RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C TDA6Q06466 467 aa6.09□□□□□ -1.43
RUB1YDR139C YBL113CQ7M4S9 792 aa6.09□□□□□ -1.43
RUB1YDR139C SSF1P38789 453 aaPredicted RBP6.08□□□□□ -1.44
RUB1YDR139C MTO1P53070 669 aa6.08□□□□□ -1.44
RUB1YDR139C ATG1P53104 897 aa6.08□□□□□ -1.44
RUB1YDR139C VMA3P25515 160 aa6.07□□□□□ -1.44
RUB1YDR139C KAP122P32767 1081 aa6.07□□□□□ -1.44
RUB1YDR139C GLO3P38682 493 aaKnown RBP6.07□□□□□ -1.44
RUB1YDR139C CEM1P39525 442 aa6.07□□□□□ -1.44
RUB1YDR139C ALD2P47771 506 aa6.07□□□□□ -1.44
RUB1YDR139C BOI1P38041 980 aaKnown RBP6.06□□□□□ -1.44
RUB1YDR139C DYS1P38791 387 aa6.06□□□□□ -1.44
RUB1YDR139C ERP5P38819 212 aa6.06□□□□□ -1.44
RUB1YDR139C QDR2P40474 542 aa6.06□□□□□ -1.44
RUB1YDR139C APC11Q12157 165 aa6.06□□□□□ -1.44
RUB1YDR139C RPP1AP05318 106 aaPredicted RBP6.05□□□□□ -1.44
RUB1YDR139C RGP1P16664 663 aa6.05□□□□□ -1.44
RUB1YDR139C LDH1P38139 375 aa6.05□□□□□ -1.44
RUB1YDR139C QDR1P40475 563 aa6.05□□□□□ -1.44
RUB1YDR139C YML020WQ03722 664 aa6.05□□□□□ -1.44
RUB1YDR139C STB3Q12427 513 aa6.05□□□□□ -1.44
RUB1YDR139C YPR053CQ6Q5F3 151 aa6.05□□□□□ -1.44
RUB1YDR139C TRL1P09880 827 aaKnown RBP6.04□□□□□ -1.44
RUB1YDR139C SBP1P10080 294 aaKnown RBP6.04□□□□□ -1.44
RUB1YDR139C DIT1P21623 536 aa6.04□□□□□ -1.44
RUB1YDR139C MRPL16P38064 232 aa6.04□□□□□ -1.44
RUB1YDR139C GRS1P38088 690 aaKnown RBP6.04□□□□□ -1.44
RUB1YDR139C SPR3P41901 512 aa6.04□□□□□ -1.44
RUB1YDR139C ACF4P47129 309 aa6.04□□□□□ -1.44
RUB1YDR139C YMR265CQ03508 461 aaKnown RBP6.04□□□□□ -1.44
RUB1YDR139C RPC31P17890 251 aa6.03□□□□□ -1.44
RUB1YDR139C SYT1Q06836 1226 aa6.03□□□□□ -1.44
RUB1YDR139C RPB10P22139 70 aa6.02□□□□□ -1.45
RUB1YDR139C SLD2P34252 453 aa6.02□□□□□ -1.45
RUB1YDR139C HXT8P40886 569 aa6.02□□□□□ -1.45
RUB1YDR139C SKP1P52286 194 aa6.02□□□□□ -1.45
RUB1YDR139C SUT1P53032 299 aaKnown RBP6.02□□□□□ -1.45
RUB1YDR139C ADE12P80210 433 aaKnown RBP6.02□□□□□ -1.45
RUB1YDR139C YCK2P23292 546 aaKnown RBP6.01□□□□□ -1.45
RUB1YDR139C STM1P39015 273 aaKnown RBP6.01□□□□□ -1.45
RUB1YDR139C SLN1P39928 1220 aaPredicted RBP6.01□□□□□ -1.45
RUB1YDR139C MDJ2P42834 146 aa6.01□□□□□ -1.45
RUB1YDR139C KRE33P53914 1056 aaKnown RBP6.01□□□□□ -1.45
RUB1YDR139C CUS1Q02554 436 aaPredicted RBP6.01□□□□□ -1.45
RUB1YDR139C NOP8Q08287 484 aaPredicted RBP6.01□□□□□ -1.45
RUB1YDR139C MCA1Q08601 432 aa6.01□□□□□ -1.45
RUB1YDR139C SMC1P32908 1225 aa6□□□□□ -1.45
RUB1YDR139C ISW1P38144 1129 aa6□□□□□ -1.45
RUB1YDR139C SKN7P38889 622 aa6□□□□□ -1.45
RUB1YDR139C FIR1P40020 876 aa6□□□□□ -1.45
