RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W SET4P42948 560 aa5.48□□□□□ -1.53
SSH4YKL124W YPP1P46951 817 aa5.48□□□□□ -1.53
SSH4YKL124W YMR1P47147 688 aaKnown RBP RIP-Chip data5.48□□□□□ -1.53not detected
SSH4YKL124W SUP35P05453 685 aaKnown RBP5.48□□□□□ -1.53
SSH4YKL124W DBP1P24784 617 aaKnown RBP5.48□□□□□ -1.53
SSH4YKL124W VHR2P40041 505 aa5.48□□□□□ -1.53
SSH4YKL124W CRF1Q04930 467 aa5.48□□□□□ -1.53
SSH4YKL124W TYW1Q08960 810 aaKnown RBP5.48□□□□□ -1.53
SSH4YKL124W RRG1Q12167 365 aaPredicted RBP5.48□□□□□ -1.53
SSH4YKL124W SWE1P32944 819 aa5.47□□□□□ -1.53
SSH4YKL124W VPS29P38759 282 aa5.47□□□□□ -1.53
SSH4YKL124W EMP47P43555 445 aa5.47□□□□□ -1.53
SSH4YKL124W YML020WQ03722 664 aa5.47□□□□□ -1.53
SSH4YKL124W NOP8Q08287 484 aaPredicted RBP5.47□□□□□ -1.53
SSH4YKL124W POM152P39685 1337 aa5.47□□□□□ -1.53
SSH4YKL124W MGM1P32266 881 aa5.46□□□□□ -1.54
SSH4YKL124W ETP1P38748 585 aaKnown RBP5.46□□□□□ -1.54
SSH4YKL124W SPL2P38839 148 aa5.46□□□□□ -1.54
SSH4YKL124W UBP12P39538 1254 aa5.46□□□□□ -1.54
SSH4YKL124W BOI2P39969 1040 aa5.46□□□□□ -1.54
SSH4YKL124W YGR117CP53270 476 aa5.46□□□□□ -1.54
SSH4YKL124W RPT4P53549 437 aaKnown RBP5.46□□□□□ -1.54
SSH4YKL124W DUR1,2P32528 1835 aaKnown RBP5.46□□□□□ -1.54
SSH4YKL124W RPS19AP07280 144 aaKnown RBP5.45□□□□□ -1.54
SSH4YKL124W RPS19BP07281 144 aaPredicted RBP5.45□□□□□ -1.54
SSH4YKL124W RAD24P32641 659 aa5.45□□□□□ -1.54
SSH4YKL124W NGR1P32831 672 aaKnown RBP5.45□□□□□ -1.54
SSH4YKL124W BRL1P38770 471 aa5.45□□□□□ -1.54
SSH4YKL124W TIF11P38912 153 aaKnown RBP5.45□□□□□ -1.54
SSH4YKL124W NUG1P40010 520 aaKnown RBP5.45□□□□□ -1.54
SSH4YKL124W PEA2P40091 420 aa5.45□□□□□ -1.54
SSH4YKL124W YIL089WP40500 205 aa5.45□□□□□ -1.54
SSH4YKL124W TRM44Q02648 567 aaKnown RBP5.45□□□□□ -1.54
SSH4YKL124W THI3Q07471 609 aa5.45□□□□□ -1.54
SSH4YKL124W PSF3Q12146 194 aa5.45□□□□□ -1.54
SSH4YKL124W ADR1P07248 1323 aa5.45□□□□□ -1.54
SSH4YKL124W GAP1P19145 602 aaPredicted RBP5.45□□□□□ -1.54
SSH4YKL124W AFG2P32794 780 aa5.45□□□□□ -1.54
SSH4YKL124W YGR122WP53272 402 aa5.45□□□□□ -1.54
SSH4YKL124W GAS5Q08193 484 aa5.45□□□□□ -1.54
SSH4YKL124W RPS0BP46654 252 aaKnown RBP5.44□□□□□ -1.54
SSH4YKL124W ATG36P46983 293 aa5.44□□□□□ -1.54
SSH4YKL124W SRC1Q03707 834 aa5.44□□□□□ -1.54
SSH4YKL124W NAB6Q03735 1134 aaKnown RBP RIP-Chip data5.44□□□□□ -1.54not detected
SSH4YKL124W PRP42Q03776 544 aaKnown RBP5.44□□□□□ -1.54
SSH4YKL124W AIM7Q12156 149 aa5.44□□□□□ -1.54
SSH4YKL124W FLO11P08640 1367 aa5.44□□□□□ -1.54
SSH4YKL124W SWC3P31376 625 aa5.43□□□□□ -1.54
SSH4YKL124W STS1P38637 319 aa5.43□□□□□ -1.54
SSH4YKL124W YJL171CP46992 396 aa5.43□□□□□ -1.54
SSH4YKL124W HGH1P48362 394 aaKnown RBP5.43□□□□□ -1.54
SSH4YKL124W VPS4P52917 437 aa5.43□□□□□ -1.54
SSH4YKL124W CWC15Q03772 175 aaKnown RBP5.43□□□□□ -1.54
SSH4YKL124W CSI1Q04368 295 aa5.43□□□□□ -1.54
SSH4YKL124W ACK1Q07622 623 aaPredicted RBP5.43□□□□□ -1.54
SSH4YKL124W SNU66Q12420 587 aaPredicted RBP5.43□□□□□ -1.54
SSH4YKL124W ARG82P07250 355 aa5.43□□□□□ -1.54
SSH4YKL124W LCB1P25045 558 aaKnown RBP5.43□□□□□ -1.54
SSH4YKL124W STV1P37296 890 aa5.43□□□□□ -1.54
SSH4YKL124W IRC4Q03036 179 aa5.43□□□□□ -1.54
SSH4YKL124W RVB2Q12464 471 aaKnown RBP5.43□□□□□ -1.54
SSH4YKL124W HPR1P17629 752 aaKnown RBP5.42□□□□□ -1.54
SSH4YKL124W SSF1P38789 453 aaPredicted RBP5.42□□□□□ -1.54
SSH4YKL124W DUS1P53759 423 aaKnown RBP5.42□□□□□ -1.54
SSH4YKL124W WRS1Q12109 432 aaKnown RBP5.42□□□□□ -1.54
SSH4YKL124W TOM1Q03280 3268 aa5.41□□□□□ -1.54
SSH4YKL124W EBP2P36049 427 aaKnown RBP5.41□□□□□ -1.54
SSH4YKL124W YIL092WP40497 633 aa5.41□□□□□ -1.54
SSH4YKL124W HXT10P43581 546 aa5.41□□□□□ -1.54
SSH4YKL124W ULI1P43604 169 aa5.41□□□□□ -1.54
SSH4YKL124W RRT6P53117 311 aaPredicted RBP5.41□□□□□ -1.54
SSH4YKL124W MNN4P36044 1178 aa5.4□□□□□ -1.54
SSH4YKL124W BSD2P38356 321 aa5.4□□□□□ -1.54
SSH4YKL124W UTP7P40055 554 aaKnown RBP5.4□□□□□ -1.54
SSH4YKL124W GSM1P42950 618 aa5.4□□□□□ -1.54
SSH4YKL124W JJJ2P46997 583 aa5.4□□□□□ -1.54
SSH4YKL124W SEN54Q02825 467 aaPredicted RBP5.4□□□□□ -1.54
SSH4YKL124W GCD7P32502 381 aaPredicted RBP5.4□□□□□ -1.55
SSH4YKL124W TOS4Q06266 489 aa5.4□□□□□ -1.55
SSH4YKL124W GYP5Q12344 894 aa5.4□□□□□ -1.55
SSH4YKL124W SRF1Q12516 437 aa5.4□□□□□ -1.55
SSH4YKL124W CBP1P07252 654 aa5.39□□□□□ -1.55
SSH4YKL124W PIF1P07271 859 aa5.39□□□□□ -1.55
SSH4YKL124W HVG1P0CE11 249 aa5.39□□□□□ -1.55
SSH4YKL124W VMA1P17255 1071 aaKnown RBP5.39□□□□□ -1.55
SSH4YKL124W RPS7AP26786 190 aaKnown RBP5.39□□□□□ -1.55
SSH4YKL124W YFH7P43591 353 aa5.39□□□□□ -1.55
SSH4YKL124W MTC3P53077 123 aa5.39□□□□□ -1.55
SSH4YKL124W CWC22P53333 577 aaKnown RBP5.39□□□□□ -1.55
SSH4YKL124W YOL036WQ08206 761 aa5.39□□□□□ -1.55
SSH4YKL124W LDB19Q12502 818 aa5.39□□□□□ -1.55
SSH4YKL124W TIF6Q12522 245 aaKnown RBP5.39□□□□□ -1.55
SSH4YKL124W GSC2P40989 1895 aa5.38□□□□□ -1.55
SSH4YKL124W RAD2P07276 1031 aa5.38□□□□□ -1.55
SSH4YKL124W DAL5P15365 543 aa5.38□□□□□ -1.55
SSH4YKL124W GLO3P38682 493 aaKnown RBP5.38□□□□□ -1.55
SSH4YKL124W GIN4Q12263 1142 aa5.38□□□□□ -1.55
SSH4YKL124W CSR2Q12734 1121 aa5.38□□□□□ -1.55
SSH4YKL124W YNG2P38806 282 aaKnown RBP5.37□□□□□ -1.55
SSH4YKL124W GAL2P13181 574 aa5.37□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 82.5 ms