RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SAFB2Q14151 953 aaKnown RBP eCLIP21.42■■□□□ 1.02
UPF1-206ENST00000598471 CERKQ8TCT0 537 aa21.42■■□□□ 1.02
UPF1-206ENST00000598471 EVC2Q86UK5 1308 aa21.41■■□□□ 1.02
UPF1-206ENST00000598471 ROBO2Q9HCK4 1378 aa21.4■■□□□ 1.02
UPF1-206ENST00000598471 WAPLQ7Z5K2 1190 aa21.4■■□□□ 1.02
UPF1-206ENST00000598471 CHD2O14647 1828 aaKnown RBP21.39■■□□□ 1.02
UPF1-206ENST00000598471 PLEKHH1Q9ULM0 1364 aa21.38■■□□□ 1.01
UPF1-206ENST00000598471 MINK1Q8N4C8 1332 aaPredicted RBP21.38■■□□□ 1.01
UPF1-206ENST00000598471 LTBP4Q8N2S1 1624 aa21.37■■□□□ 1.01
UPF1-206ENST00000598471 NWD1Q149M9 1564 aa21.37■■□□□ 1.01
UPF1-206ENST00000598471 KCNA6P17658 529 aa21.37■■□□□ 1.01
UPF1-206ENST00000598471 PUS7Q96PZ0 661 aaKnown RBP21.37■■□□□ 1.01
UPF1-206ENST00000598471 TULP4Q9NRJ4 1543 aa21.36■■□□□ 1.01
UPF1-206ENST00000598471 NKTRP30414 1462 aaKnown RBP21.33■■□□□ 1.01
UPF1-206ENST00000598471 ADGRB2O60241 1585 aa21.32■■□□□ 1
UPF1-206ENST00000598471 SRPK2P78362 688 aaKnown RBP21.32■■□□□ 1
UPF1-206ENST00000598471 ATAD2Q6PL18 1390 aa21.31■■□□□ 1
UPF1-206ENST00000598471 RBM33Q96EV2 1170 aaKnown RBP21.3■■□□□ 1
UPF1-206ENST00000598471 WASLO00401 505 aaPredicted RBP21.29■■□□□ 1
UPF1-206ENST00000598471 CDK19Q9BWU1 502 aa21.29■■□□□ 1
UPF1-206ENST00000598471 NINLQ9Y2I6 1382 aa21.28■■□□□ 1
UPF1-206ENST00000598471 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.28■■□□□ 1
UPF1-206ENST00000598471 PROSER2Q86WR7 435 aaPredicted RBP21.27■■□□□ 1
UPF1-206ENST00000598471 CABP2Q9NPB3 220 aa21.27■■□□□ 1
UPF1-206ENST00000598471 STRCP1A6NGW2 1772 aa21.26■□□□□ 0.99
UPF1-206ENST00000598471 MYOM1P52179 1685 aa21.25■□□□□ 0.99
UPF1-206ENST00000598471 TMC1Q8TDI8 760 aa21.24■□□□□ 0.99
UPF1-206ENST00000598471 ADGRL3Q9HAR2 1447 aa21.23■□□□□ 0.99
UPF1-206ENST00000598471 C14orf37Q86TY3 774 aa21.22■□□□□ 0.99
UPF1-206ENST00000598471 LRRC7Q96NW7 1537 aa21.22■□□□□ 0.99
UPF1-206ENST00000598471 CDC42BPGQ6DT37 1551 aa21.22■□□□□ 0.99
UPF1-206ENST00000598471 NCOA3Q9Y6Q9 1424 aa21.21■□□□□ 0.99
UPF1-206ENST00000598471 PANK3Q9H999 370 aa21.21■□□□□ 0.99
UPF1-206ENST00000598471 ANP32CO43423 234 aa21.2■□□□□ 0.98
UPF1-206ENST00000598471 ILDR1Q86SU0 546 aaPredicted RBP21.2■□□□□ 0.98
UPF1-206ENST00000598471 FBXO41Q8TF61 875 aa21.2■□□□□ 0.98
UPF1-206ENST00000598471 NALCNQ8IZF0 1738 aa21.2■□□□□ 0.98
UPF1-206ENST00000598471 NUDT16Q96DE0 195 aaKnown RBP21.19■□□□□ 0.98
UPF1-206ENST00000598471 TMEM94Q12767 1356 aa21.19■□□□□ 0.98
UPF1-206ENST00000598471 ATP7BP35670 1465 aa21.18■□□□□ 0.98
UPF1-206ENST00000598471 SLC12A5Q9H2X9 1139 aa21.17■□□□□ 0.98
UPF1-206ENST00000598471 TERF2IPQ9NYB0 399 aa21.17■□□□□ 0.98
UPF1-206ENST00000598471 CCDC61Q9Y6R9 512 aa21.17■□□□□ 0.98
UPF1-206ENST00000598471 ANKRD36BQ8N2N9 1353 aa21.17■□□□□ 0.98
UPF1-206ENST00000598471 ANKARQ7Z5J8 1434 aa21.17■□□□□ 0.98
UPF1-206ENST00000598471 UBAP1LF5GYI3 381 aa21.16■□□□□ 0.98
UPF1-206ENST00000598471 KNSTRNQ9Y448 316 aa21.16■□□□□ 0.98
UPF1-206ENST00000598471 FMN2Q9NZ56 1722 aa21.15■□□□□ 0.98
UPF1-206ENST00000598471 PPIP5K1Q6PFW1 1433 aa21.15■□□□□ 0.98
UPF1-206ENST00000598471 HDGFL2Q7Z4V5 671 aaPredicted RBP21.15■□□□□ 0.98
UPF1-206ENST00000598471 ITSN1Q15811 1721 aa21.13■□□□□ 0.97
UPF1-206ENST00000598471 C19orf44Q9H6X5 657 aa21.13■□□□□ 0.97
UPF1-206ENST00000598471 CABP1Q9NZU7 370 aa21.13■□□□□ 0.97
UPF1-206ENST00000598471 IQSEC2Q5JU85 1478 aa21.13■□□□□ 0.97
UPF1-206ENST00000598471 DCCP43146 1447 aa21.12■□□□□ 0.97
UPF1-206ENST00000598471 TOPAZ1Q8N9V7 1692 aa21.12■□□□□ 0.97
UPF1-206ENST00000598471 PRR36Q9H6K5 1346 aa21.12■□□□□ 0.97
UPF1-206ENST00000598471 PER1O15534 1290 aaPredicted RBP21.12■□□□□ 0.97
UPF1-206ENST00000598471 MSH6P52701 1360 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 NUTM2FA1L443 756 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 TOM1O60784 492 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 MIER1Q8N108 512 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 USP32Q8NFA0 1604 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 NSD3Q9BZ95 1437 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 A0A1W2PP64 1363 aa21.1■□□□□ 0.97
UPF1-206ENST00000598471 KTN1Q86UP2 1357 aaKnown RBP21.1■□□□□ 0.97
UPF1-206ENST00000598471 ATF3P18847 181 aa21.09■□□□□ 0.97
UPF1-206ENST00000598471 PLEKHG3A1L390 1219 aa21.08■□□□□ 0.97
UPF1-206ENST00000598471 PIP4K2BP78356 416 aa21.08■□□□□ 0.97
UPF1-206ENST00000598471 NPC1L1Q9UHC9 1359 aa21.08■□□□□ 0.96
UPF1-206ENST00000598471 CD163L1Q9NR16 1453 aa21.07■□□□□ 0.96
UPF1-206ENST00000598471 CADPS2Q86UW7 1296 aa21.06■□□□□ 0.96
UPF1-206ENST00000598471 ZNF692Q9BU19 519 aaPredicted RBP21.06■□□□□ 0.96
UPF1-206ENST00000598471 CARD14Q9BXL6 1004 aa21.06■□□□□ 0.96
UPF1-206ENST00000598471 PRKRIP1Q9H875 184 aaPredicted RBP21.06■□□□□ 0.96
UPF1-206ENST00000598471 XIRP1Q702N8 1843 aaKnown RBP21.06■□□□□ 0.96
UPF1-206ENST00000598471 CPSF1Q10570 1443 aaKnown RBP21.05■□□□□ 0.96
UPF1-206ENST00000598471 RALBP1Q15311 655 aa21.05■□□□□ 0.96
UPF1-206ENST00000598471 CGNL1Q0VF96 1302 aa21.04■□□□□ 0.96
UPF1-206ENST00000598471 SCAF1Q9H7N4 1312 aaKnown RBP21.04■□□□□ 0.96
UPF1-206ENST00000598471 NSD2O96028 1365 aa21.03■□□□□ 0.96
UPF1-206ENST00000598471 AMER1Q5JTC6 1135 aaPredicted RBP21.03■□□□□ 0.96
UPF1-206ENST00000598471 EDC4Q6P2E9 1401 aaKnown RBP21.03■□□□□ 0.96
UPF1-206ENST00000598471 ACEP12821 1306 aa21.03■□□□□ 0.96
UPF1-206ENST00000598471 CNGB1Q14028 1251 aaPredicted RBP21.02■□□□□ 0.96
UPF1-206ENST00000598471 CC2D1BQ5T0F9 858 aaKnown RBP21.02■□□□□ 0.96
UPF1-206ENST00000598471 NGDNQ8NEJ9 315 aaKnown RBP21.02■□□□□ 0.96
UPF1-206ENST00000598471 AKAP12Q02952 1782 aa21.02■□□□□ 0.96
UPF1-206ENST00000598471 POLR3AO14802 1390 aaPredicted RBP21.01■□□□□ 0.95
UPF1-206ENST00000598471 SLAIN2Q9P270 581 aa21.01■□□□□ 0.95
UPF1-206ENST00000598471 PHF8Q9UPP1 1060 aa21.01■□□□□ 0.95
UPF1-206ENST00000598471 MON2Q7Z3U7 1717 aa21.01■□□□□ 0.95
UPF1-206ENST00000598471 C1orf167Q5SNV9 1468 aa21.01■□□□□ 0.95
UPF1-206ENST00000598471 RGPD8O14715 1765 aaPredicted RBP21■□□□□ 0.95
UPF1-206ENST00000598471 PARD3Q8TEW0 1356 aa21■□□□□ 0.95
UPF1-206ENST00000598471 CCER2I3L3R5 266 aa21■□□□□ 0.95
UPF1-206ENST00000598471 PMFBP1Q8TBY8 1022 aa21■□□□□ 0.95
UPF1-206ENST00000598471 MST1RQ04912 1400 aa20.99■□□□□ 0.95
UPF1-206ENST00000598471 ESCO1Q5FWF5 840 aa20.99■□□□□ 0.95
UPF1-206ENST00000598471 USP6P35125 1406 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms