RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W TY1B-LR2P0C2I5 1755 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-LR3P0C2I6 1755 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W TY1B-PR1P0C2I9 1755 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W TY1B-PR2P0C2J0 1756 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-PR3P0C2J1 1755 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W TY1B-JR1P47098 1755 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-ML2Q03434 1755 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W TY1B-ER1Q03612 1755 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-ML1Q04711 1755 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W TY1B-GR2Q12269 1755 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-OLQ12273 1755 aa9.15□□□□□ -0.94
UFD1YGR048W TY1B-PLQ12414 1755 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W HSP104P31539 908 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W RFC1P38630 861 aaKnown RBP9.15□□□□□ -0.94
UFD1YGR048W PRP31P49704 494 aaPredicted RBP9.15□□□□□ -0.94
UFD1YGR048W CWH41P53008 833 aa9.15□□□□□ -0.94
UFD1YGR048W ARP5P53946 755 aa9.15□□□□□ -0.94
UFD1YGR048W GIN4Q12263 1142 aa9.15□□□□□ -0.94
UFD1YGR048W PDR11P40550 1411 aa9.14□□□□□ -0.95
UFD1YGR048W PSK1P31374 1356 aa9.14□□□□□ -0.95
UFD1YGR048W YOR093CQ12275 1648 aa9.14□□□□□ -0.95
UFD1YGR048W PUP2P32379 260 aa9.14□□□□□ -0.95
UFD1YGR048W MNR2P35724 969 aa9.14□□□□□ -0.95
UFD1YGR048W ESL2P36168 1195 aa9.14□□□□□ -0.95
UFD1YGR048W ALD3P54114 506 aa9.14□□□□□ -0.95
UFD1YGR048W ORM2Q06144 216 aa9.14□□□□□ -0.95
UFD1YGR048W APC11Q12157 165 aa9.14□□□□□ -0.95
UFD1YGR048W DOP1Q03921 1698 aa9.13□□□□□ -0.95
UFD1YGR048W KRE5P22023 1365 aa9.13□□□□□ -0.95
UFD1YGR048W RAV1P47104 1357 aa9.13□□□□□ -0.95
UFD1YGR048W SEC14P24280 304 aaKnown RBP9.13□□□□□ -0.95
UFD1YGR048W RPC82P32349 654 aa9.13□□□□□ -0.95
UFD1YGR048W YMR124WP39523 943 aaKnown RBP9.13□□□□□ -0.95
UFD1YGR048W YGL081WP53156 320 aa9.13□□□□□ -0.95
UFD1YGR048W VPS20Q04272 221 aa9.13□□□□□ -0.95
UFD1YGR048W YPL225WQ08971 146 aaKnown RBP9.13□□□□□ -0.95
UFD1YGR048W TOP1P04786 769 aa9.12□□□□□ -0.95
UFD1YGR048W BIK1P11709 440 aa9.12□□□□□ -0.95
UFD1YGR048W SAP1P39955 897 aaKnown RBP9.12□□□□□ -0.95
UFD1YGR048W YGL082WP53155 381 aa9.12□□□□□ -0.95
UFD1YGR048W NDL1Q06568 189 aa9.12□□□□□ -0.95
UFD1YGR048W SIR4P11978 1358 aa9.12□□□□□ -0.95
UFD1YGR048W RAD50P12753 1312 aa9.11□□□□□ -0.95
UFD1YGR048W PRT1P06103 763 aaKnown RBP9.11□□□□□ -0.95
UFD1YGR048W PET123P17558 318 aa9.11□□□□□ -0.95
UFD1YGR048W TPD3P31383 635 aa9.11□□□□□ -0.95
UFD1YGR048W GCD11P32481 527 aaKnown RBP9.11□□□□□ -0.95
UFD1YGR048W OLA1P38219 394 aaKnown RBP9.11□□□□□ -0.95
UFD1YGR048W RTR1P40084 226 aaPredicted RBP9.11□□□□□ -0.95
UFD1YGR048W HOS4P40480 1083 aa9.11□□□□□ -0.95
UFD1YGR048W IAH1P41734 238 aa9.11□□□□□ -0.95
UFD1YGR048W GCR2Q01722 534 aa9.11□□□□□ -0.95
UFD1YGR048W GYL1Q04322 720 aa9.11□□□□□ -0.95
UFD1YGR048W PEX19Q07418 342 aa9.11□□□□□ -0.95
UFD1YGR048W PSO2P30620 661 aa9.1□□□□□ -0.95
UFD1YGR048W DPH5P32469 300 aaPredicted RBP9.1□□□□□ -0.95
UFD1YGR048W DID4P36108 232 aa9.1□□□□□ -0.95
UFD1YGR048W TLG1Q03322 224 aa9.1□□□□□ -0.95
UFD1YGR048W LYS2P07702 1392 aa9.1□□□□□ -0.95
UFD1YGR048W CDC25P04821 1589 aa9.09□□□□□ -0.95
UFD1YGR048W ARD1P07347 238 aaPredicted RBP9.09□□□□□ -0.95
UFD1YGR048W JSN1P47135 1091 aaKnown RBP RIP-Chip data9.09□□□□□ -0.95not detected
UFD1YGR048W DNM1P54861 757 aa9.09□□□□□ -0.95
UFD1YGR048W YLL054CQ12244 843 aa9.09□□□□□ -0.95
UFD1YGR048W MDS3P53094 1487 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-DR4O74302 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-HP0C2I4 478 aaKnown RBP9.08□□□□□ -0.96
UFD1YGR048W TY1A-AP0CX57 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-PR1P0CX58 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-ORP0CX59 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-PR2P0CX60 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-DR5P0CX65 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-ER2P0CX66 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-GR3P0CX67 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-LR1P0CX68 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-MR2P0CX69 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-JR2P47099 440 aa9.08□□□□□ -0.96
UFD1YGR048W VID30P53076 958 aa9.08□□□□□ -0.96
UFD1YGR048W RRP46P53256 223 aaPredicted RBP9.08□□□□□ -0.96
UFD1YGR048W HEF3P53978 1044 aaKnown RBP9.08□□□□□ -0.96
UFD1YGR048W TY1A-DR1Q03856 440 aa9.08□□□□□ -0.96
UFD1YGR048W SAS4Q04003 481 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-ML1Q04706 440 aaKnown RBP9.08□□□□□ -0.96
UFD1YGR048W COG4Q06096 861 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-BRQ12217 440 aa9.08□□□□□ -0.96
UFD1YGR048W SLP1Q12232 587 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-NL2Q12470 440 aa9.08□□□□□ -0.96
UFD1YGR048W TY1A-GR2Q12485 440 aa9.08□□□□□ -0.96
UFD1YGR048W YSP2Q06681 1438 aa9.07□□□□□ -0.96
UFD1YGR048W SES1P07284 462 aaKnown RBP9.07□□□□□ -0.96
UFD1YGR048W RNR2P09938 399 aaKnown RBP9.07□□□□□ -0.96
UFD1YGR048W KEX2P13134 814 aa9.07□□□□□ -0.96
UFD1YGR048W SDH2P21801 266 aa9.07□□□□□ -0.96
UFD1YGR048W SLD2P34252 453 aa9.07□□□□□ -0.96
UFD1YGR048W CTK3P46963 296 aaPredicted RBP9.07□□□□□ -0.96
UFD1YGR048W SSL2Q00578 843 aa9.07□□□□□ -0.96
UFD1YGR048W DRS2P39524 1355 aa9.07□□□□□ -0.96
UFD1YGR048W RAS1P01119 309 aa9.06□□□□□ -0.96
UFD1YGR048W SEC2P17065 759 aa9.06□□□□□ -0.96
UFD1YGR048W MRPS28P21771 286 aa9.06□□□□□ -0.96
Retrieved 100 of 5,963 RNA–protein pairs in 56.4 ms