RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	ESCO1	Q5FWF5	840 aa		28.89	■■■□□ 2.22
IRF3-222	ENST00000599144	WAPL	Q7Z5K2	1190 aa		28.88	■■■□□ 2.21
IRF3-222	ENST00000599144	USP21	Q9UK80	565 aa		28.88	■■■□□ 2.21
IRF3-222	ENST00000599144	PRAG1	Q86YV5	1406 aa		28.87	■■■□□ 2.21
IRF3-222	ENST00000599144	LAMC1	P11047	1609 aa		28.86	■■■□□ 2.21
IRF3-222	ENST00000599144	PPL	O60437	1756 aa		28.85	■■■□□ 2.21
IRF3-222	ENST00000599144	TMEM132E	Q6IEE7	984 aa		28.84	■■■□□ 2.21
IRF3-222	ENST00000599144	FOXO3	O43524	673 aa		28.83	■■■□□ 2.21
IRF3-222	ENST00000599144	PLEKHH1	Q9ULM0	1364 aa		28.83	■■■□□ 2.21
IRF3-222	ENST00000599144	CCDC144A	A2RUR9	1427 aa		28.8	■■■□□ 2.2
IRF3-222	ENST00000599144	NPHP3	Q7Z494	1330 aa		28.79	■■■□□ 2.2
IRF3-222	ENST00000599144	FNBP4	Q8N3X1	1017 aa	Predicted RBP	28.79	■■■□□ 2.2
IRF3-222	ENST00000599144	TRPC5	Q9UL62	973 aa	Predicted RBP	28.79	■■■□□ 2.2
IRF3-222	ENST00000599144	SPATA31E1	Q6ZUB1	1445 aa		28.78	■■■□□ 2.2
IRF3-222	ENST00000599144	CDC42BPG	Q6DT37	1551 aa		28.78	■■■□□ 2.2
IRF3-222	ENST00000599144	PXDN	Q92626	1479 aa		28.78	■■■□□ 2.2
IRF3-222	ENST00000599144	MPHOSPH9	Q99550	1183 aa		28.77	■■■□□ 2.2
IRF3-222	ENST00000599144	MYOM2	P54296	1465 aa		28.77	■■■□□ 2.2
IRF3-222	ENST00000599144	LRPPRC	P42704	1394 aa	Known RBP	28.75	■■■□□ 2.19
IRF3-222	ENST00000599144	ATRN	O75882	1429 aa		28.75	■■■□□ 2.19
IRF3-222	ENST00000599144	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.73	■■■□□ 2.19
IRF3-222	ENST00000599144	TECPR2	O15040	1411 aa		28.72	■■■□□ 2.19
IRF3-222	ENST00000599144	ATAD2	Q6PL18	1390 aa		28.72	■■■□□ 2.19
IRF3-222	ENST00000599144	BCL9L	Q86UU0	1499 aa		28.71	■■■□□ 2.19
IRF3-222	ENST00000599144	PLEKHG5	O94827	1062 aa		28.7	■■■□□ 2.18
IRF3-222	ENST00000599144	ANKRD30B	Q9BXX2	1392 aa		28.7	■■■□□ 2.18
IRF3-222	ENST00000599144	ABCC11	Q96J66	1382 aa		28.69	■■■□□ 2.18
IRF3-222	ENST00000599144	PIK3C2G	O75747	1445 aa		28.68	■■■□□ 2.18
IRF3-222	ENST00000599144	YTHDC2	Q9H6S0	1430 aa	Known RBP	28.67	■■■□□ 2.18
IRF3-222	ENST00000599144	IFT172	Q9UG01	1749 aa		28.63	■■■□□ 2.17
IRF3-222	ENST00000599144	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.63	■■■□□ 2.17
IRF3-222	ENST00000599144	CFAP70	Q5T0N1	1121 aa		28.63	■■■□□ 2.17
IRF3-222	ENST00000599144	SPATA31A3	Q5VYP0	1347 aa		28.63	■■■□□ 2.17
IRF3-222	ENST00000599144	KRT28	Q7Z3Y7	464 aa		28.62	■■■□□ 2.17
IRF3-222	ENST00000599144	GJD4	Q96KN9	370 aa	Predicted RBP	28.62	■■■□□ 2.17
IRF3-222	ENST00000599144	CABLES1	Q8TDN4	633 aa		28.6	■■■□□ 2.17
IRF3-222	ENST00000599144	C14orf93	Q9H972	538 aa	Known RBP	28.59	■■■□□ 2.17
IRF3-222	ENST00000599144	FMN2	Q9NZ56	1722 aa		28.58	■■■□□ 2.17
IRF3-222	ENST00000599144	KNDC1	Q76NI1	1749 aa		28.57	■■■□□ 2.16
IRF3-222	ENST00000599144	UNC5CL	Q8IV45	518 aa		28.56	■■■□□ 2.16
IRF3-222	ENST00000599144	PHF8	Q9UPP1	1060 aa		28.56	■■■□□ 2.16
IRF3-222	ENST00000599144	PRAM1	Q96QH2	718 aa		28.55	■■■□□ 2.16
IRF3-222	ENST00000599144	SLIT2	O94813	1529 aa		28.54	■■■□□ 2.16
IRF3-222	ENST00000599144	RALGAPB	Q86X10	1494 aa		28.54	■■■□□ 2.16
IRF3-222	ENST00000599144	HAP1	P54257	671 aa	Predicted RBP	28.53	■■■□□ 2.16
IRF3-222	ENST00000599144	LMOD2	Q6P5Q4	547 aa		28.53	■■■□□ 2.16
IRF3-222	ENST00000599144	GLI3	P10071	1580 aa		28.52	■■■□□ 2.16
IRF3-222	ENST00000599144	MARF1	Q9Y4F3	1742 aa	Known RBP	28.52	■■■□□ 2.16
IRF3-222	ENST00000599144	PMFBP1	Q8TBY8	1022 aa		28.51	■■■□□ 2.15
IRF3-222	ENST00000599144	SIRT1	Q96EB6	747 aa		28.51	■■■□□ 2.15
IRF3-222	ENST00000599144	DHX57	Q6P158	1386 aa	Known RBP	28.5	■■■□□ 2.15
IRF3-222	ENST00000599144	NRXN1	Q9ULB1	1477 aa		28.5	■■■□□ 2.15
IRF3-222	ENST00000599144	TNS3	Q68CZ2	1445 aa		28.5	■■■□□ 2.15
IRF3-222	ENST00000599144	KIF1A	Q12756	1690 aa		28.49	■■■□□ 2.15
IRF3-222	ENST00000599144	ZRANB1	Q9UGI0	708 aa		28.49	■■■□□ 2.15
IRF3-222	ENST00000599144	USP32	Q8NFA0	1604 aa		28.47	■■■□□ 2.15
IRF3-222	ENST00000599144	PSME1	Q06323	249 aa		28.46	■■■□□ 2.15
IRF3-222	ENST00000599144	HIRIP3	Q9BW71	556 aa	Predicted RBP	28.46	■■■□□ 2.15
IRF3-222	ENST00000599144	POGK	Q9P215	609 aa		28.46	■■■□□ 2.15
IRF3-222	ENST00000599144	SEPT12	Q8IYM1	358 aa		28.45	■■■□□ 2.14
IRF3-222	ENST00000599144	CCDC9	Q9Y3X0	531 aa	Known RBP	28.45	■■■□□ 2.14
IRF3-222	ENST00000599144	RGPD8	O14715	1765 aa	Predicted RBP	28.44	■■■□□ 2.14
IRF3-222	ENST00000599144	DEFB132	Q7Z7B7	95 aa		28.43	■■■□□ 2.14
IRF3-222	ENST00000599144	TRAK1	Q9UPV9	953 aa		28.43	■■■□□ 2.14
IRF3-222	ENST00000599144	CCDC125	Q86Z20	511 aa		28.42	■■■□□ 2.14
IRF3-222	ENST00000599144	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	28.42	■■■□□ 2.14
IRF3-222	ENST00000599144	RAB3GAP2	Q9H2M9	1393 aa		28.41	■■■□□ 2.14
IRF3-222	ENST00000599144	VPS72	Q15906	364 aa		28.41	■■■□□ 2.14
IRF3-222	ENST00000599144	KDM2A	Q9Y2K7	1162 aa		28.41	■■■□□ 2.14
IRF3-222	ENST00000599144	SBNO1	A3KN83	1393 aa		28.4	■■■□□ 2.14
IRF3-222	ENST00000599144	MINK1	Q8N4C8	1332 aa	Predicted RBP	28.4	■■■□□ 2.14
IRF3-222	ENST00000599144	FAM83G	A6ND36	823 aa		28.39	■■■□□ 2.14
IRF3-222	ENST00000599144	EP400	Q96L91	3159 aa		28.39	■■■□□ 2.13
IRF3-222	ENST00000599144	PRR36	Q9H6K5	1346 aa		28.38	■■■□□ 2.13
IRF3-222	ENST00000599144	BLM	P54132	1417 aa	Predicted RBP	28.37	■■■□□ 2.13
IRF3-222	ENST00000599144	SRCAP	Q6ZRS2	3230 aa		28.37	■■■□□ 2.13
IRF3-222	ENST00000599144	ADGRB1	O14514	1584 aa		28.36	■■■□□ 2.13
IRF3-222	ENST00000599144	ARHGEF10	O15013	1369 aa		28.36	■■■□□ 2.13
IRF3-222	ENST00000599144	DLC1	Q96QB1	1528 aa		28.35	■■■□□ 2.13
IRF3-222	ENST00000599144		A0A0G2JS52	829 aa		28.34	■■■□□ 2.13
IRF3-222	ENST00000599144	MYT1	Q01538	1121 aa		28.34	■■■□□ 2.13
IRF3-222	ENST00000599144	ANKAR	Q7Z5J8	1434 aa		28.34	■■■□□ 2.13
IRF3-222	ENST00000599144	PLCH1	Q4KWH8	1693 aa		28.33	■■■□□ 2.13
IRF3-222	ENST00000599144	DCAF11	Q8TEB1	546 aa		28.32	■■■□□ 2.12
IRF3-222	ENST00000599144	ABCA3	Q99758	1704 aa		28.32	■■■□□ 2.12
IRF3-222	ENST00000599144	BRWD3	Q6RI45	1802 aa		28.32	■■■□□ 2.12
IRF3-222	ENST00000599144	KRT27	Q7Z3Y8	459 aa		28.31	■■■□□ 2.12
IRF3-222	ENST00000599144	FAM98C	Q17RN3	349 aa	Known RBP	28.3	■■■□□ 2.12
IRF3-222	ENST00000599144	BTG4	Q9NY30	223 aa		28.3	■■■□□ 2.12
IRF3-222	ENST00000599144	ACIN1	Q9UKV3	1341 aa	Known RBP	28.29	■■■□□ 2.12
IRF3-222	ENST00000599144	ONECUT3	O60422	494 aa	Predicted RBP	28.29	■■■□□ 2.12
IRF3-222	ENST00000599144	ADGRB2	O60241	1585 aa		28.28	■■■□□ 2.12
IRF3-222	ENST00000599144	SF3B2	Q13435	895 aa	Known RBP	28.28	■■■□□ 2.12
IRF3-222	ENST00000599144	WASL	O00401	505 aa	Predicted RBP	28.27	■■■□□ 2.12
IRF3-222	ENST00000599144	GPRASP1	Q5JY77	1395 aa		28.26	■■■□□ 2.12
IRF3-222	ENST00000599144	FAM182B	Q5T319	152 aa		28.26	■■■□□ 2.11
IRF3-222	ENST00000599144	PAK3	O75914	559 aa	Predicted RBP	28.25	■■■□□ 2.11
IRF3-222	ENST00000599144	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.25	■■■□□ 2.11
IRF3-222	ENST00000599144	NGDN	Q8NEJ9	315 aa	Known RBP	28.24	■■■□□ 2.11
IRF3-222	ENST00000599144	NWD2	Q9ULI1	1742 aa		28.23	■■■□□ 2.11

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms