RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 PKH1Q03407 766 aa10.08□□□□□ -0.8
LSR1LSR1 RPN7Q06103 429 aaKnown RBP10.08□□□□□ -0.8
LSR1LSR1 NOP58Q12499 511 aaKnown RBP10.08□□□□□ -0.8
LSR1LSR1 PGA3Q12746 312 aaKnown RBP10.08□□□□□ -0.8
LSR1LSR1 FAS2P19097 1887 aaKnown RBP10.08□□□□□ -0.8
LSR1LSR1 TTI1P36097 1038 aa10.07□□□□□ -0.8
LSR1LSR1 MIC60P36112 540 aa10.07□□□□□ -0.8
LSR1LSR1 PEX14P53112 341 aa10.07□□□□□ -0.8
LSR1LSR1 SSL2Q00578 843 aa10.07□□□□□ -0.8
LSR1LSR1 ECM23Q02710 187 aa10.07□□□□□ -0.8
LSR1LSR1 SAC3P46674 1301 aa10.07□□□□□ -0.8
LSR1LSR1 COBP00163 385 aa10.06□□□□□ -0.8
LSR1LSR1 GRX1P25373 110 aaKnown RBP10.06□□□□□ -0.8
LSR1LSR1 LEO1P38439 464 aa10.06□□□□□ -0.8
LSR1LSR1 OSH3P38713 996 aaKnown RBP10.06□□□□□ -0.8
LSR1LSR1 CIC1P38779 376 aaKnown RBP10.06□□□□□ -0.8
LSR1LSR1 APP1P53933 587 aa10.06□□□□□ -0.8
LSR1LSR1 ELG1Q12050 791 aa10.06□□□□□ -0.8
LSR1LSR1 TPM1P17536 199 aaKnown RBP10.05□□□□□ -0.8
LSR1LSR1 OPI1P21957 404 aa10.05□□□□□ -0.8
LSR1LSR1 RDS1P25611 832 aa10.05□□□□□ -0.8
LSR1LSR1 YKR075CP36155 307 aa10.05□□□□□ -0.8
LSR1LSR1 MRPL10P36520 322 aa10.05□□□□□ -0.8
LSR1LSR1 VID28P40547 921 aa10.05□□□□□ -0.8
LSR1LSR1 YNL193WP53870 558 aa10.05□□□□□ -0.8
LSR1LSR1 FOX2Q02207 900 aaKnown RBP10.05□□□□□ -0.8
LSR1LSR1 PSK2Q08217 1101 aa10.05□□□□□ -0.8
LSR1LSR1 LAM4P38800 1345 aa10.05□□□□□ -0.8
LSR1LSR1 TAF13P11747 167 aa10.04□□□□□ -0.8
LSR1LSR1 PBY1P38254 753 aa10.04□□□□□ -0.8
LSR1LSR1 DOT5P40553 215 aa10.04□□□□□ -0.8
LSR1LSR1 ESC2Q06340 456 aa10.04□□□□□ -0.8
LSR1LSR1 DDP1Q99321 188 aaKnown RBP10.04□□□□□ -0.8
LSR1LSR1 ADR1P07248 1323 aa10.04□□□□□ -0.8
LSR1LSR1 SUP35P05453 685 aaKnown RBP10.03□□□□□ -0.8
LSR1LSR1 MATALPHA2P0CY08 210 aa10.03□□□□□ -0.8
LSR1LSR1 HMLALPHA2P0CY09 210 aa10.03□□□□□ -0.8
LSR1LSR1 ATE1P16639 503 aa10.03□□□□□ -0.8
LSR1LSR1 MAL33P38157 468 aa10.03□□□□□ -0.8
LSR1LSR1 YHL017WP38745 532 aa10.03□□□□□ -0.8
LSR1LSR1 BBC1P47068 1157 aa10.03□□□□□ -0.8
LSR1LSR1 PKH3Q03306 898 aaPredicted RBP10.03□□□□□ -0.8
LSR1LSR1 IMH1Q06704 911 aaKnown RBP10.03□□□□□ -0.8
LSR1LSR1 TRS33Q99394 268 aa10.03□□□□□ -0.8
LSR1LSR1 FBP26P32604 452 aa10.02□□□□□ -0.81
LSR1LSR1 ENT3P47160 408 aa10.02□□□□□ -0.81
LSR1LSR1 YGL082WP53155 381 aa10.02□□□□□ -0.81
LSR1LSR1 YLR407WQ06070 228 aa10.02□□□□□ -0.81
LSR1LSR1 ETT1Q08421 412 aaKnown RBP10.02□□□□□ -0.81
LSR1LSR1 YAH1Q12184 172 aaKnown RBP10.02□□□□□ -0.81
LSR1LSR1 SNU66Q12420 587 aaPredicted RBP10.02□□□□□ -0.81
LSR1LSR1 PEP3P27801 918 aa10.01□□□□□ -0.81
LSR1LSR1 ARP5P53946 755 aa10.01□□□□□ -0.81
LSR1LSR1 CYC8P14922 966 aa10□□□□□ -0.81
LSR1LSR1 YKE2P52553 114 aa10□□□□□ -0.81
LSR1LSR1 GPA1P08539 472 aa9.99□□□□□ -0.81
LSR1LSR1 YMR147WP40218 223 aaKnown RBP9.99□□□□□ -0.81
LSR1LSR1 RFC5P38251 354 aa9.98□□□□□ -0.81
LSR1LSR1 HAL5P38970 855 aaKnown RBP9.98□□□□□ -0.81
LSR1LSR1 STU2P46675 888 aa9.98□□□□□ -0.81
LSR1LSR1 YPT11P48559 417 aa9.98□□□□□ -0.81
LSR1LSR1 TIM50Q02776 476 aa9.98□□□□□ -0.81
LSR1LSR1 SGD1Q06132 899 aa9.98□□□□□ -0.81
LSR1LSR1 NYV1Q12255 253 aa9.98□□□□□ -0.81
LSR1LSR1 SER1P33330 395 aaKnown RBP9.97□□□□□ -0.81
LSR1LSR1 RFT1P38206 574 aaPredicted RBP9.97□□□□□ -0.81
LSR1LSR1 KAR5Q04746 504 aa9.97□□□□□ -0.81
LSR1LSR1 POM152P39685 1337 aa9.97□□□□□ -0.81
LSR1LSR1 SES1P07284 462 aaKnown RBP9.96□□□□□ -0.82
LSR1LSR1 IMP2'P32351 346 aa9.96□□□□□ -0.82
LSR1LSR1 SKI2P35207 1287 aaKnown RBP RIP-Chip data9.96□□□□□ -0.82not detected
LSR1LSR1 YER130CP39959 443 aa9.96□□□□□ -0.82
LSR1LSR1 GLO3P38682 493 aaKnown RBP9.95□□□□□ -0.82
LSR1LSR1 FYV10P40492 516 aa9.95□□□□□ -0.82
LSR1LSR1 TAH18Q12181 623 aa9.95□□□□□ -0.82
LSR1LSR1 SRP40P32583 406 aaPredicted RBP9.94□□□□□ -0.82
LSR1LSR1 MET1P36150 593 aa9.94□□□□□ -0.82
LSR1LSR1 TPM2P40414 161 aa9.94□□□□□ -0.82
LSR1LSR1 BUD6P41697 788 aa9.94□□□□□ -0.82
LSR1LSR1 SSF2Q12153 453 aaPredicted RBP9.94□□□□□ -0.82
LSR1LSR1 TFC8Q12308 588 aa9.94□□□□□ -0.82
LSR1LSR1 HAT1Q12341 374 aa9.94□□□□□ -0.82
LSR1LSR1 RPN1P38764 993 aaKnown RBP9.93□□□□□ -0.82
LSR1LSR1 EPL1P43572 832 aa9.93□□□□□ -0.82
LSR1LSR1 UBP10P53874 792 aaPredicted RBP9.93□□□□□ -0.82
LSR1LSR1 HOS3Q02959 697 aaKnown RBP9.93□□□□□ -0.82
LSR1LSR1 ESF1Q06344 628 aaKnown RBP9.93□□□□□ -0.82
LSR1LSR1 FIG2P25653 1609 aa9.93□□□□□ -0.82
LSR1LSR1 PIF1P07271 859 aa9.92□□□□□ -0.82
LSR1LSR1 PGI1P12709 554 aaKnown RBP9.92□□□□□ -0.82
LSR1LSR1 GSY2P27472 705 aa9.92□□□□□ -0.82
LSR1LSR1 MNR2P35724 969 aa9.92□□□□□ -0.82
LSR1LSR1 CRG1P38892 291 aaRIP-Chip data9.92□□□□□ -0.82not detected
LSR1LSR1 ALD3P54114 506 aa9.92□□□□□ -0.82
LSR1LSR1 PPM2Q08282 695 aa9.92□□□□□ -0.82
LSR1LSR1 GRE2Q12068 342 aaKnown RBP9.92□□□□□ -0.82
LSR1LSR1 RRI2Q12348 645 aa9.92□□□□□ -0.82
LSR1LSR1 HOP09932 586 aa9.91□□□□□ -0.82
LSR1LSR1 MCM4P30665 933 aaKnown RBP9.91□□□□□ -0.82
LSR1LSR1 TCD1P38756 429 aa9.91□□□□□ -0.82
Retrieved 100 of 5,963 RNA–protein pairs in 50.7 ms