06■■■□□ 2.08
SMARCD2-201ENST00000225742 CDK12Q9NYV4 1490 aaPredicted RBP28.05■■■□□ 2.08
SMARCD2-201ENST00000225742 ALDH1L2Q3SY69 923 aa28.05■■■□□ 2.08
SMARCD2-201ENST00000225742 MON2Q7Z3U7 1717 aa28.05■■■□□ 2.08
SMARCD2-201ENST00000225742 MLECQ14165 292 aa28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 SSH1Q8WYL5 1049 aa28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 DDX19BQ9UMR2 479 aa28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 LAS1LQ9Y4W2 734 aaKnown RBP28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 METP08581 1390 aa28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 IPO8O15397 1037 aaKnown RBP28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 CALD1Q05682 793 aaKnown RBP28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.04■■■□□ 2.08
SMARCD2-201ENST00000225742 KIF16BQ96L93 1317 aa28.03■■■□□ 2.08
SMARCD2-201ENST00000225742 ATF7IPQ6VMQ6 1270 aa28.03■■■□□ 2.08
SMARCD2-201ENST00000225742 PDZRN3Q9UPQ7 1066 aa28.02■■■□□ 2.08
SMARCD2-201ENST00000225742 AKAP12Q02952 1782 aa28.02■■■□□ 2.08
SMARCD2-201ENST00000225742 TNRQ92752 1358 aa28.01■■■□□ 2.07
SMARCD2-201ENST00000225742 TRIM27P14373 513 aa28■■■□□ 2.07
SMARCD2-201ENST00000225742 BRPF1P55201 1214 aaPredicted RBP28■■■□□ 2.07
SMARCD2-201ENST00000225742 HDAC1Q13547 482 aaPredicted RBP28■■■□□ 2.07
SMARCD2-201ENST00000225742 PRKAR2BP31323 418 aa27.99■■■□□ 2.07
SMARCD2-201ENST00000225742 NFE2L2Q16236 605 aa27.99■■■□□ 2.07
SMARCD2-201ENST00000225742 ITSN1Q15811 1721 aa27.99■■■□□ 2.07
SMARCD2-201ENST00000225742 NUDT16Q96DE0 195 aaKnown RBP27.99■■■□□ 2.07
SMARCD2-201ENST00000225742 CCDC61Q9Y6R9 512 aa27.98■■■□□ 2.07
SMARCD2-201ENST00000225742 ZNF692Q9BU19 519 aaPredicted RBP27.97■■■□□ 2.07
SMARCD2-201ENST00000225742 UBR1Q8IWV7 1749 aa27.97■■■□□ 2.07
SMARCD2-201ENST00000225742 USP19O94966 1318 aa27.97■■■□□ 2.07
SMARCD2-201ENST00000225742 NOB1Q9ULX3 412 aaKnown RBP27.96■■■□□ 2.07
SMARCD2-201ENST00000225742 C3P01024 1663 aa27.96■■■□□ 2.07
SMARCD2-201ENST00000225742 IL13P35225 146 aa27.95■■■□□ 2.07
SMARCD2-201ENST00000225742 TMEM2Q9UHN6 1383 aa27.95■■■□□ 2.06
SMARCD2-201ENST00000225742 TXNDC2Q86VQ3 553 aa27.95■■■□□ 2.06
SMARCD2-201ENST00000225742 COG3Q96JB2 828 aa27.94■■■□□ 2.06
SMARCD2-201ENST00000225742 BCL11AQ9H165 835 aa27.94■■■□□ 2.06
SMARCD2-201ENST00000225742 LMOD3Q0VAK6 560 aa27.92■■■□□ 2.06
SMARCD2-201ENST00000225742 NME9Q86XW9 330 aa27.92■■■□□ 2.06
SMARCD2-201ENST00000225742 ITPRIPQ8IWB1 547 aa27.92■■■□□ 2.06
SMARCD2-201ENST00000225742 UPF2Q9HAU5 1272 aaKnown RBP27.92■■■□□ 2.06
SMARCD2-201ENST00000225742 CHMP4BQ9H444 224 aaKnown RBP27.91■■■□□ 2.06
SMARCD2-201ENST00000225742 IFT57Q9NWB7 429 aa27.91■■■□□ 2.06
SMARCD2-201ENST00000225742 GNAI1P63096 354 aa27.9■■■□□ 2.06
SMARCD2-201ENST00000225742 EMILIN1Q9Y6C2 1016 aa27.9■■■□□ 2.06
SMARCD2-201ENST00000225742 BECN1Q14457 450 aa27.89■■■□□ 2.06
SMARCD2-201ENST00000225742 ARHGAP45Q92619 1136 aa27.89■■■□□ 2.06
SMARCD2-201ENST00000225742 SLC4A3P48751 1232 aa27.88■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms