RNA–Protein interactions for RNA: YMR118C

SHH3, Transcript of Putative mitochondrial inner membrane protein of unknown function, yeast

Gene SHH3, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH3	YMR118C	TY1A-MR1	Q04215	440 aa		4.34	□□□□□ -1.71
SHH3	YMR118C	YDL144C	Q07589	356 aa		4.33	□□□□□ -1.72
SHH3	YMR118C	BDS1	Q08347	646 aa		4.33	□□□□□ -1.72
SHH3	YMR118C	BUD3	P25558	1636 aa		4.32	□□□□□ -1.72
SHH3	YMR118C	DRS2	P39524	1355 aa		4.32	□□□□□ -1.72
SHH3	YMR118C	BNR1	P40450	1375 aa		4.32	□□□□□ -1.72
SHH3	YMR118C	SNF7	P39929	240 aa	Known RBP	4.32	□□□□□ -1.72
SHH3	YMR118C	YIR014W	P40570	242 aa		4.32	□□□□□ -1.72
SHH3	YMR118C	CCT8	P47079	568 aa	Known RBP	4.32	□□□□□ -1.72
SHH3	YMR118C	AIM7	Q12156	149 aa		4.32	□□□□□ -1.72
SHH3	YMR118C	TEC1	P18412	486 aa		4.31	□□□□□ -1.72
SHH3	YMR118C	TCB2	P48231	1178 aa		4.31	□□□□□ -1.72
SHH3	YMR118C	NSG2	P53898	299 aa		4.31	□□□□□ -1.72
SHH3	YMR118C	IOC4	Q04213	475 aa		4.31	□□□□□ -1.72
SHH3	YMR118C	RAD59	Q12223	238 aa		4.31	□□□□□ -1.72
SHH3	YMR118C	RPA190	P10964	1664 aa	Known RBP	4.31	□□□□□ -1.72
SHH3	YMR118C	PDR11	P40550	1411 aa		4.3	□□□□□ -1.72
SHH3	YMR118C	CCP1	P00431	361 aa		4.3	□□□□□ -1.72
SHH3	YMR118C	SPE2	P21182	396 aa		4.3	□□□□□ -1.72
SHH3	YMR118C	SPO14	P36126	1683 aa		4.29	□□□□□ -1.72
SHH3	YMR118C	SUI2	P20459	304 aa	Known RBP	4.29	□□□□□ -1.72
SHH3	YMR118C	ROX1	P25042	368 aa		4.29	□□□□□ -1.72
SHH3	YMR118C	FBP26	P32604	452 aa		4.29	□□□□□ -1.72
SHH3	YMR118C	JJJ3	P47138	172 aa		4.28	□□□□□ -1.72
SHH3	YMR118C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.28	□□□□□ -1.72	not detected
SHH3	YMR118C	THI72	Q08579	599 aa		4.28	□□□□□ -1.72
SHH3	YMR118C	VMR1	P38735	1592 aa		4.27	□□□□□ -1.73
SHH3	YMR118C	CHC1	P22137	1653 aa	Known RBP	4.27	□□□□□ -1.73
SHH3	YMR118C	SBP1	P10080	294 aa	Known RBP	4.27	□□□□□ -1.73
SHH3	YMR118C	STE6	P12866	1290 aa		4.27	□□□□□ -1.73
SHH3	YMR118C	PCT1	P13259	424 aa		4.27	□□□□□ -1.73
SHH3	YMR118C	MPP10	P47083	593 aa	Known RBP	4.27	□□□□□ -1.73
SHH3	YMR118C	NAM8	Q00539	523 aa	Known RBP	4.27	□□□□□ -1.73
SHH3	YMR118C	YPR084W	Q06821	456 aa		4.27	□□□□□ -1.73
SHH3	YMR118C	CDC19	P00549	500 aa	Known RBP	4.26	□□□□□ -1.73
SHH3	YMR118C	RAD2	P07276	1031 aa		4.26	□□□□□ -1.73
SHH3	YMR118C	GUT2	P32191	649 aa		4.26	□□□□□ -1.73
SHH3	YMR118C	IML1	P47170	1584 aa		4.26	□□□□□ -1.73
SHH3	YMR118C	DNF2	Q12675	1612 aa		4.25	□□□□□ -1.73
SHH3	YMR118C	AI1	P03875	834 aa		4.25	□□□□□ -1.73
SHH3	YMR118C	YEF3	P16521	1044 aa	Known RBP	4.25	□□□□□ -1.73
SHH3	YMR118C	VPS24	P36095	224 aa	Known RBP	4.25	□□□□□ -1.73
SHH3	YMR118C	DJP1	P40564	432 aa		4.25	□□□□□ -1.73
SHH3	YMR118C	YFL066C	P43538	392 aa		4.25	□□□□□ -1.73
SHH3	YMR118C	ISU1	Q03020	165 aa		4.25	□□□□□ -1.73
SHH3	YMR118C	ATG20	Q07528	640 aa		4.25	□□□□□ -1.73
SHH3	YMR118C	LEO1	P38439	464 aa		4.24	□□□□□ -1.73
SHH3	YMR118C	SLN1	P39928	1220 aa	Predicted RBP	4.24	□□□□□ -1.73
SHH3	YMR118C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
SHH3	YMR118C	VTC4	P47075	721 aa		4.24	□□□□□ -1.73
SHH3	YMR118C	SSA2	P10592	639 aa	Known RBP	4.23	□□□□□ -1.73
SHH3	YMR118C	MAK16	P10962	306 aa	Predicted RBP	4.23	□□□□□ -1.73
SHH3	YMR118C	YAP3	P38749	330 aa		4.23	□□□□□ -1.73
SHH3	YMR118C	DLD3	P39976	496 aa	Known RBP	4.23	□□□□□ -1.73
SHH3	YMR118C	CHZ1	P40019	153 aa	Predicted RBP	4.23	□□□□□ -1.73
SHH3	YMR118C	RTR1	P40084	226 aa	Predicted RBP	4.23	□□□□□ -1.73
SHH3	YMR118C	CUZ1	P53899	274 aa		4.23	□□□□□ -1.73
SHH3	YMR118C	TAF8	Q03750	510 aa		4.23	□□□□□ -1.73
SHH3	YMR118C	EDE1	P34216	1381 aa		4.23	□□□□□ -1.73
SHH3	YMR118C	DOP1	Q03921	1698 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	RPP2B	P02400	110 aa	Known RBP	4.22	□□□□□ -1.73
SHH3	YMR118C	DAL5	P15365	543 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	MSP1	P28737	362 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	DAL1	P32375	460 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	YIL092W	P40497	633 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	SAP155	P43612	1002 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	STE20	Q03497	939 aa	Known RBP	4.22	□□□□□ -1.73
SHH3	YMR118C	KRE5	P22023	1365 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	NUP192	P47054	1683 aa		4.22	□□□□□ -1.73
SHH3	YMR118C	MET5	P47169	1442 aa		4.21	□□□□□ -1.73
SHH3	YMR118C	HAP1	P0CE41	1502 aa		4.21	□□□□□ -1.73
SHH3	YMR118C	NOT3	P06102	836 aa	Known RBP	4.21	□□□□□ -1.74
SHH3	YMR118C	CEM1	P39525	442 aa		4.21	□□□□□ -1.74
SHH3	YMR118C	POL32	P47110	350 aa		4.21	□□□□□ -1.74
SHH3	YMR118C	LSP1	Q12230	341 aa	Known RBP	4.21	□□□□□ -1.74
SHH3	YMR118C	TRM3	Q07527	1436 aa		4.21	□□□□□ -1.74
SHH3	YMR118C	SIR4	P11978	1358 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	YML133C	Q03099	1374 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	YLL067C	Q07888	1374 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	YLL066C	Q99208	1374 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	QCR6	P00127	147 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	NAP1	P25293	417 aa	Known RBP	4.2	□□□□□ -1.74
SHH3	YMR118C	ARL1	P38116	183 aa	Known RBP	4.2	□□□□□ -1.74
SHH3	YMR118C	RRP46	P53256	223 aa	Predicted RBP	4.2	□□□□□ -1.74
SHH3	YMR118C	NAF1	P53919	492 aa	Known RBP	4.2	□□□□□ -1.74
SHH3	YMR118C	FRA1	Q07825	749 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	YPR053C	Q6Q5F3	151 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	RAD9	P14737	1309 aa		4.2	□□□□□ -1.74
SHH3	YMR118C	NUP188	P52593	1655 aa	Known RBP	4.19	□□□□□ -1.74
SHH3	YMR118C	BCK1	Q01389	1478 aa		4.19	□□□□□ -1.74
SHH3	YMR118C	YRF1-4	O13559	1382 aa		4.19	□□□□□ -1.74
SHH3	YMR118C	SNF2	P22082	1703 aa		4.19	□□□□□ -1.74
SHH3	YMR118C	KAR2	P16474	682 aa	Known RBP	4.19	□□□□□ -1.74
SHH3	YMR118C	PRD1	P25375	712 aa		4.19	□□□□□ -1.74
SHH3	YMR118C	ALD4	P46367	519 aa	Known RBP	4.19	□□□□□ -1.74
SHH3	YMR118C	THI22	Q06490	572 aa		4.19	□□□□□ -1.74
SHH3	YMR118C	KIN1	P13185	1064 aa		4.18	□□□□□ -1.74
SHH3	YMR118C	SKN7	P38889	622 aa		4.18	□□□□□ -1.74
SHH3	YMR118C	HEF3	P53978	1044 aa	Known RBP	4.18	□□□□□ -1.74
SHH3	YMR118C	YMR265C	Q03508	461 aa	Known RBP	4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms