RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	MSM1	P22438	575 aa		5.82	□□□□□ -1.48
DOA1	YKL213C	SPT16	P32558	1035 aa	Known RBP	5.82	□□□□□ -1.48
DOA1	YKL213C	RIX1	P38883	763 aa	Predicted RBP	5.82	□□□□□ -1.48
DOA1	YKL213C	TIF4632	P39936	914 aa	Known RBP	5.82	□□□□□ -1.48
DOA1	YKL213C	FAS2	P19097	1887 aa	Known RBP	5.81	□□□□□ -1.48
DOA1	YKL213C	BRN1	P38170	754 aa		5.81	□□□□□ -1.48
DOA1	YKL213C	SSF1	P38789	453 aa	Predicted RBP	5.81	□□□□□ -1.48
DOA1	YKL213C	GAP1	P19145	602 aa	Predicted RBP	5.81	□□□□□ -1.48
DOA1	YKL213C	NMD2	P38798	1089 aa	Known RBP	5.81	□□□□□ -1.48
DOA1	YKL213C	VHR2	P40041	505 aa		5.81	□□□□□ -1.48
DOA1	YKL213C	SNU66	Q12420	587 aa	Predicted RBP	5.81	□□□□□ -1.48
DOA1	YKL213C	DPH6	Q12429	685 aa		5.81	□□□□□ -1.48
DOA1	YKL213C	FET4	P40988	552 aa		5.8	□□□□□ -1.48
DOA1	YKL213C	AIM7	Q12156	149 aa		5.8	□□□□□ -1.48
DOA1	YKL213C	GLC3	P32775	704 aa		5.8	□□□□□ -1.48
DOA1	YKL213C	OSW7	P43611	510 aa		5.8	□□□□□ -1.48
DOA1	YKL213C	TPO2	P53283	614 aa		5.8	□□□□□ -1.48
DOA1	YKL213C	NGR1	P32831	672 aa	Known RBP	5.79	□□□□□ -1.48
DOA1	YKL213C	ICP55	P40051	511 aa		5.79	□□□□□ -1.48
DOA1	YKL213C	SET4	P42948	560 aa		5.79	□□□□□ -1.48
DOA1	YKL213C	TIM50	Q02776	476 aa		5.79	□□□□□ -1.48
DOA1	YKL213C	THI3	Q07471	609 aa		5.79	□□□□□ -1.48
DOA1	YKL213C	ADR1	P07248	1323 aa		5.79	□□□□□ -1.48
DOA1	YKL213C	MGM1	P32266	881 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	ATG36	P46983	293 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	TRM44	Q02648	567 aa	Known RBP	5.78	□□□□□ -1.48
DOA1	YKL213C	GYP5	Q12344	894 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	NCB2	Q92317	146 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	KRE2	P27809	442 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	SLA1	P32790	1244 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	RTS3	P53289	263 aa		5.78	□□□□□ -1.48
DOA1	YKL213C	FPR4	Q06205	392 aa	Predicted RBP	5.78	□□□□□ -1.48
DOA1	YKL213C	HKR1	P41809	1802 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	BDP1	P46678	594 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	SRC1	Q03707	834 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	GAS5	Q08193	484 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	FIG2	P25653	1609 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	SEC18	P18759	758 aa	Known RBP	5.77	□□□□□ -1.49
DOA1	YKL213C	SPL2	P38839	148 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	YIL089W	P40500	205 aa		5.77	□□□□□ -1.49
DOA1	YKL213C	RRG1	Q12167	365 aa	Predicted RBP	5.77	□□□□□ -1.49
DOA1	YKL213C	POM152	P39685	1337 aa		5.76	□□□□□ -1.49
DOA1	YKL213C	AFG2	P32794	780 aa		5.76	□□□□□ -1.49
DOA1	YKL213C	RFC1	P38630	861 aa	Known RBP	5.76	□□□□□ -1.49
DOA1	YKL213C	EMP47	P43555	445 aa		5.76	□□□□□ -1.49
DOA1	YKL213C	VPS4	P52917	437 aa		5.76	□□□□□ -1.49
DOA1	YKL213C	YGR117C	P53270	476 aa		5.76	□□□□□ -1.49
DOA1	YKL213C	RPT4	P53549	437 aa	Known RBP	5.76	□□□□□ -1.49
DOA1	YKL213C	DUS1	P53759	423 aa	Known RBP	5.76	□□□□□ -1.49
DOA1	YKL213C	ECM16	Q04217	1267 aa	Known RBP	5.76	□□□□□ -1.49
DOA1	YKL213C	UBX2	Q04228	584 aa		5.76	□□□□□ -1.49
DOA1	YKL213C	AI2	P03876	854 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	ETP1	P38748	585 aa	Known RBP	5.75	□□□□□ -1.49
DOA1	YKL213C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.75	□□□□□ -1.49	not detected
DOA1	YKL213C	YGL242C	P53066	181 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	PIL1	P53252	339 aa	Known RBP	5.75	□□□□□ -1.49
DOA1	YKL213C	NKP2	Q06162	153 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	NOT3	P06102	836 aa	Known RBP	5.75	□□□□□ -1.49
DOA1	YKL213C	CDC16	P09798	840 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	STV1	P37296	890 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	PEA2	P40091	420 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	CRF1	Q04930	467 aa		5.75	□□□□□ -1.49
DOA1	YKL213C	PDR18	P53756	1333 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	HPR1	P17629	752 aa	Known RBP	5.74	□□□□□ -1.49
DOA1	YKL213C	KTR3	P38130	404 aa	Predicted RBP	5.74	□□□□□ -1.49
DOA1	YKL213C	ECM21	P38167	1117 aa	Known RBP	5.74	□□□□□ -1.49
DOA1	YKL213C	GSM1	P42950	618 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	MLC1	P53141	149 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	YNL193W	P53870	558 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	CWC15	Q03772	175 aa	Known RBP	5.74	□□□□□ -1.49
DOA1	YKL213C	RPN7	Q06103	429 aa	Known RBP	5.74	□□□□□ -1.49
DOA1	YKL213C	DUR1,2	P32528	1835 aa	Known RBP	5.74	□□□□□ -1.49
DOA1	YKL213C	YGR130C	P53278	816 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	YNL011C	P53980	444 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	IRC4	Q03036	179 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	RRI2	Q12348	645 aa		5.74	□□□□□ -1.49
DOA1	YKL213C	LCB1	P25045	558 aa	Known RBP	5.73	□□□□□ -1.49
DOA1	YKL213C	GLO3	P38682	493 aa	Known RBP	5.73	□□□□□ -1.49
DOA1	YKL213C	ALO1	P54783	526 aa	Known RBP	5.73	□□□□□ -1.49
DOA1	YKL213C	PIF1	P07271	859 aa		5.72	□□□□□ -1.49
DOA1	YKL213C	ISW1	P38144	1129 aa		5.72	□□□□□ -1.49
DOA1	YKL213C	HAL5	P38970	855 aa	Known RBP	5.72	□□□□□ -1.49
DOA1	YKL213C	SEN54	Q02825	467 aa	Predicted RBP	5.72	□□□□□ -1.49
DOA1	YKL213C	RAD50	P12753	1312 aa		5.72	□□□□□ -1.49
DOA1	YKL213C	PRP42	Q03776	544 aa	Known RBP	5.72	□□□□□ -1.49
DOA1	YKL213C	GRX3	Q03835	250 aa		5.72	□□□□□ -1.49
DOA1	YKL213C	TOS4	Q06266	489 aa		5.72	□□□□□ -1.49
DOA1	YKL213C	HSC82	P15108	705 aa	Known RBP	5.71	□□□□□ -1.5
DOA1	YKL213C	EPS1	P40557	701 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	RMD1	Q03441	430 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	YML020W	Q03722	664 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	BRE1	Q07457	700 aa	Known RBP	5.71	□□□□□ -1.5
DOA1	YKL213C	TYW1	Q08960	810 aa	Known RBP	5.71	□□□□□ -1.5
DOA1	YKL213C	PSF3	Q12146	194 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	FLO11	P08640	1367 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	CBP1	P07252	654 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	SSP1	P38871	571 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	YIR042C	P40586	236 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	MRPS35	P53292	345 aa		5.71	□□□□□ -1.5
DOA1	YKL213C	YSH1	Q06224	779 aa	Predicted RBP	5.71	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms