RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RXRBP28702 533 aa17.62■□□□□ 0.41
UPF3B-204ENST00000619445 CDK12Q9NYV4 1490 aaPredicted RBP17.62■□□□□ 0.41
UPF3B-204ENST00000619445 NPHP3Q7Z494 1330 aa17.61■□□□□ 0.41
UPF3B-204ENST00000619445 SIRT1Q96EB6 747 aa17.6■□□□□ 0.41
UPF3B-204ENST00000619445 AFF2P51816 1311 aa17.6■□□□□ 0.41
UPF3B-204ENST00000619445 ORAI2Q96SN7 254 aa17.59■□□□□ 0.41
UPF3B-204ENST00000619445 MYOM2P54296 1465 aa17.59■□□□□ 0.41
UPF3B-204ENST00000619445 DDX17Q92841 729 aaKnown RBP17.58■□□□□ 0.4
UPF3B-204ENST00000619445 YTHDC2Q9H6S0 1430 aaKnown RBP17.57■□□□□ 0.4
UPF3B-204ENST00000619445 ESCO1Q5FWF5 840 aa17.57■□□□□ 0.4
UPF3B-204ENST00000619445 STK26Q9P289 416 aa17.57■□□□□ 0.4
UPF3B-204ENST00000619445 DHX57Q6P158 1386 aaKnown RBP17.57■□□□□ 0.4
UPF3B-204ENST00000619445 RAB3GAP2Q9H2M9 1393 aa17.57■□□□□ 0.4
UPF3B-204ENST00000619445 C8orf37Q96NL8 207 aa17.56■□□□□ 0.4
UPF3B-204ENST00000619445 C14orf93Q9H972 538 aaKnown RBP17.56■□□□□ 0.4
UPF3B-204ENST00000619445 NRXN1Q9ULB1 1477 aa17.56■□□□□ 0.4
UPF3B-204ENST00000619445 HRCP23327 699 aa17.55■□□□□ 0.4
UPF3B-204ENST00000619445 STAC3Q96MF2 364 aa17.55■□□□□ 0.4
UPF3B-204ENST00000619445 COL22A1Q8NFW1 1626 aaPredicted RBP17.55■□□□□ 0.4
UPF3B-204ENST00000619445 NGLY1Q96IV0 654 aa17.54■□□□□ 0.4
UPF3B-204ENST00000619445 RBM6P78332 1123 aaKnown RBP17.53■□□□□ 0.4
UPF3B-204ENST00000619445 TMEM132EQ6IEE7 984 aa17.53■□□□□ 0.4
UPF3B-204ENST00000619445 WAPLQ7Z5K2 1190 aa17.53■□□□□ 0.4
UPF3B-204ENST00000619445 KIF1AQ12756 1690 aa17.53■□□□□ 0.4
UPF3B-204ENST00000619445 QTRT2Q9H974 415 aaKnown RBP17.53■□□□□ 0.4
UPF3B-204ENST00000619445 FMN2Q9NZ56 1722 aa17.52■□□□□ 0.39
UPF3B-204ENST00000619445 PXDNQ92626 1479 aa17.51■□□□□ 0.39
UPF3B-204ENST00000619445 ADAMTS2O95450 1211 aa17.51■□□□□ 0.39
UPF3B-204ENST00000619445 FOXO3O43524 673 aa17.5■□□□□ 0.39
UPF3B-204ENST00000619445 DLC1Q96QB1 1528 aa17.49■□□□□ 0.39
UPF3B-204ENST00000619445 FNBP4Q8N3X1 1017 aaPredicted RBP17.49■□□□□ 0.39
UPF3B-204ENST00000619445 TRPC5Q9UL62 973 aaPredicted RBP17.49■□□□□ 0.39
UPF3B-204ENST00000619445 PLEKHH1Q9ULM0 1364 aa17.48■□□□□ 0.39
UPF3B-204ENST00000619445 CFAP70Q5T0N1 1121 aa17.48■□□□□ 0.39
UPF3B-204ENST00000619445 UPF1Q92900 1129 aaKnown RBP eCLIP17.48■□□□□ 0.39
UPF3B-204ENST00000619445 USP21Q9UK80 565 aa17.47■□□□□ 0.39
UPF3B-204ENST00000619445 MARF1Q9Y4F3 1742 aaKnown RBP17.46■□□□□ 0.39
UPF3B-204ENST00000619445 PSME1Q06323 249 aa17.46■□□□□ 0.39
UPF3B-204ENST00000619445 NUTM2FA1L443 756 aa17.45■□□□□ 0.38
UPF3B-204ENST00000619445 POGKQ9P215 609 aa17.45■□□□□ 0.38
UPF3B-204ENST00000619445 EIF3AQ14152 1382 aaKnown RBP17.45■□□□□ 0.38
UPF3B-204ENST00000619445 RGS12O14924 1447 aa17.44■□□□□ 0.38
UPF3B-204ENST00000619445 ANKARQ7Z5J8 1434 aa17.44■□□□□ 0.38
UPF3B-204ENST00000619445 SPATA31A3Q5VYP0 1347 aa17.44■□□□□ 0.38
UPF3B-204ENST00000619445 PRAM1Q96QH2 718 aa17.43■□□□□ 0.38
UPF3B-204ENST00000619445 PHF8Q9UPP1 1060 aa17.43■□□□□ 0.38
UPF3B-204ENST00000619445 ADGRB2O60241 1585 aa17.42■□□□□ 0.38
UPF3B-204ENST00000619445 ADGRB1O14514 1584 aa17.42■□□□□ 0.38
UPF3B-204ENST00000619445 ATRNO75882 1429 aa17.41■□□□□ 0.38
UPF3B-204ENST00000619445 XPCQ01831 940 aaPredicted RBP17.41■□□□□ 0.38
UPF3B-204ENST00000619445 KRT28Q7Z3Y7 464 aa17.41■□□□□ 0.38
UPF3B-204ENST00000619445 DCAF11Q8TEB1 546 aa17.4■□□□□ 0.38
UPF3B-204ENST00000619445 RGPD8O14715 1765 aaPredicted RBP17.4■□□□□ 0.38
UPF3B-204ENST00000619445 SBNO1A3KN83 1393 aa17.4■□□□□ 0.38
UPF3B-204ENST00000619445 ARHGEF10O15013 1369 aa17.4■□□□□ 0.38
UPF3B-204ENST00000619445 ATAD2Q6PL18 1390 aa17.4■□□□□ 0.38
UPF3B-204ENST00000619445 TNS3Q68CZ2 1445 aa17.4■□□□□ 0.38
UPF3B-204ENST00000619445 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.39■□□□□ 0.38
UPF3B-204ENST00000619445 BCL9LQ86UU0 1499 aa17.38■□□□□ 0.37
UPF3B-204ENST00000619445 HAP1P54257 671 aaPredicted RBP17.38■□□□□ 0.37
UPF3B-204ENST00000619445 SAFB2Q14151 953 aaKnown RBP eCLIP17.38■□□□□ 0.37
UPF3B-204ENST00000619445 KDM2AQ9Y2K7 1162 aa17.38■□□□□ 0.37
UPF3B-204ENST00000619445 TRAK1Q9UPV9 953 aa17.37■□□□□ 0.37
UPF3B-204ENST00000619445 USP32Q8NFA0 1604 aa17.36■□□□□ 0.37
UPF3B-204ENST00000619445 GPRASP1Q5JY77 1395 aa17.35■□□□□ 0.37
UPF3B-204ENST00000619445 UNC5CLQ8IV45 518 aa17.35■□□□□ 0.37
UPF3B-204ENST00000619445 SLIT2O94813 1529 aa17.34■□□□□ 0.37
UPF3B-204ENST00000619445 TULP4Q9NRJ4 1543 aa17.34■□□□□ 0.37
UPF3B-204ENST00000619445 GJD4Q96KN9 370 aaPredicted RBP17.34■□□□□ 0.37
UPF3B-204ENST00000619445 CCDC125Q86Z20 511 aa17.33■□□□□ 0.36
UPF3B-204ENST00000619445 NWD2Q9ULI1 1742 aa17.33■□□□□ 0.36
UPF3B-204ENST00000619445 WASLO00401 505 aaPredicted RBP17.32■□□□□ 0.36
UPF3B-204ENST00000619445 KIAA1210Q9ULL0 1709 aa17.32■□□□□ 0.36
UPF3B-204ENST00000619445 ITSN1Q15811 1721 aa17.31■□□□□ 0.36
UPF3B-204ENST00000619445 LMOD2Q6P5Q4 547 aa17.31■□□□□ 0.36
UPF3B-204ENST00000619445 MINK1Q8N4C8 1332 aaPredicted RBP17.31■□□□□ 0.36
UPF3B-204ENST00000619445 PMFBP1Q8TBY8 1022 aa17.3■□□□□ 0.36
UPF3B-204ENST00000619445 ARHGEF28Q8N1W1 1705 aaKnown RBP17.3■□□□□ 0.36
UPF3B-204ENST00000619445 HIRIP3Q9BW71 556 aaPredicted RBP17.29■□□□□ 0.36
UPF3B-204ENST00000619445 ABCA3Q99758 1704 aa17.29■□□□□ 0.36
UPF3B-204ENST00000619445 RALGAPBQ86X10 1494 aa17.28■□□□□ 0.36
UPF3B-204ENST00000619445 TRPM3Q9HCF6 1732 aaPredicted RBP17.28■□□□□ 0.36
UPF3B-204ENST00000619445 VPS72Q15906 364 aa17.28■□□□□ 0.36
UPF3B-204ENST00000619445 NGDNQ8NEJ9 315 aaKnown RBP17.28■□□□□ 0.36
UPF3B-204ENST00000619445 PLCH1Q4KWH8 1693 aa17.26■□□□□ 0.35
UPF3B-204ENST00000619445 ALS2Q96Q42 1657 aa17.26■□□□□ 0.35
UPF3B-204ENST00000619445 GLI3P10071 1580 aa17.25■□□□□ 0.35
UPF3B-204ENST00000619445 PRR36Q9H6K5 1346 aa17.25■□□□□ 0.35
UPF3B-204ENST00000619445 CABLES1Q8TDN4 633 aa17.25■□□□□ 0.35
UPF3B-204ENST00000619445 ATP7BP35670 1465 aa17.23■□□□□ 0.35
UPF3B-204ENST00000619445 NUDT16Q96DE0 195 aaKnown RBP17.23■□□□□ 0.35
UPF3B-204ENST00000619445 COL14A1Q05707 1796 aaKnown RBP17.22■□□□□ 0.35
UPF3B-204ENST00000619445 ONECUT3O60422 494 aaPredicted RBP17.22■□□□□ 0.35
UPF3B-204ENST00000619445 CCDC9Q9Y3X0 531 aaKnown RBP17.22■□□□□ 0.35
UPF3B-204ENST00000619445 EP400Q96L91 3159 aa17.22■□□□□ 0.35
UPF3B-204ENST00000619445 CCDC61Q9Y6R9 512 aa17.21■□□□□ 0.35
UPF3B-204ENST00000619445 FAM83GA6ND36 823 aa17.2■□□□□ 0.34
UPF3B-204ENST00000619445 PAK3O75914 559 aaPredicted RBP17.2■□□□□ 0.34
UPF3B-204ENST00000619445 CDK19Q9BWU1 502 aa17.2■□□□□ 0.34
UPF3B-204ENST00000619445 SEPT12Q8IYM1 358 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 123.7 ms