RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ERICH6BQ5W0A0 696 aa19.29■□□□□ 0.68
VRK3-217ENST00000599538 PUS7Q96PZ0 661 aaKnown RBP19.29■□□□□ 0.68
VRK3-217ENST00000599538 POGKQ9P215 609 aa19.29■□□□□ 0.68
VRK3-217ENST00000599538 PPP4R2Q9NY27 417 aa19.28■□□□□ 0.68
VRK3-217ENST00000599538 SRPK2P78362 688 aaKnown RBP19.28■□□□□ 0.68
VRK3-217ENST00000599538 ANKRD36BQ8N2N9 1353 aa19.27■□□□□ 0.67
VRK3-217ENST00000599538 PLEKHH1Q9ULM0 1364 aa19.27■□□□□ 0.67
VRK3-217ENST00000599538 PDE3BQ13370 1112 aa19.27■□□□□ 0.67
VRK3-217ENST00000599538 MORC1Q86VD1 984 aa19.27■□□□□ 0.67
VRK3-217ENST00000599538 CCDC146Q8IYE0 955 aa19.27■□□□□ 0.67
VRK3-217ENST00000599538 SETD1AO15047 1707 aaKnown RBP19.26■□□□□ 0.67
VRK3-217ENST00000599538 B4GALNT3Q6L9W6 998 aa19.26■□□□□ 0.67
VRK3-217ENST00000599538 WAPLQ7Z5K2 1190 aa19.26■□□□□ 0.67
VRK3-217ENST00000599538 NRXN3Q9Y4C0 1643 aa19.25■□□□□ 0.67
VRK3-217ENST00000599538 TNRQ92752 1358 aa19.24■□□□□ 0.67
VRK3-217ENST00000599538 CEBPAP49715 358 aaPredicted RBP19.24■□□□□ 0.67
VRK3-217ENST00000599538 A0A1W2PP64 1363 aa19.23■□□□□ 0.67
VRK3-217ENST00000599538 CGNL1Q0VF96 1302 aa19.23■□□□□ 0.67
VRK3-217ENST00000599538 USP32Q8NFA0 1604 aa19.23■□□□□ 0.67
VRK3-217ENST00000599538 RCAN3Q9UKA8 241 aa19.22■□□□□ 0.67
VRK3-217ENST00000599538 METP08581 1390 aa19.22■□□□□ 0.67
VRK3-217ENST00000599538 CDK19Q9BWU1 502 aa19.21■□□□□ 0.67
VRK3-217ENST00000599538 POLR3AO14802 1390 aaPredicted RBP19.21■□□□□ 0.67
VRK3-217ENST00000599538 ZNF521Q96K83 1311 aa19.2■□□□□ 0.66
VRK3-217ENST00000599538 CD163L1Q9NR16 1453 aa19.2■□□□□ 0.66
VRK3-217ENST00000599538 APAF1O14727 1248 aa19.19■□□□□ 0.66
VRK3-217ENST00000599538 RRP1P56182 461 aaKnown RBP19.19■□□□□ 0.66
VRK3-217ENST00000599538 ATAD2Q6PL18 1390 aa19.18■□□□□ 0.66
VRK3-217ENST00000599538 MTHFSP49914 203 aa19.18■□□□□ 0.66
VRK3-217ENST00000599538 TRHP20396 242 aaPredicted RBP19.18■□□□□ 0.66
VRK3-217ENST00000599538 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.18■□□□□ 0.66
VRK3-217ENST00000599538 SHPRHQ149N8 1683 aa19.17■□□□□ 0.66
VRK3-217ENST00000599538 ABCC11Q96J66 1382 aa19.17■□□□□ 0.66
VRK3-217ENST00000599538 UBR1Q8IWV7 1749 aa19.17■□□□□ 0.66
VRK3-217ENST00000599538 PLPPR3Q6T4P5 718 aa19.17■□□□□ 0.66
VRK3-217ENST00000599538 DLC1Q96QB1 1528 aa19.17■□□□□ 0.66
VRK3-217ENST00000599538 GGNBP2Q9H3C7 697 aa19.16■□□□□ 0.66
VRK3-217ENST00000599538 CABP1Q9NZU7 370 aa19.16■□□□□ 0.66
VRK3-217ENST00000599538 TXNDC2Q86VQ3 553 aa19.16■□□□□ 0.66
VRK3-217ENST00000599538 TMEM2Q9UHN6 1383 aa19.16■□□□□ 0.66
VRK3-217ENST00000599538 NINLQ9Y2I6 1382 aa19.16■□□□□ 0.66
VRK3-217ENST00000599538 DUSP27Q5VZP5 1158 aa19.15■□□□□ 0.66
VRK3-217ENST00000599538 SPINK5Q9NQ38 1064 aaPredicted RBP19.14■□□□□ 0.65
VRK3-217ENST00000599538 LTKP29376 864 aa19.13■□□□□ 0.65
VRK3-217ENST00000599538 FYB1O15117 783 aa19.13■□□□□ 0.65
VRK3-217ENST00000599538 NSD2O96028 1365 aa19.13■□□□□ 0.65
VRK3-217ENST00000599538 PLIN1O60240 522 aa19.12■□□□□ 0.65
VRK3-217ENST00000599538 GOLGA2Q08379 1002 aa19.12■□□□□ 0.65
VRK3-217ENST00000599538 TERF2IPQ9NYB0 399 aa19.12■□□□□ 0.65
VRK3-217ENST00000599538 DMRT2Q9Y5R5 561 aa19.12■□□□□ 0.65
VRK3-217ENST00000599538 NLRP1Q9C000 1473 aa19.11■□□□□ 0.65
VRK3-217ENST00000599538 EXOC6Q8TAG9 804 aa19.1■□□□□ 0.65
VRK3-217ENST00000599538 HDGFP51858 240 aaKnown RBP19.1■□□□□ 0.65
VRK3-217ENST00000599538 C3P01024 1663 aa19.1■□□□□ 0.65
VRK3-217ENST00000599538 SLFN5Q08AF3 891 aa19.09■□□□□ 0.65
VRK3-217ENST00000599538 ADAMTS13Q76LX8 1427 aa19.09■□□□□ 0.65
VRK3-217ENST00000599538 NCKAP5LQ9HCH0 1330 aa19.09■□□□□ 0.65
VRK3-217ENST00000599538 HDGFL2Q7Z4V5 671 aaPredicted RBP19.08■□□□□ 0.64
VRK3-217ENST00000599538 WASLO00401 505 aaPredicted RBP19.07■□□□□ 0.64
VRK3-217ENST00000599538 TRMT2AQ8IZ69 625 aaKnown RBP19.07■□□□□ 0.64
VRK3-217ENST00000599538 CCDC136Q96JN2 1154 aa19.07■□□□□ 0.64
VRK3-217ENST00000599538 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.06■□□□□ 0.64
VRK3-217ENST00000599538 RRP7AQ9Y3A4 280 aaKnown RBP19.06■□□□□ 0.64
VRK3-217ENST00000599538 TECPR2O15040 1411 aa19.06■□□□□ 0.64
VRK3-217ENST00000599538 NEUROD2Q15784 382 aa19.06■□□□□ 0.64
VRK3-217ENST00000599538 CFAP53Q96M91 514 aa19.06■□□□□ 0.64
VRK3-217ENST00000599538 FBLN1P23142 703 aa19.05■□□□□ 0.64
VRK3-217ENST00000599538 SLC26A8Q96RN1 970 aa19.05■□□□□ 0.64
VRK3-217ENST00000599538 ROBO2Q9HCK4 1378 aa19.05■□□□□ 0.64
VRK3-217ENST00000599538 FER1L4A9Z1Z3 1794 aa19.05■□□□□ 0.64
VRK3-217ENST00000599538 KNDC1Q76NI1 1749 aa19.05■□□□□ 0.64
VRK3-217ENST00000599538 ANKRD26Q9UPS8 1709 aa19.04■□□□□ 0.64
VRK3-217ENST00000599538 TCP11L2Q8N4U5 519 aa19.04■□□□□ 0.64
VRK3-217ENST00000599538 RUNDC1Q96C34 613 aa19.04■□□□□ 0.64
VRK3-217ENST00000599538 RBM19Q9Y4C8 960 aaKnown RBP19.04■□□□□ 0.64
VRK3-217ENST00000599538 FAM135BQ49AJ0 1406 aa19.04■□□□□ 0.64
VRK3-217ENST00000599538 CPS1P31327 1500 aa19.03■□□□□ 0.64
VRK3-217ENST00000599538 WWC1Q8IX03 1113 aa19.03■□□□□ 0.64
VRK3-217ENST00000599538 PLEKHG1Q9ULL1 1385 aa19.03■□□□□ 0.64
VRK3-217ENST00000599538 C20orf194Q5TEA3 1177 aa19.03■□□□□ 0.64
VRK3-217ENST00000599538 MED14O60244 1454 aa19.02■□□□□ 0.64
VRK3-217ENST00000599538 IQSEC2Q5JU85 1478 aa19.02■□□□□ 0.64
VRK3-217ENST00000599538 PPIP5K1Q6PFW1 1433 aa19.02■□□□□ 0.64
VRK3-217ENST00000599538 U2AF1L5P0DN76 240 aaPredicted RBP19.02■□□□□ 0.64
VRK3-217ENST00000599538 U2AF1Q01081 240 aaKnown RBP eCLIP19.02■□□□□ 0.64
VRK3-217ENST00000599538 NUDT16Q96DE0 195 aaKnown RBP19.02■□□□□ 0.64
VRK3-217ENST00000599538 SIRT1Q96EB6 747 aa19.01■□□□□ 0.63
VRK3-217ENST00000599538 ATP7BP35670 1465 aa19.01■□□□□ 0.63
VRK3-217ENST00000599538 KIF20BQ96Q89 1820 aa19.01■□□□□ 0.63
VRK3-217ENST00000599538 COL3A1P02461 1466 aaPredicted RBP19■□□□□ 0.63
VRK3-217ENST00000599538 PRR36Q9H6K5 1346 aa19■□□□□ 0.63
VRK3-217ENST00000599538 CPSF1Q10570 1443 aaKnown RBP19■□□□□ 0.63
VRK3-217ENST00000599538 PTPRUQ92729 1446 aa19■□□□□ 0.63
VRK3-217ENST00000599538 CRBNQ96SW2 442 aa18.99■□□□□ 0.63
VRK3-217ENST00000599538 ZRANB1Q9UGI0 708 aa18.99■□□□□ 0.63
VRK3-217ENST00000599538 E9PSI1 815 aa18.98■□□□□ 0.63
VRK3-217ENST00000599538 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.98■□□□□ 0.63
VRK3-217ENST00000599538 U2SURPO15042 1029 aaKnown RBP18.98■□□□□ 0.63
VRK3-217ENST00000599538 NKTRP30414 1462 aaKnown RBP18.97■□□□□ 0.63
VRK3-217ENST00000599538 NME9Q86XW9 330 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms