RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	KRE33	P53914	1056 aa	Known RBP	3.49	□□□□□ -1.85
SNU114	YKL173W	CUS1	Q02554	436 aa	Predicted RBP	3.49	□□□□□ -1.85
SNU114	YKL173W	TY1A-DR2	Q03964	440 aa	Known RBP	3.49	□□□□□ -1.85
SNU114	YKL173W	PNP1	Q05788	311 aa		3.49	□□□□□ -1.85
SNU114	YKL173W	TRL1	P09880	827 aa	Known RBP	3.48	□□□□□ -1.85
SNU114	YKL173W	ADE12	P80210	433 aa	Known RBP	3.48	□□□□□ -1.85
SNU114	YKL173W	QDR2	P40474	542 aa		3.48	□□□□□ -1.85
SNU114	YKL173W	ITC1	P53125	1264 aa		3.48	□□□□□ -1.85
SNU114	YKL173W	YNR040W	P53736	256 aa		3.48	□□□□□ -1.85
SNU114	YKL173W	GPM1	P00950	247 aa	Known RBP	3.47	□□□□□ -1.85
SNU114	YKL173W	CEM1	P39525	442 aa		3.47	□□□□□ -1.85
SNU114	YKL173W	YMR265C	Q03508	461 aa	Known RBP	3.47	□□□□□ -1.85
SNU114	YKL173W	APM2	P38700	605 aa		3.47	□□□□□ -1.85
SNU114	YKL173W	YER156C	P40093	338 aa	Known RBP	3.47	□□□□□ -1.85
SNU114	YKL173W	PUN1	Q06991	263 aa		3.47	□□□□□ -1.85
SNU114	YKL173W	YOR296W	Q08748	1289 aa		3.47	□□□□□ -1.85
SNU114	YKL173W	STB3	Q12427	513 aa		3.47	□□□□□ -1.85
SNU114	YKL173W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.46	□□□□□ -1.85	not detected
SNU114	YKL173W	KNS1	P32350	737 aa	Predicted RBP	3.46	□□□□□ -1.85
SNU114	YKL173W	RRN6	P32786	894 aa		3.46	□□□□□ -1.85
SNU114	YKL173W	ISC10	P32645	267 aa		3.46	□□□□□ -1.86
SNU114	YKL173W	RGD2	P43556	714 aa		3.46	□□□□□ -1.86
SNU114	YKL173W	CWH41	P53008	833 aa		3.46	□□□□□ -1.86
SNU114	YKL173W	HEH2	Q03281	663 aa		3.46	□□□□□ -1.86
SNU114	YKL173W	PDC5	P16467	563 aa	Known RBP	3.45	□□□□□ -1.86
SNU114	YKL173W	FPS1	P23900	669 aa		3.45	□□□□□ -1.86
SNU114	YKL173W	CDC3	P32457	520 aa	Known RBP	3.45	□□□□□ -1.86
SNU114	YKL173W	MTO1	P53070	669 aa		3.45	□□□□□ -1.86
SNU114	YKL173W	RPP1A	P05318	106 aa	Predicted RBP	3.45	□□□□□ -1.86
SNU114	YKL173W	MSN1	P22148	382 aa		3.45	□□□□□ -1.86
SNU114	YKL173W	DYS1	P38791	387 aa		3.45	□□□□□ -1.86
SNU114	YKL173W	MNL2	Q12205	849 aa		3.45	□□□□□ -1.86
SNU114	YKL173W	IDI1	P15496	288 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	GIP1	P38229	639 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	BSD2	P38356	321 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	PRK1	P40494	810 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	HAT1	Q12341	374 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	IPL1	P38991	367 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	YTA6	P40328	754 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	EMG1	Q06287	252 aa	Known RBP	3.44	□□□□□ -1.86
SNU114	YKL173W	MRP10	O75012	95 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	YIL165C	P40446	119 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	FOX2	Q02207	900 aa	Known RBP	3.44	□□□□□ -1.86
SNU114	YKL173W	RRP15	Q06511	250 aa	Predicted RBP	3.44	□□□□□ -1.86
SNU114	YKL173W	AIM44	Q99299	758 aa		3.44	□□□□□ -1.86
SNU114	YKL173W	ATG1	P53104	897 aa		3.43	□□□□□ -1.86
SNU114	YKL173W	RPL34A	P87262	121 aa	Predicted RBP	3.43	□□□□□ -1.86
SNU114	YKL173W	HVG1	P0CE11	249 aa		3.43	□□□□□ -1.86
SNU114	YKL173W	MDJ1	P35191	511 aa		3.43	□□□□□ -1.86
SNU114	YKL173W	NTA1	P40354	457 aa		3.43	□□□□□ -1.86
SNU114	YKL173W	HXT8	P40886	569 aa		3.43	□□□□□ -1.86
SNU114	YKL173W	RPB10	P22139	70 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	LDH1	P38139	375 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	ISW1	P38144	1129 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	HEM3	P28789	327 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	SKN7	P38889	622 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	ICP55	P40051	511 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	MDJ2	P42834	146 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	SNU71	P53207	620 aa	Known RBP	3.42	□□□□□ -1.86
SNU114	YKL173W	CTR9	P89105	1077 aa		3.42	□□□□□ -1.86
SNU114	YKL173W	NCL1	P38205	684 aa	Known RBP	3.41	□□□□□ -1.86
SNU114	YKL173W	ACF4	P47129	309 aa		3.41	□□□□□ -1.86
SNU114	YKL173W	RSC4	Q02206	625 aa		3.41	□□□□□ -1.86
SNU114	YKL173W	ATE1	P16639	503 aa		3.41	□□□□□ -1.86
SNU114	YKL173W	AMN1	P38285	549 aa	Predicted RBP	3.41	□□□□□ -1.86
SNU114	YKL173W	SBE2	P42223	864 aa	Known RBP	3.41	□□□□□ -1.86
SNU114	YKL173W	SLD2	P34252	453 aa		3.41	□□□□□ -1.86
SNU114	YKL173W	AI1	P03875	834 aa		3.4	□□□□□ -1.86
SNU114	YKL173W	NAR1	P23503	491 aa	Known RBP	3.4	□□□□□ -1.86
SNU114	YKL173W	MCX1	P38323	520 aa	Predicted RBP	3.4	□□□□□ -1.86
SNU114	YKL173W	GIS4	Q04233	774 aa		3.4	□□□□□ -1.86
SNU114	YKL173W	TIF6	Q12522	245 aa	Known RBP	3.4	□□□□□ -1.86
SNU114	YKL173W	FUR4	P05316	633 aa	Known RBP	3.4	□□□□□ -1.87
SNU114	YKL173W	NOP7	P53261	605 aa	Known RBP	3.4	□□□□□ -1.87
SNU114	YKL173W	GPI13	Q07830	1017 aa		3.4	□□□□□ -1.87
SNU114	YKL173W	WHI5	Q12416	295 aa		3.4	□□□□□ -1.87
SNU114	YKL173W	GLT1	Q12680	2145 aa	Known RBP	3.39	□□□□□ -1.87
SNU114	YKL173W	COB	P00163	385 aa		3.39	□□□□□ -1.87
SNU114	YKL173W	YCK2	P23292	546 aa	Known RBP	3.39	□□□□□ -1.87
SNU114	YKL173W	QDR1	P40475	563 aa		3.39	□□□□□ -1.87
SNU114	YKL173W	BIO5	P53744	561 aa	Known RBP	3.39	□□□□□ -1.87
SNU114	YKL173W	OCA5	P38738	679 aa		3.39	□□□□□ -1.87
SNU114	YKL173W	ERP5	P38819	212 aa		3.39	□□□□□ -1.87
SNU114	YKL173W	PHM7	Q12252	991 aa		3.39	□□□□□ -1.87
SNU114	YKL173W	TFA2	P36145	328 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	MET10	P39692	1035 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	INP51	P40559	946 aa	Known RBP	3.38	□□□□□ -1.87
SNU114	YKL173W	ALD3	P54114	506 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	KAR5	Q04746	504 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	TDA6	Q06466	467 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	YBL113C	Q7M4S9	792 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	FRT1	Q99332	602 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	IRS4	P36115	615 aa	Known RBP	3.38	□□□□□ -1.87
SNU114	YKL173W	PSY2	P40164	858 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	THI72	Q08579	599 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	SLP1	Q12232	587 aa		3.38	□□□□□ -1.87
SNU114	YKL173W	KOG1	P38873	1557 aa		3.37	□□□□□ -1.87
SNU114	YKL173W	TRS120	Q04183	1289 aa		3.37	□□□□□ -1.87
SNU114	YKL173W	SMC1	P32908	1225 aa		3.37	□□□□□ -1.87
SNU114	YKL173W	DUR3	P33413	735 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms