RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 PTPRUQ92729 1446 aa24.66■■□□□ 1.54
VRK3-225ENST00000601912 CCER2I3L3R5 266 aa24.66■■□□□ 1.54
VRK3-225ENST00000601912 SRPK2P78362 688 aaKnown RBP24.66■■□□□ 1.54
VRK3-225ENST00000601912 PRKRIP1Q9H875 184 aaPredicted RBP24.66■■□□□ 1.54
VRK3-225ENST00000601912 ROBO2Q9HCK4 1378 aa24.65■■□□□ 1.54
VRK3-225ENST00000601912 NCKAP5LQ9HCH0 1330 aa24.64■■□□□ 1.54
VRK3-225ENST00000601912 PER1O15534 1290 aaPredicted RBP24.63■■□□□ 1.53
VRK3-225ENST00000601912 CABP2Q9NPB3 220 aa24.63■■□□□ 1.53
VRK3-225ENST00000601912 MYOM1P52179 1685 aa24.63■■□□□ 1.53
VRK3-225ENST00000601912 TMC1Q8TDI8 760 aa24.62■■□□□ 1.53
VRK3-225ENST00000601912 CDK19Q9BWU1 502 aa24.62■■□□□ 1.53
VRK3-225ENST00000601912 PTCH1Q13635 1447 aa24.61■■□□□ 1.53
VRK3-225ENST00000601912 ATAD2Q6PL18 1390 aa24.61■■□□□ 1.53
VRK3-225ENST00000601912 KNSTRNQ9Y448 316 aa24.6■■□□□ 1.53
VRK3-225ENST00000601912 NINLQ9Y2I6 1382 aa24.59■■□□□ 1.53
VRK3-225ENST00000601912 KTN1Q86UP2 1357 aaKnown RBP24.58■■□□□ 1.52
VRK3-225ENST00000601912 WASLO00401 505 aaPredicted RBP24.57■■□□□ 1.52
VRK3-225ENST00000601912 SLC12A5Q9H2X9 1139 aa24.57■■□□□ 1.52
VRK3-225ENST00000601912 XRN1Q8IZH2 1706 aaKnown RBP24.57■■□□□ 1.52
VRK3-225ENST00000601912 KCNA6P17658 529 aa24.56■■□□□ 1.52
VRK3-225ENST00000601912 CNGB1Q14028 1251 aaPredicted RBP24.56■■□□□ 1.52
VRK3-225ENST00000601912 HSPA2P54652 639 aa24.55■■□□□ 1.52
VRK3-225ENST00000601912 RALBP1Q15311 655 aa24.55■■□□□ 1.52
VRK3-225ENST00000601912 LMTK3Q96Q04 1460 aa24.54■■□□□ 1.52
VRK3-225ENST00000601912 CHD2O14647 1828 aaKnown RBP24.54■■□□□ 1.52
VRK3-225ENST00000601912 ADGRB2O60241 1585 aa24.51■■□□□ 1.51
VRK3-225ENST00000601912 ANKRD36BQ8N2N9 1353 aa24.5■■□□□ 1.51
VRK3-225ENST00000601912 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.5■■□□□ 1.51
VRK3-225ENST00000601912 CC2D1BQ5T0F9 858 aaKnown RBP24.5■■□□□ 1.51
VRK3-225ENST00000601912 CARD14Q9BXL6 1004 aa24.49■■□□□ 1.51
VRK3-225ENST00000601912 TERF2IPQ9NYB0 399 aa24.49■■□□□ 1.51
VRK3-225ENST00000601912 AMER1Q5JTC6 1135 aaPredicted RBP24.48■■□□□ 1.51
VRK3-225ENST00000601912 NPC1L1Q9UHC9 1359 aa24.48■■□□□ 1.51
VRK3-225ENST00000601912 PARD3Q8TEW0 1356 aa24.47■■□□□ 1.51
VRK3-225ENST00000601912 NUDT16Q96DE0 195 aaKnown RBP24.46■■□□□ 1.51
VRK3-225ENST00000601912 CABP1Q9NZU7 370 aa24.46■■□□□ 1.51
VRK3-225ENST00000601912 MYBBP1AQ9BQG0 1328 aaKnown RBP24.45■■□□□ 1.5
VRK3-225ENST00000601912 HDGFL2Q7Z4V5 671 aaPredicted RBP24.45■■□□□ 1.5
VRK3-225ENST00000601912 CCDC61Q9Y6R9 512 aa24.45■■□□□ 1.5
VRK3-225ENST00000601912 NSD3Q9BZ95 1437 aa24.44■■□□□ 1.5
VRK3-225ENST00000601912 MRS2Q9HD23 443 aa24.43■■□□□ 1.5
VRK3-225ENST00000601912 A0A1W2PP64 1363 aa24.42■■□□□ 1.5
VRK3-225ENST00000601912 NWD1Q149M9 1564 aa24.42■■□□□ 1.5
VRK3-225ENST00000601912 YTHDC1Q96MU7 727 aaKnown RBP24.42■■□□□ 1.5
VRK3-225ENST00000601912 CGNL1Q0VF96 1302 aa24.41■■□□□ 1.5
VRK3-225ENST00000601912 ATP7BP35670 1465 aa24.41■■□□□ 1.5
VRK3-225ENST00000601912 PPIP5K1Q6PFW1 1433 aa24.41■■□□□ 1.5
VRK3-225ENST00000601912 NLRP13Q86W25 1043 aa24.38■■□□□ 1.49
VRK3-225ENST00000601912 CD163L1Q9NR16 1453 aa24.38■■□□□ 1.49
VRK3-225ENST00000601912 PRR36Q9H6K5 1346 aa24.38■■□□□ 1.49
VRK3-225ENST00000601912 USP32Q8NFA0 1604 aa24.37■■□□□ 1.49
VRK3-225ENST00000601912 NKTRP30414 1462 aaKnown RBP24.37■■□□□ 1.49
VRK3-225ENST00000601912 CCDC184Q52MB2 194 aa24.37■■□□□ 1.49
VRK3-225ENST00000601912 PROSER2Q86WR7 435 aaPredicted RBP24.37■■□□□ 1.49
VRK3-225ENST00000601912 STRCQ7RTU9 1775 aa24.36■■□□□ 1.49
VRK3-225ENST00000601912 BRD4O60885 1362 aaPredicted RBP24.36■■□□□ 1.49
VRK3-225ENST00000601912 C14orf37Q86TY3 774 aa24.36■■□□□ 1.49
VRK3-225ENST00000601912 NSD2O96028 1365 aa24.35■■□□□ 1.49
VRK3-225ENST00000601912 NUTM2FA1L443 756 aa24.35■■□□□ 1.49
VRK3-225ENST00000601912 ADGRL3Q9HAR2 1447 aa24.34■■□□□ 1.49
VRK3-225ENST00000601912 ZNF692Q9BU19 519 aaPredicted RBP24.34■■□□□ 1.49
VRK3-225ENST00000601912 PLEKHG3A1L390 1219 aa24.33■■□□□ 1.49
VRK3-225ENST00000601912 CPSF1Q10570 1443 aaKnown RBP24.33■■□□□ 1.49
VRK3-225ENST00000601912 ANKARQ7Z5J8 1434 aa24.33■■□□□ 1.49
VRK3-225ENST00000601912 RBM33Q96EV2 1170 aaKnown RBP24.33■■□□□ 1.49
VRK3-225ENST00000601912 CDC42BPGQ6DT37 1551 aa24.32■■□□□ 1.48
VRK3-225ENST00000601912 NALCNQ8IZF0 1738 aa24.32■■□□□ 1.48
VRK3-225ENST00000601912 MORC1Q86VD1 984 aa24.31■■□□□ 1.48
VRK3-225ENST00000601912 TOPAZ1Q8N9V7 1692 aa24.3■■□□□ 1.48
VRK3-225ENST00000601912 PPP2R1AP30153 589 aa24.3■■□□□ 1.48
VRK3-225ENST00000601912 DMRT2Q9Y5R5 561 aa24.3■■□□□ 1.48
VRK3-225ENST00000601912 ITSN1Q15811 1721 aa24.29■■□□□ 1.48
VRK3-225ENST00000601912 FMN2Q9NZ56 1722 aa24.29■■□□□ 1.48
VRK3-225ENST00000601912 EDC4Q6P2E9 1401 aaKnown RBP24.28■■□□□ 1.48
VRK3-225ENST00000601912 FAM9BQ8IZU0 186 aa24.27■■□□□ 1.48
VRK3-225ENST00000601912 ACEP12821 1306 aa24.27■■□□□ 1.48
VRK3-225ENST00000601912 NCOA3Q9Y6Q9 1424 aa24.26■■□□□ 1.47
VRK3-225ENST00000601912 CENPBP07199 599 aaPredicted RBP24.26■■□□□ 1.47
VRK3-225ENST00000601912 FYB1O15117 783 aa24.25■■□□□ 1.47
VRK3-225ENST00000601912 C19orf44Q9H6X5 657 aa24.25■■□□□ 1.47
VRK3-225ENST00000601912 AKAP12Q02952 1782 aa24.24■■□□□ 1.47
VRK3-225ENST00000601912 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.24■■□□□ 1.47
VRK3-225ENST00000601912 NGDNQ8NEJ9 315 aaKnown RBP24.24■■□□□ 1.47
VRK3-225ENST00000601912 STRCP1A6NGW2 1772 aa24.23■■□□□ 1.47
VRK3-225ENST00000601912 TMEM94Q12767 1356 aa24.23■■□□□ 1.47
VRK3-225ENST00000601912 PNISRQ8TF01 805 aaKnown RBP24.23■■□□□ 1.47
VRK3-225ENST00000601912 GGNBP2Q9H3C7 697 aa24.23■■□□□ 1.47
VRK3-225ENST00000601912 PMFBP1Q8TBY8 1022 aa24.22■■□□□ 1.47
VRK3-225ENST00000601912 MON2Q7Z3U7 1717 aa24.22■■□□□ 1.47
VRK3-225ENST00000601912 RGPD8O14715 1765 aaPredicted RBP24.22■■□□□ 1.47
VRK3-225ENST00000601912 POLR3AO14802 1390 aaPredicted RBP24.21■■□□□ 1.47
VRK3-225ENST00000601912 USP6P35125 1406 aa24.19■■□□□ 1.46
VRK3-225ENST00000601912 KIF20BQ96Q89 1820 aa24.19■■□□□ 1.46
VRK3-225ENST00000601912 TNNT2P45379 298 aaPredicted RBP24.19■■□□□ 1.46
VRK3-225ENST00000601912 ATF3P18847 181 aa24.18■■□□□ 1.46
VRK3-225ENST00000601912 ANKRD26Q9UPS8 1709 aa24.18■■□□□ 1.46
VRK3-225ENST00000601912 PHF8Q9UPP1 1060 aa24.18■■□□□ 1.46
VRK3-225ENST00000601912 ZNF335Q9H4Z2 1342 aaPredicted RBP24.17■■□□□ 1.46
VRK3-225ENST00000601912 DCCP43146 1447 aa24.16■■□□□ 1.46
VRK3-225ENST00000601912 TTC21BQ7Z4L5 1316 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms