RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 PUS7Q96PZ0 661 aaKnown RBP17.23■□□□□ 0.35
GABPB1-201ENST00000220429 CLTCQ00610 1675 aaKnown RBP17.22■□□□□ 0.35
GABPB1-201ENST00000220429 PLIN1O60240 522 aa17.22■□□□□ 0.35
GABPB1-201ENST00000220429 OFD1O75665 1012 aa17.21■□□□□ 0.35
GABPB1-201ENST00000220429 SHPRHQ149N8 1683 aa17.21■□□□□ 0.35
GABPB1-201ENST00000220429 TNNT2P45379 298 aaPredicted RBP17.21■□□□□ 0.35
GABPB1-201ENST00000220429 GOLGA2Q08379 1002 aa17.21■□□□□ 0.35
GABPB1-201ENST00000220429 MORC1Q86VD1 984 aa17.21■□□□□ 0.35
GABPB1-201ENST00000220429 GRPEL1Q9HAV7 217 aa17.21■□□□□ 0.35
GABPB1-201ENST00000220429 APAF1O14727 1248 aa17.2■□□□□ 0.34
GABPB1-201ENST00000220429 SAFB2Q14151 953 aaKnown RBP eCLIP17.2■□□□□ 0.34
GABPB1-201ENST00000220429 ZNF830Q96NB3 372 aaPredicted RBP17.2■□□□□ 0.34
GABPB1-201ENST00000220429 SLKQ9H2G2 1235 aaPredicted RBP17.2■□□□□ 0.34
GABPB1-201ENST00000220429 STK26Q9P289 416 aa17.2■□□□□ 0.34
GABPB1-201ENST00000220429 CABP2Q9NPB3 220 aa17.2■□□□□ 0.34
GABPB1-201ENST00000220429 PTPRMP28827 1452 aa17.19■□□□□ 0.34
GABPB1-201ENST00000220429 PLCD3Q8N3E9 789 aa17.19■□□□□ 0.34
GABPB1-201ENST00000220429 ANKRD36BQ8N2N9 1353 aa17.19■□□□□ 0.34
GABPB1-201ENST00000220429 KIF13AQ9H1H9 1805 aa17.19■□□□□ 0.34
GABPB1-201ENST00000220429 ZSCAN20P17040 1043 aaPredicted RBP17.19■□□□□ 0.34
GABPB1-201ENST00000220429 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.19■□□□□ 0.34
GABPB1-201ENST00000220429 FTSJ3Q8IY81 847 aaKnown RBP17.19■□□□□ 0.34
GABPB1-201ENST00000220429 ANP32BQ92688 251 aaKnown RBP17.19■□□□□ 0.34
GABPB1-201ENST00000220429 CGNL1Q0VF96 1302 aa17.18■□□□□ 0.34
GABPB1-201ENST00000220429 SLFN5Q08AF3 891 aa17.18■□□□□ 0.34
GABPB1-201ENST00000220429 PPP6R1Q9UPN7 881 aa17.18■□□□□ 0.34
GABPB1-201ENST00000220429 BECN1Q14457 450 aa17.17■□□□□ 0.34
GABPB1-201ENST00000220429 ALKQ9UM73 1620 aa17.17■□□□□ 0.34
GABPB1-201ENST00000220429 YTHDC2Q9H6S0 1430 aaKnown RBP17.17■□□□□ 0.34
GABPB1-201ENST00000220429 VGLL3A8MV65 326 aa17.16■□□□□ 0.34
GABPB1-201ENST00000220429 TRMT2AQ8IZ69 625 aaKnown RBP17.16■□□□□ 0.34
GABPB1-201ENST00000220429 ARID3AQ99856 593 aa17.16■□□□□ 0.34
GABPB1-201ENST00000220429 SPATA31D1Q6ZQQ2 1576 aa17.16■□□□□ 0.34
GABPB1-201ENST00000220429 KIF20AO95235 890 aa17.16■□□□□ 0.34
GABPB1-201ENST00000220429 ANTXR1Q9H6X2 564 aa17.15■□□□□ 0.34
GABPB1-201ENST00000220429 SPINK5Q9NQ38 1064 aaPredicted RBP17.15■□□□□ 0.34
GABPB1-201ENST00000220429 ISY1Q9ULR0 285 aaKnown RBP17.15■□□□□ 0.34
GABPB1-201ENST00000220429 CRBNQ96SW2 442 aa17.14■□□□□ 0.33
GABPB1-201ENST00000220429 STAG3Q9UJ98 1225 aa17.14■□□□□ 0.33
GABPB1-201ENST00000220429 PRAM1Q96QH2 718 aa17.13■□□□□ 0.33
GABPB1-201ENST00000220429 ARHGEF40Q8TER5 1519 aa17.13■□□□□ 0.33
GABPB1-201ENST00000220429 A2ML1A8K2U0 1454 aa17.13■□□□□ 0.33
GABPB1-201ENST00000220429 C20orf194Q5TEA3 1177 aa17.13■□□□□ 0.33
GABPB1-201ENST00000220429 NSD2O96028 1365 aa17.13■□□□□ 0.33
GABPB1-201ENST00000220429 MCM4P33991 863 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 MLECQ14165 292 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 A0A1W2PP64 1363 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 MINK1Q8N4C8 1332 aaPredicted RBP17.12■□□□□ 0.33
GABPB1-201ENST00000220429 KDM2BQ8NHM5 1336 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 MTHFSP49914 203 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 SRPK2P78362 688 aaKnown RBP17.12■□□□□ 0.33
