RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W YHR073W-AP0C5N7 58 aa2.1□□□□□ -2.07
USE1YGL098W YMR230W-AQ3E7B5 62 aa2.1□□□□□ -2.07
USE1YGL098W YOR394C-AQ8TGJ0 55 aa2.1□□□□□ -2.07
USE1YGL098W YER078W-AQ3E7A2 54 aa2.09□□□□□ -2.07
USE1YGL098W RPL37BP51402 88 aaKnown RBP2.08□□□□□ -2.08
USE1YGL098W YGL260WP53056 76 aa2.08□□□□□ -2.08
USE1YGL098W YLL066W-BQ8TGJ7 56 aa2.08□□□□□ -2.08
USE1YGL098W YCL042WP25572 119 aa2.07□□□□□ -2.08
USE1YGL098W CMC4Q3E7A9 73 aa2.07□□□□□ -2.08
USE1YGL098W YOR316C-AQ3E806 69 aa2.07□□□□□ -2.08
USE1YGL098W COX7P10174 60 aa2.05□□□□□ -2.08
USE1YGL098W YBL044WP38194 122 aa2.05□□□□□ -2.08
USE1YGL098W YJR085CP47131 105 aaKnown RBP2.05□□□□□ -2.08
USE1YGL098W URA2P07259 2214 aaKnown RBP2.04□□□□□ -2.08
USE1YGL098W YCR108CQ3E819 63 aa2.03□□□□□ -2.08
USE1YGL098W Q0297Q9ZZV8 51 aa2.03□□□□□ -2.08
USE1YGL098W HFA1P32874 2273 aa2.02□□□□□ -2.09
USE1YGL098W YBR016WP38216 128 aa2.02□□□□□ -2.09
USE1YGL098W RPL43AP0CX25 92 aaKnown RBP2.01□□□□□ -2.09
USE1YGL098W RPL43BP0CX26 92 aa2.01□□□□□ -2.09
USE1YGL098W YDR034C-AP0C289 58 aa1.99□□□□□ -2.09
USE1YGL098W LCL1Q02786 101 aa1.99□□□□□ -2.09
USE1YGL098W YPR195CQ06594 109 aa1.99□□□□□ -2.09
USE1YGL098W YDR034W-BQ6Q5X2 51 aa1.99□□□□□ -2.09
USE1YGL098W YHR032W-AP0C5N6 59 aa1.98□□□□□ -2.09
USE1YGL098W IRA2P19158 3079 aa1.98□□□□□ -2.09
USE1YGL098W TAO3P40468 2376 aa1.98□□□□□ -2.09
USE1YGL098W YJL144WP47009 104 aa1.96□□□□□ -2.1
USE1YGL098W YBR072C-AQ3E794 53 aa1.95□□□□□ -2.1
USE1YGL098W TOM1Q03280 3268 aa1.93□□□□□ -2.1
USE1YGL098W YOR072W-BQ3E832 53 aa1.91□□□□□ -2.1
USE1YGL098W YJL009WP47078 108 aa1.9□□□□□ -2.11
USE1YGL098W CSF1Q12150 2958 aa1.9□□□□□ -2.11
USE1YGL098W VPS13Q07878 3144 aa1.89□□□□□ -2.11
USE1YGL098W HHY1P39982 102 aa1.89□□□□□ -2.11
USE1YGL098W RPL37AP49166 88 aaKnown RBP1.89□□□□□ -2.11
USE1YGL098W GCN1P33892 2672 aaKnown RBP1.88□□□□□ -2.11
USE1YGL098W YAL067W-AQ8TGK6 75 aa1.87□□□□□ -2.11
USE1YGL098W YFL067WP43537 175 aa1.86□□□□□ -2.11
USE1YGL098W TRA1P38811 3744 aa1.84□□□□□ -2.12
USE1YGL098W FMP27Q06179 2628 aa1.84□□□□□ -2.12
USE1YGL098W YBR056W-AI2HB52 66 aa1.81□□□□□ -2.12
USE1YGL098W PRP8P33334 2413 aaKnown RBP1.79□□□□□ -2.12
USE1YGL098W IRA1P18963 3092 aa1.79□□□□□ -2.12
USE1YGL098W YML054C-AQ3E809 52 aa1.79□□□□□ -2.12
USE1YGL098W UTP20P35194 2493 aaKnown RBP1.77□□□□□ -2.13
USE1YGL098W MEC1P38111 2368 aa1.77□□□□□ -2.13
USE1YGL098W YPR117WQ06116 2489 aa1.77□□□□□ -2.13
USE1YGL098W Q0017Q9ZZX8 53 aa1.72□□□□□ -2.13
USE1YGL098W TOR2P32600 2474 aaKnown RBP1.65□□□□□ -2.14
USE1YGL098W YOL164W-AQ3E7A5 60 aa1.63□□□□□ -2.15
USE1YGL098W TEL1P38110 2787 aa1.59□□□□□ -2.15
USE1YGL098W NUM1Q00402 2748 aa1.55□□□□□ -2.16
USE1YGL098W YHR050W-AQ05451 56 aa1.51□□□□□ -2.17
USE1YGL098W TOR1P35169 2470 aa1.51□□□□□ -2.17
USE1YGL098W YHR086W-AQ3E746 53 aa1.5□□□□□ -2.17
USE1YGL098W DYN1P36022 4092 aa1.47□□□□□ -2.17
USE1YGL098W YLR157W-EP0CF00 54 aa1.43□□□□□ -2.18
USE1YGL098W RPS29AP41057 56 aaKnown RBP1.41□□□□□ -2.18
USE1YGL098W CUP1-1P0CX80 61 aa1.4□□□□□ -2.19
USE1YGL098W CUP1-2P0CX81 61 aa1.4□□□□□ -2.19
USE1YGL098W RPS29BP41058 56 aaKnown RBP1.28□□□□□ -2.2
USE1YGL098W MDN1Q12019 4910 aaKnown RBP1.23□□□□□ -2.21
Retrieved 63 of 5,963 RNA–protein pairs in 65.3 ms