RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 MSS51Q4VC12 460 aa10.16□□□□□ -0.78
SMCHD1-213ENST00000609587 BRICD5Q6PL45 260 aa10.16□□□□□ -0.78
SMCHD1-213ENST00000609587 RNF19BQ6ZMZ0 732 aa10.16□□□□□ -0.78
SMCHD1-213ENST00000609587 DAXXQ9UER7 740 aaPredicted RBP10.16□□□□□ -0.78
SMCHD1-213ENST00000609587 DDX11L8A8MPP1 907 aa10.15□□□□□ -0.78
SMCHD1-213ENST00000609587 FECHP22830 423 aa10.15□□□□□ -0.78
SMCHD1-213ENST00000609587 TRIM47Q96LD4 638 aa10.15□□□□□ -0.78
SMCHD1-213ENST00000609587 SALL2Q9Y467 1007 aaPredicted RBP10.15□□□□□ -0.78
SMCHD1-213ENST00000609587 TERTO14746 1132 aaKnown RBP10.14□□□□□ -0.79
SMCHD1-213ENST00000609587 TRIM32Q13049 653 aa10.14□□□□□ -0.79
SMCHD1-213ENST00000609587 SNIP1Q8TAD8 396 aaKnown RBP10.14□□□□□ -0.79
SMCHD1-213ENST00000609587 J3QL48 77 aa10.13□□□□□ -0.79
SMCHD1-213ENST00000609587 GPR37O15354 613 aa10.13□□□□□ -0.79
SMCHD1-213ENST00000609587 GCGRP47871 477 aa10.13□□□□□ -0.79
SMCHD1-213ENST00000609587 BCANQ96GW7 911 aa10.13□□□□□ -0.79
SMCHD1-213ENST00000609587 ZBTB24O43167 697 aaPredicted RBP10.12□□□□□ -0.79
SMCHD1-213ENST00000609587 MRGPRX2Q96LB1 330 aa10.12□□□□□ -0.79
SMCHD1-213ENST00000609587 PHOX2BQ99453 314 aa10.1□□□□□ -0.79
SMCHD1-213ENST00000609587 RBM26Q5T8P6 1007 aaKnown RBP10.09□□□□□ -0.79
SMCHD1-213ENST00000609587 HPS1Q92902 700 aa10.09□□□□□ -0.79
SMCHD1-213ENST00000609587 SENP2Q9HC62 589 aa10.09□□□□□ -0.79
SMCHD1-213ENST00000609587 GNPATO15228 680 aa10.08□□□□□ -0.8
SMCHD1-213ENST00000609587 MMP16P51512 607 aa10.08□□□□□ -0.8
SMCHD1-213ENST00000609587 SULF1Q8IWU6 871 aa10.07□□□□□ -0.8
SMCHD1-213ENST00000609587 DXOO77932 396 aaKnown RBP10.03□□□□□ -0.8
SMCHD1-213ENST00000609587 KIFC2Q96AC6 838 aa10.03□□□□□ -0.8
SMCHD1-213ENST00000609587 REPIN1Q9BWE0 567 aaKnown RBP10.03□□□□□ -0.8
SMCHD1-213ENST00000609587 TESPA1A2RU30 521 aaPredicted RBP10.02□□□□□ -0.81
SMCHD1-213ENST00000609587 SKOR1P84550 965 aa10.02□□□□□ -0.81
SMCHD1-213ENST00000609587 LORP23490 312 aaPredicted RBP10.01□□□□□ -0.81
SMCHD1-213ENST00000609587 Q3C1V9 767 aa10.01□□□□□ -0.81
SMCHD1-213ENST00000609587 GRIPAP1Q4V328 841 aa9.99□□□□□ -0.81
SMCHD1-213ENST00000609587 RC3H1Q5TC82 1133 aaKnown RBP9.99□□□□□ -0.81
SMCHD1-213ENST00000609587 GMPRP36959 345 aa9.98□□□□□ -0.81
SMCHD1-213ENST00000609587 USB1Q9BQ65 265 aaKnown RBP9.98□□□□□ -0.81
SMCHD1-213ENST00000609587 BMP1P13497 986 aa9.97□□□□□ -0.81
SMCHD1-213ENST00000609587 WNT7BP56706 349 aa9.97□□□□□ -0.81
SMCHD1-213ENST00000609587 HLA-CQ95604 372 aa9.97□□□□□ -0.81
SMCHD1-213ENST00000609587 LOC100996750A0A140TA64 210 aa9.96□□□□□ -0.82
SMCHD1-213ENST00000609587 CD46P15529 392 aa9.96□□□□□ -0.82
SMCHD1-213ENST00000609587 KRTAP4-6Q9BYQ5 205 aa9.96□□□□□ -0.82
SMCHD1-213ENST00000609587 SMYD5Q6GMV2 418 aa9.95□□□□□ -0.82
SMCHD1-213ENST00000609587 TRIM46Q7Z4K8 759 aa9.95□□□□□ -0.82
SMCHD1-213ENST00000609587 NXF1Q9UBU9 619 aaKnown RBP9.95□□□□□ -0.82
SMCHD1-213ENST00000609587 ALDH1A1P00352 501 aa9.94□□□□□ -0.82
SMCHD1-213ENST00000609587 CCDC24Q8N4L8 307 aa9.94□□□□□ -0.82
SMCHD1-213ENST00000609587 SLC16A10Q8TF71 515 aa9.94□□□□□ -0.82
SMCHD1-213ENST00000609587 FAM181BA6NEQ2 426 aa9.92□□□□□ -0.82
SMCHD1-213ENST00000609587 VEGFBP49765 207 aa9.92□□□□□ -0.82
SMCHD1-213ENST00000609587 ZSCAN1Q8NBB4 408 aa9.92□□□□□ -0.82
SMCHD1-213ENST00000609587 ERBB4Q15303 1308 aa9.91□□□□□ -0.82
SMCHD1-213ENST00000609587 KDM4AO75164 1064 aa9.91□□□□□ -0.82
SMCHD1-213ENST00000609587 H3BM21 787 aa9.9□□□□□ -0.82
SMCHD1-213ENST00000609587 IRF7Q92985 503 aa9.9□□□□□ -0.82
SMCHD1-213ENST00000609587 NPAS3Q8IXF0 933 aa9.89□□□□□ -0.83
SMCHD1-213ENST00000609587 SIAH2O43255 324 aa9.88□□□□□ -0.83
SMCHD1-213ENST00000609587 HOXA2O43364 376 aa9.88□□□□□ -0.83
SMCHD1-213ENST00000609587 JUNDP17535 347 aa9.87□□□□□ -0.83
SMCHD1-213ENST00000609587 GUCA2AQ02747 115 aa9.87□□□□□ -0.83
SMCHD1-213ENST00000609587 GPIHBP1Q8IV16 184 aa9.87□□□□□ -0.83
SMCHD1-213ENST00000609587 TULP1O00294 542 aaPredicted RBP9.86□□□□□ -0.83
SMCHD1-213ENST00000609587 CAPN5O15484 640 aaPredicted RBP9.86□□□□□ -0.83
SMCHD1-213ENST00000609587 USP46P62068 366 aa9.85□□□□□ -0.83
SMCHD1-213ENST00000609587 PTCRAQ6ISU1 281 aaPredicted RBP9.85□□□□□ -0.83
SMCHD1-213ENST00000609587 EHBP1Q8NDI1 1231 aa9.85□□□□□ -0.83
SMCHD1-213ENST00000609587 SYMPKQ92797 1274 aaKnown RBP9.84□□□□□ -0.83
SMCHD1-213ENST00000609587 WASF2Q9Y6W5 498 aa9.83□□□□□ -0.84
SMCHD1-213ENST00000609587 NUDT12Q9BQG2 462 aa9.82□□□□□ -0.84
SMCHD1-213ENST00000609587 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.81□□□□□ -0.846e-6■□□□□ 10
SMCHD1-213ENST00000609587 ZFP42Q96MM3 310 aa9.81□□□□□ -0.84
SMCHD1-213ENST00000609587 MDM2Q00987 491 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-213ENST00000609587 MAP2K5Q13163 448 aa9.8□□□□□ -0.84
SMCHD1-213ENST00000609587 TLL2Q9Y6L7 1015 aa9.8□□□□□ -0.84
SMCHD1-213ENST00000609587 PRKCSHP14314 528 aaPredicted RBP9.79□□□□□ -0.84
SMCHD1-213ENST00000609587 SH3BP2P78314 561 aa9.79□□□□□ -0.84
SMCHD1-213ENST00000609587 TPRNQ4KMQ1 711 aa9.79□□□□□ -0.84
SMCHD1-213ENST00000609587 RETREG3Q86VR2 466 aa9.78□□□□□ -0.84
SMCHD1-213ENST00000609587 VSIG8P0DPA2 414 aa9.76□□□□□ -0.85
SMCHD1-213ENST00000609587 CCNYL3P0C7X3 344 aa9.74□□□□□ -0.85
SMCHD1-213ENST00000609587 LINC01559Q495D7 138 aa9.74□□□□□ -0.85
SMCHD1-213ENST00000609587 SOBPA7XYQ1 873 aa9.73□□□□□ -0.85
SMCHD1-213ENST00000609587 MS4A1P11836 297 aa9.73□□□□□ -0.85
SMCHD1-213ENST00000609587 MRPL14Q6P1L8 145 aaKnown RBP9.73□□□□□ -0.85
SMCHD1-213ENST00000609587 PCDHGC3Q9UN70 934 aa9.73□□□□□ -0.85
SMCHD1-213ENST00000609587 IRF6O14896 467 aa9.72□□□□□ -0.85
SMCHD1-213ENST00000609587 NNTQ13423 1086 aa9.72□□□□□ -0.85
SMCHD1-213ENST00000609587 SUZ12Q15022 739 aaKnown RBP9.72□□□□□ -0.85
SMCHD1-213ENST00000609587 PURBQ96QR8 312 aaKnown RBP9.72□□□□□ -0.85
SMCHD1-213ENST00000609587 UNC93B1Q9H1C4 597 aa9.72□□□□□ -0.85
SMCHD1-213ENST00000609587 TIMP2P16035 220 aa9.71□□□□□ -0.86
SMCHD1-213ENST00000609587 FAM217BQ9NTX9 383 aaPredicted RBP9.71□□□□□ -0.86
SMCHD1-213ENST00000609587 GSK3AP49840 483 aa9.7□□□□□ -0.86
SMCHD1-213ENST00000609587 PTPRNQ16849 979 aa9.7□□□□□ -0.86
SMCHD1-213ENST00000609587 ZNF511Q8NB15 262 aa9.69□□□□□ -0.86
SMCHD1-213ENST00000609587 BAP1Q92560 729 aa9.69□□□□□ -0.86
SMCHD1-213ENST00000609587 CCDC102AQ96A19 550 aa9.69□□□□□ -0.86
SMCHD1-213ENST00000609587 C6orf229H3BNL8 230 aa9.68□□□□□ -0.86
SMCHD1-213ENST00000609587 ADH1CP00326 375 aa9.68□□□□□ -0.86
SMCHD1-213ENST00000609587 FDX1P10109 184 aa9.68□□□□□ -0.86
SMCHD1-213ENST00000609587 KLF16Q9BXK1 252 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms