RNA–Protein interactions for RNA: YGL248W

PDE1, Transcript of Low-affinity cyclic AMP phosphodiesterase, yeastyeast

Gene PDE1, Length 1,110 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PDE1YGL248W SIP18P50263 79 aa2.64□□□□□ -1.99
PDE1YGL248W NCE101Q02820 53 aa2.64□□□□□ -1.99
PDE1YGL248W RPL43AP0CX25 92 aaKnown RBP2.61□□□□□ -1.99
PDE1YGL248W RPL43BP0CX26 92 aa2.61□□□□□ -1.99
PDE1YGL248W RPS27BP38711 82 aa2.6□□□□□ -1.99
PDE1YGL248W YOR008C-AQ3E7B9 74 aa2.6□□□□□ -1.99
PDE1YGL248W YLR342W-AQ3E810 57 aa2.58□□□□□ -2
PDE1YGL248W YCR108CQ3E819 63 aa2.56□□□□□ -2
PDE1YGL248W SEN1Q00416 2231 aaKnown RBP2.56□□□□□ -2
PDE1YGL248W YOL164W-AQ3E7A5 60 aa2.55□□□□□ -2
PDE1YGL248W YLR307C-AQ3E825 87 aa2.55□□□□□ -2
PDE1YGL248W YBL044WP38194 122 aa2.54□□□□□ -2
PDE1YGL248W YGL258W-AQ3E740 77 aa2.54□□□□□ -2
PDE1YGL248W YGR146C-AQ8TGT9 53 aa2.54□□□□□ -2
PDE1YGL248W YBR016WP38216 128 aa2.52□□□□□ -2.01
PDE1YGL248W YLR157W-EP0CF00 54 aa2.51□□□□□ -2.01
PDE1YGL248W YJL133C-AQ3E7A3 74 aa2.49□□□□□ -2.01
PDE1YGL248W TOM7P53507 60 aa2.48□□□□□ -2.01
PDE1YGL248W NUM1Q00402 2748 aa2.48□□□□□ -2.01
PDE1YGL248W YPR117WQ06116 2489 aa2.45□□□□□ -2.02
PDE1YGL248W RPL37BP51402 88 aaKnown RBP2.45□□□□□ -2.02
PDE1YGL248W YIL046W-AQ3E7Z4 54 aa2.45□□□□□ -2.02
PDE1YGL248W RPL37AP49166 88 aaKnown RBP2.43□□□□□ -2.02
PDE1YGL248W DDR2P89113 61 aa2.42□□□□□ -2.02
PDE1YGL248W YLL006W-AQ3E814 58 aa2.41□□□□□ -2.02
PDE1YGL248W TOR1P35169 2470 aa2.39□□□□□ -2.03
PDE1YGL248W YMR105W-AQ8TGS8 64 aa2.39□□□□□ -2.03
PDE1YGL248W TOM1Q03280 3268 aa2.37□□□□□ -2.03
PDE1YGL248W RPL39P04650 51 aa2.36□□□□□ -2.03
PDE1YGL248W RPL29P05747 59 aaPredicted RBP2.34□□□□□ -2.03
PDE1YGL248W YOR316C-AQ3E806 69 aa2.31□□□□□ -2.04
PDE1YGL248W YDR034W-BQ6Q5X2 51 aa2.3□□□□□ -2.04
PDE1YGL248W TAO3P40468 2376 aa2.29□□□□□ -2.04
PDE1YGL248W PMP3P87284 55 aa2.27□□□□□ -2.05
PDE1YGL248W YJL127C-BQ3E828 52 aa2.27□□□□□ -2.05
PDE1YGL248W VPS13Q07878 3144 aa2.27□□□□□ -2.05
PDE1YGL248W YOR072W-BQ3E832 53 aa2.25□□□□□ -2.05
PDE1YGL248W CUP1-1P0CX80 61 aa2.24□□□□□ -2.05
PDE1YGL248W CUP1-2P0CX81 61 aa2.24□□□□□ -2.05
PDE1YGL248W HOR7Q05827 59 aa2.24□□□□□ -2.05
PDE1YGL248W TOR2P32600 2474 aaKnown RBP2.18□□□□□ -2.06
PDE1YGL248W TEL1P38110 2787 aa2.15□□□□□ -2.06
PDE1YGL248W RPS29BP41058 56 aaKnown RBP2.15□□□□□ -2.07
PDE1YGL248W Q0297Q9ZZV8 51 aa2.14□□□□□ -2.07
PDE1YGL248W CSF1Q12150 2958 aa2.11□□□□□ -2.07
PDE1YGL248W IRA2P19158 3079 aa2.1□□□□□ -2.07
PDE1YGL248W GCN1P33892 2672 aaKnown RBP2.09□□□□□ -2.07
PDE1YGL248W YHR073W-AP0C5N7 58 aa2.09□□□□□ -2.07
PDE1YGL248W FMP27Q06179 2628 aa2.08□□□□□ -2.08
PDE1YGL248W YDR034C-AP0C289 58 aa2.05□□□□□ -2.08
PDE1YGL248W YLL066W-BQ8TGJ7 56 aa2.05□□□□□ -2.08
PDE1YGL248W IRA1P18963 3092 aa2.04□□□□□ -2.08
PDE1YGL248W PRP8P33334 2413 aaKnown RBP2.03□□□□□ -2.08
PDE1YGL248W YBR056W-AI2HB52 66 aa2.01□□□□□ -2.09
PDE1YGL248W TRA1P38811 3744 aa1.99□□□□□ -2.09
PDE1YGL248W UTP20P35194 2493 aaKnown RBP1.99□□□□□ -2.09
PDE1YGL248W RPS29AP41057 56 aaKnown RBP1.89□□□□□ -2.11
PDE1YGL248W MEC1P38111 2368 aa1.87□□□□□ -2.11
PDE1YGL248W MDN1Q12019 4910 aaKnown RBP1.79□□□□□ -2.12
PDE1YGL248W DYN1P36022 4092 aa1.72□□□□□ -2.13
PDE1YGL248W YML054C-AQ3E809 52 aa1.72□□□□□ -2.13
PDE1YGL248W YHR050W-AQ05451 56 aa1.67□□□□□ -2.14
PDE1YGL248W Q0017Q9ZZX8 53 aa1.67□□□□□ -2.14
Retrieved 63 of 5,963 RNA–protein pairs in 21 ms