GABPB1-201ENST00000220429 DMRT2Q9Y5R5 561 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 NINLQ9Y2I6 1382 aa17.12■□□□□ 0.33
GABPB1-201ENST00000220429 TRAK2O60296 914 aa17.11■□□□□ 0.33
GABPB1-201ENST00000220429 NGEFQ8N5V2 710 aa17.11■□□□□ 0.33
GABPB1-201ENST00000220429 ZFP91Q96JP5 570 aaPredicted RBP17.11■□□□□ 0.33
GABPB1-201ENST00000220429 GTPBP4Q9BZE4 634 aaKnown RBP17.11■□□□□ 0.33
GABPB1-201ENST00000220429 SETD1AO15047 1707 aaKnown RBP17.1■□□□□ 0.33
GABPB1-201ENST00000220429 NKTRP30414 1462 aaKnown RBP17.1■□□□□ 0.33
GABPB1-201ENST00000220429 ZSCAN30Q86W11 494 aa17.1■□□□□ 0.33
GABPB1-201ENST00000220429 CCDC94Q9BW85 323 aaPredicted RBP17.1■□□□□ 0.33
GABPB1-201ENST00000220429 R3HCC1Q9Y3T6 440 aaKnown RBP17.1■□□□□ 0.33
GABPB1-201ENST00000220429 ABCC11Q96J66 1382 aa17.1■□□□□ 0.33
GABPB1-201ENST00000220429 CENPQQ7L2Z9 268 aaPredicted RBP17.1■□□□□ 0.33
GABPB1-201ENST00000220429 ATAD2Q6PL18 1390 aa17.09■□□□□ 0.33
GABPB1-201ENST00000220429 E9PSI1 815 aa17.09■□□□□ 0.33
GABPB1-201ENST00000220429 LETM1O95202 739 aaPredicted RBP17.09■□□□□ 0.33
GABPB1-201ENST00000220429 RIMS2Q9UQ26 1411 aa17.08■□□□□ 0.33
GABPB1-201ENST00000220429 CD163L1Q9NR16 1453 aa17.08■□□□□ 0.33
GABPB1-201ENST00000220429 UQCRHLA0A096LP55 91 aa17.08■□□□□ 0.33
GABPB1-201ENST00000220429 UQCRHP07919 91 aa17.08■□□□□ 0.33
GABPB1-201ENST00000220429 IQSEC2Q5JU85 1478 aa17.08■□□□□ 0.32
GABPB1-201ENST00000220429 DYNC1I1O14576 645 aa17.08■□□□□ 0.32
GABPB1-201ENST00000220429 WWC1Q8IX03 1113 aa17.08■□□□□ 0.32
GABPB1-201ENST00000220429 ANKRD26Q9UPS8 1709 aa17.07■□□□□ 0.32
GABPB1-201ENST00000220429 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
GABPB1-201ENST00000220429 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
GABPB1-201ENST00000220429 USP19O94966 1318 aa17.07■□□□□ 0.32
GABPB1-201ENST00000220429 CFAP53Q96M91 514 aa17.06■□□□□ 0.32
GABPB1-201ENST00000220429 BRD2P25440 801 aaKnown RBP17.06■□□□□ 0.32
GABPB1-201ENST00000220429 MSNP26038 577 aaKnown RBP17.06■□□□□ 0.32
GABPB1-201ENST00000220429 TEX2Q8IWB9 1127 aa17.05■□□□□ 0.32
GABPB1-201ENST00000220429 DLC1Q96QB1 1528 aa17.05■□□□□ 0.32
GABPB1-201ENST00000220429 TCP11L2Q8N4U5 519 aa17.05■□□□□ 0.32
GABPB1-201ENST00000220429 CDK19Q9BWU1 502 aa17.05■□□□□ 0.32
GABPB1-201ENST00000220429 NRXN3Q9Y4C0 1643 aa17.05■□□□□ 0.32
GABPB1-201ENST00000220429 NLRP1Q9C000 1473 aa17.04■□□□□ 0.32
GABPB1-201ENST00000220429 TAF3Q5VWG9 929 aa17.04■□□□□ 0.32
GABPB1-201ENST00000220429 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.04■□□□□ 0.32
GABPB1-201ENST00000220429 GGNBP2Q9H3C7 697 aa17.04■□□□□ 0.32
GABPB1-201ENST00000220429 TERF2IPQ9NYB0 399 aa17.04■□□□□ 0.32
GABPB1-201ENST00000220429 RRP7AQ9Y3A4 280 aaKnown RBP17.04■□□□□ 0.32
GABPB1-201ENST00000220429 NEUROD2Q15784 382 aa17.04■□□□□ 0.32
GABPB1-201ENST00000220429 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
GABPB1-201ENST00000220429 ZMYM3Q14202 1370 aa17.03■□□□□ 0.32
GABPB1-201ENST00000220429 FYB1O15117 783 aa17.02■□□□□ 0.32
GABPB1-201ENST00000220429 BCAR3O75815 825 aa17.02■□□□□ 0.32
GABPB1-201ENST00000220429 MED14O60244 1454 aa17.02■□□□□ 0.32
GABPB1-201ENST00000220429 CDK11BP21127 795 aaKnown RBP17.02■□□□□ 0.31
GABPB1-201ENST00000220429 CCDC173Q0VFZ6 552 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms