RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	PSF3	Q12146	194 aa		18.63	■□□□□ 0.57
CCC1	YLR220W	GAS5	Q08193	484 aa		18.62	■□□□□ 0.57
CCC1	YLR220W	RAD50	P12753	1312 aa		18.62	■□□□□ 0.57
CCC1	YLR220W	TIF4632	P39936	914 aa	Known RBP	18.6	■□□□□ 0.57
CCC1	YLR220W	RRI2	Q12348	645 aa		18.6	■□□□□ 0.57
CCC1	YLR220W	PRP42	Q03776	544 aa	Known RBP	18.59	■□□□□ 0.57
CCC1	YLR220W	EPS1	P40557	701 aa		18.58	■□□□□ 0.56
CCC1	YLR220W	TOS4	Q06266	489 aa		18.58	■□□□□ 0.56
CCC1	YLR220W	MRPS35	P53292	345 aa		18.57	■□□□□ 0.56
CCC1	YLR220W	BRE1	Q07457	700 aa	Known RBP	18.57	■□□□□ 0.56
CCC1	YLR220W	WRS1	Q12109	432 aa	Known RBP	18.57	■□□□□ 0.56
CCC1	YLR220W	YFH7	P43591	353 aa		18.56	■□□□□ 0.56
CCC1	YLR220W	RRG1	Q12167	365 aa	Predicted RBP	18.56	■□□□□ 0.56
CCC1	YLR220W	JJJ2	P46997	583 aa		18.55	■□□□□ 0.56
CCC1	YLR220W	MSM1	P22438	575 aa		18.54	■□□□□ 0.56
CCC1	YLR220W	INM2	Q05533	292 aa		18.54	■□□□□ 0.56
CCC1	YLR220W	ARG82	P07250	355 aa		18.53	■□□□□ 0.56
CCC1	YLR220W	PIB2	P53191	635 aa		18.53	■□□□□ 0.56
CCC1	YLR220W	YIR042C	P40586	236 aa		18.52	■□□□□ 0.56
CCC1	YLR220W	CYB2	P00175	591 aa		18.51	■□□□□ 0.55
CCC1	YLR220W	KTR1	P27810	393 aa	Known RBP	18.51	■□□□□ 0.55
CCC1	YLR220W	NPL4	P33755	580 aa		18.51	■□□□□ 0.55
CCC1	YLR220W	AFG2	P32794	780 aa		18.5	■□□□□ 0.55
CCC1	YLR220W	RPT3	P33298	428 aa	Known RBP	18.5	■□□□□ 0.55
CCC1	YLR220W	OSH3	P38713	996 aa	Known RBP	18.5	■□□□□ 0.55
CCC1	YLR220W	GSM1	P42950	618 aa		18.5	■□□□□ 0.55
CCC1	YLR220W	RMD1	Q03441	430 aa		18.5	■□□□□ 0.55
CCC1	YLR220W	SLI15	P38283	698 aa		18.49	■□□□□ 0.55
CCC1	YLR220W	CRF1	Q04930	467 aa		18.49	■□□□□ 0.55
CCC1	YLR220W	FLO11	P08640	1367 aa		18.48	■□□□□ 0.55
CCC1	YLR220W	SNF3	P10870	884 aa		18.48	■□□□□ 0.55
CCC1	YLR220W	GLC3	P32775	704 aa		18.47	■□□□□ 0.55
CCC1	YLR220W	PTK1	P36002	662 aa	Predicted RBP	18.47	■□□□□ 0.55
CCC1	YLR220W	GEF1	P37020	779 aa		18.47	■□□□□ 0.55
CCC1	YLR220W	ACK1	Q07622	623 aa	Predicted RBP	18.47	■□□□□ 0.55
CCC1	YLR220W	YLR278C	Q05854	1341 aa		18.47	■□□□□ 0.55
CCC1	YLR220W	VAS1	P07806	1104 aa	Known RBP	18.46	■□□□□ 0.55
CCC1	YLR220W	GRX7	P38068	203 aa		18.46	■□□□□ 0.55
CCC1	YLR220W	RPC31	P17890	251 aa		18.45	■□□□□ 0.54
CCC1	YLR220W	PBY1	P38254	753 aa		18.45	■□□□□ 0.54
CCC1	YLR220W	BBC1	P47068	1157 aa		18.45	■□□□□ 0.54
CCC1	YLR220W	GCR2	Q01722	534 aa		18.45	■□□□□ 0.54
CCC1	YLR220W	RIM20	Q12033	661 aa		18.45	■□□□□ 0.54
CCC1	YLR220W	RPS7A	P26786	190 aa	Known RBP	18.44	■□□□□ 0.54
CCC1	YLR220W	RTG2	P32608	588 aa	Known RBP	18.44	■□□□□ 0.54
CCC1	YLR220W	PKH3	Q03306	898 aa	Predicted RBP	18.44	■□□□□ 0.54
CCC1	YLR220W	OPI1	P21957	404 aa		18.43	■□□□□ 0.54
CCC1	YLR220W	BRN1	P38170	754 aa		18.43	■□□□□ 0.54
CCC1	YLR220W	NOP2	P40991	618 aa	Known RBP	18.43	■□□□□ 0.54
CCC1	YLR220W	KAR5	Q04746	504 aa		18.43	■□□□□ 0.54
CCC1	YLR220W	GAP1	P19145	602 aa	Predicted RBP	18.42	■□□□□ 0.54
CCC1	YLR220W	AAP1	P37898	856 aa	Known RBP	18.42	■□□□□ 0.54
CCC1	YLR220W	YJL171C	P46992	396 aa		18.42	■□□□□ 0.54
CCC1	YLR220W	YGR117C	P53270	476 aa		18.42	■□□□□ 0.54
CCC1	YLR220W	BOI1	P38041	980 aa	Known RBP	18.41	■□□□□ 0.54
CCC1	YLR220W	IOC3	P43596	787 aa		18.41	■□□□□ 0.54
CCC1	YLR220W	TIM50	Q02776	476 aa		18.41	■□□□□ 0.54
CCC1	YLR220W	YMR147W	P40218	223 aa	Known RBP	18.4	■□□□□ 0.54
CCC1	YLR220W	FET4	P40988	552 aa		18.4	■□□□□ 0.54
CCC1	YLR220W	PUS6	P53294	404 aa		18.4	■□□□□ 0.54
CCC1	YLR220W	TRM44	Q02648	567 aa	Known RBP	18.4	■□□□□ 0.54
CCC1	YLR220W	APL6	P46682	809 aa		18.39	■□□□□ 0.53
CCC1	YLR220W	LAM4	P38800	1345 aa		18.39	■□□□□ 0.53
CCC1	YLR220W	STV1	P37296	890 aa		18.38	■□□□□ 0.53
CCC1	YLR220W	STM1	P39015	273 aa	Known RBP	18.38	■□□□□ 0.53
CCC1	YLR220W	UTP7	P40055	554 aa	Known RBP	18.38	■□□□□ 0.53
CCC1	YLR220W	PUS5	Q06244	254 aa		18.38	■□□□□ 0.53
CCC1	YLR220W	THS1	P04801	734 aa	Known RBP	18.37	■□□□□ 0.53
CCC1	YLR220W	MDL2	P33311	773 aa		18.37	■□□□□ 0.53
CCC1	YLR220W	IRC8	P47046	822 aa		18.37	■□□□□ 0.53
CCC1	YLR220W	VPS4	P52917	437 aa		18.37	■□□□□ 0.53
CCC1	YLR220W	MTC3	P53077	123 aa		18.37	■□□□□ 0.53
CCC1	YLR220W	TAH18	Q12181	623 aa		18.37	■□□□□ 0.53
CCC1	YLR220W	FPR4	Q06205	392 aa	Predicted RBP	18.36	■□□□□ 0.53
CCC1	YLR220W	DLD1	P32891	587 aa		18.35	■□□□□ 0.53
CCC1	YLR220W	NSG2	P53898	299 aa		18.34	■□□□□ 0.53
CCC1	YLR220W	FLO1	P32768	1537 aa		18.33	■□□□□ 0.53
CCC1	YLR220W	ENP2	P48234	707 aa	Known RBP	18.33	■□□□□ 0.52
CCC1	YLR220W	HXT13	P39924	564 aa		18.32	■□□□□ 0.52
CCC1	YLR220W	EMP47	P43555	445 aa		18.32	■□□□□ 0.52
CCC1	YLR220W	HXT17	P53631	564 aa		18.32	■□□□□ 0.52
CCC1	YLR220W	HPR1	P17629	752 aa	Known RBP	18.31	■□□□□ 0.52
CCC1	YLR220W	PIP2	P52960	996 aa		18.31	■□□□□ 0.52
CCC1	YLR220W	MET1	P36150	593 aa		18.3	■□□□□ 0.52
CCC1	YLR220W	PPM2	Q08282	695 aa		18.3	■□□□□ 0.52
CCC1	YLR220W	PEX21	P50091	288 aa		18.29	■□□□□ 0.52
CCC1	YLR220W	SEN54	Q02825	467 aa	Predicted RBP	18.29	■□□□□ 0.52
CCC1	YLR220W	COQ1	P18900	473 aa		18.28	■□□□□ 0.52
CCC1	YLR220W	AAD16	Q02895	342 aa		18.27	■□□□□ 0.52
CCC1	YLR220W	AIM7	Q12156	149 aa		18.27	■□□□□ 0.52
CCC1	YLR220W	PCL8	Q08966	492 aa		18.26	■□□□□ 0.51
CCC1	YLR220W	YIR014W	P40570	242 aa		18.25	■□□□□ 0.51
CCC1	YLR220W	SSF2	Q12153	453 aa	Predicted RBP	18.25	■□□□□ 0.51
CCC1	YLR220W	CBP1	P07252	654 aa		18.23	■□□□□ 0.51
CCC1	YLR220W	TPM1	P17536	199 aa	Known RBP	18.23	■□□□□ 0.51
CCC1	YLR220W	SSA4	P22202	642 aa	Known RBP	18.23	■□□□□ 0.51
CCC1	YLR220W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	18.23	■□□□□ 0.51	not detected
CCC1	YLR220W	RTS1	P38903	757 aa		18.23	■□□□□ 0.51
CCC1	YLR220W	MSH4	P40965	878 aa	Predicted RBP	18.23	■□□□□ 0.51
CCC1	YLR220W	PEA2	P40091	420 aa		18.22	■□□□□ 0.51

Retrieved 100 of 5,963 RNA–protein pairs in 23.2 ms