RUB1YDR139C UFD2P54860 961 aa6□□□□□ -1.45
RUB1YDR139C YOR296WQ08748 1289 aa6□□□□□ -1.45
RUB1YDR139C YDR461C-AQ2V2P7 80 aa6□□□□□ -1.45
RUB1YDR139C GLT1Q12680 2145 aaKnown RBP5.99□□□□□ -1.45
RUB1YDR139C MSN1P22148 382 aa5.99□□□□□ -1.45
RUB1YDR139C GIP1P38229 639 aa5.99□□□□□ -1.45
RUB1YDR139C YBR287WP38355 427 aa5.99□□□□□ -1.45
RUB1YDR139C YMR187CQ03236 431 aa5.99□□□□□ -1.45
RUB1YDR139C FPS1P23900 669 aa5.98□□□□□ -1.45
RUB1YDR139C KTR2P33550 425 aa5.98□□□□□ -1.45
RUB1YDR139C NCL1P38205 684 aaKnown RBP5.98□□□□□ -1.45
RUB1YDR139C TRS120Q04183 1289 aa5.98□□□□□ -1.45
RUB1YDR139C BSD2P38356 321 aa5.97□□□□□ -1.45
RUB1YDR139C APM2P38700 605 aa5.97□□□□□ -1.45
RUB1YDR139C YHL050CP38721 697 aa5.97□□□□□ -1.45
RUB1YDR139C YHR219WP38900 624 aa5.97□□□□□ -1.45
RUB1YDR139C SEC20P28791 383 aa5.96□□□□□ -1.46
RUB1YDR139C RAD55P38953 406 aa5.96□□□□□ -1.46
RUB1YDR139C NTA1P40354 457 aa5.96□□□□□ -1.46
RUB1YDR139C HEH2Q03281 663 aa5.96□□□□□ -1.46
RUB1YDR139C NUT2Q06213 157 aa5.96□□□□□ -1.46
RUB1YDR139C NAB2P32505 525 aaKnown RBP RIP-Chip data5.95□□□□□ -1.46not detected
RUB1YDR139C YNR014WP53719 212 aa5.95□□□□□ -1.46
RUB1YDR139C SEN54Q02825 467 aaPredicted RBP5.95□□□□□ -1.46
RUB1YDR139C MSC6Q08818 692 aaKnown RBP5.95□□□□□ -1.46
RUB1YDR139C FRT1Q99332 602 aa5.95□□□□□ -1.46
RUB1YDR139C RGD2P43556 714 aa5.94□□□□□ -1.46
RUB1YDR139C ITC1P53125 1264 aa5.94□□□□□ -1.46
RUB1YDR139C YNR040WP53736 256 aa5.94□□□□□ -1.46
RUB1YDR139C IRS4P36115 615 aaKnown RBP5.93□□□□□ -1.46
RUB1YDR139C MSC7P38694 644 aa5.93□□□□□ -1.46
RUB1YDR139C PPX1P38698 397 aa5.93□□□□□ -1.46
RUB1YDR139C AIM46P38885 310 aa5.92□□□□□ -1.46
RUB1YDR139C PSY2P40164 858 aa5.92□□□□□ -1.46
RUB1YDR139C TY1A-DR2Q03964 440 aaKnown RBP5.92□□□□□ -1.46
RUB1YDR139C TIF6Q12522 245 aaKnown RBP5.92□□□□□ -1.46
RUB1YDR139C YER156CP40093 338 aaKnown RBP5.91□□□□□ -1.46
RUB1YDR139C YIL165CP40446 119 aa5.91□□□□□ -1.46
RUB1YDR139C YNL011CP53980 444 aa5.91□□□□□ -1.46
RUB1YDR139C MNL2Q12205 849 aa5.91□□□□□ -1.46
RUB1YDR139C IDI1P15496 288 aa5.9□□□□□ -1.46
RUB1YDR139C AMN1P38285 549 aaPredicted RBP5.9□□□□□ -1.46
RUB1YDR139C IPL1P38991 367 aa5.9□□□□□ -1.46
RUB1YDR139C RSC4Q02206 625 aa5.9□□□□□ -1.46
RUB1YDR139C EMG1Q06287 252 aaKnown RBP5.9□□□□□ -1.46
RUB1YDR139C RSC2Q06488 889 aa5.9□□□□□ -1.46
RUB1YDR139C YDR215CQ12240 137 aa5.9□□□□□ -1.46
RUB1YDR139C THI12P42883 340 aa5.89□□□□□ -1.47
RUB1YDR139C THI5P43534 340 aa5.89□□□□□ -1.47
RUB1YDR139C THI11P47183 340 aa5.89□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 43.6 ms