RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 NISCHQ9Y2I1 1504 aa35.85■■■■□ 3.33
UPF1-206ENST00000598471 CCDC180Q9P1Z9 1646 aa31.54■■■□□ 2.64
UPF1-206ENST00000598471 ABCC9O60706 1549 aa30.49■■■□□ 2.47
UPF1-206ENST00000598471 ZCCHC6Q5VYS8 1495 aaKnown RBP30.05■■■□□ 2.4
UPF1-206ENST00000598471 DCAF1Q9Y4B6 1507 aa29.72■■■□□ 2.35
UPF1-206ENST00000598471 DCAF8L2P0C7V8 631 aa29.66■■■□□ 2.34
UPF1-206ENST00000598471 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
UPF1-206ENST00000598471 NACADO15069 1562 aa29.47■■■□□ 2.31
UPF1-206ENST00000598471 RB1CC1Q8TDY2 1594 aa29.31■■■□□ 2.28
UPF1-206ENST00000598471 SCRIBQ14160 1630 aa28.85■■■□□ 2.21
UPF1-206ENST00000598471 SHROOM4Q9ULL8 1493 aa28.84■■■□□ 2.21
UPF1-206ENST00000598471 PABPN1Q86U42 306 aaKnown RBP eCLIP28.66■■■□□ 2.18
UPF1-206ENST00000598471 UNC13AQ9UPW8 1703 aa28.57■■■□□ 2.16
UPF1-206ENST00000598471 BICRAQ9NZM4 1560 aa28.41■■■□□ 2.14
UPF1-206ENST00000598471 DNAJC5BQ9UF47 199 aa28.07■■■□□ 2.08
UPF1-206ENST00000598471 CECR2Q9BXF3 1484 aa27.81■■■□□ 2.04
UPF1-206ENST00000598471 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
UPF1-206ENST00000598471 SMARCA4P51532 1647 aa27.66■■■□□ 2.02
UPF1-206ENST00000598471 MROH2BQ7Z745 1585 aa27.63■■■□□ 2.01
UPF1-206ENST00000598471 EIF4G1Q04637 1599 aaKnown RBP27.62■■■□□ 2.01
UPF1-206ENST00000598471 RSF1Q96T23 1441 aaPredicted RBP27.61■■■□□ 2.01
UPF1-206ENST00000598471 SUPT5HO00267 1087 aaKnown RBP27.56■■■□□ 2
UPF1-206ENST00000598471 CC2D2AQ9P2K1 1620 aa27.5■■□□□ 1.99
UPF1-206ENST00000598471 WIZO95785 1651 aa27.36■■□□□ 1.97
UPF1-206ENST00000598471 PEG3Q9GZU2 1588 aa27.36■■□□□ 1.97
UPF1-206ENST00000598471 SMARCA2P51531 1590 aa27.35■■□□□ 1.97
UPF1-206ENST00000598471 ATAD2BQ9ULI0 1458 aa27.29■■□□□ 1.96
UPF1-206ENST00000598471 TOP2AP11388 1531 aaKnown RBP27.17■■□□□ 1.94
UPF1-206ENST00000598471 NCAPD3P42695 1498 aa27.16■■□□□ 1.94
UPF1-206ENST00000598471 BAZ1BQ9UIG0 1483 aaKnown RBP27.16■■□□□ 1.94
UPF1-206ENST00000598471 HMGXB3Q12766 1538 aa27.12■■□□□ 1.93
UPF1-206ENST00000598471 CCDC88BA6NC98 1476 aa26.82■■□□□ 1.88
UPF1-206ENST00000598471 NESP48681 1621 aa26.43■■□□□ 1.82
UPF1-206ENST00000598471 CFTRP13569 1480 aa26.42■■□□□ 1.82
UPF1-206ENST00000598471 CADPSQ9ULU8 1353 aa26.42■■□□□ 1.82
UPF1-206ENST00000598471 LAMC3Q9Y6N6 1575 aa26.34■■□□□ 1.81
UPF1-206ENST00000598471 PRDM2Q13029 1718 aa26.29■■□□□ 1.8
UPF1-206ENST00000598471 ERCC6Q03468 1493 aa26.19■■□□□ 1.78
UPF1-206ENST00000598471 CHIC1Q5VXU3 224 aa26.17■■□□□ 1.78
UPF1-206ENST00000598471 PDS5BQ9NTI5 1447 aa26.15■■□□□ 1.78
UPF1-206ENST00000598471 FANCD2Q9BXW9 1451 aa26.13■■□□□ 1.77
UPF1-206ENST00000598471 ABCC8Q09428 1581 aa26.08■■□□□ 1.77
UPF1-206ENST00000598471 WRNQ14191 1432 aaPredicted RBP eCLIP26.05■■□□□ 1.76
UPF1-206ENST00000598471 CEP164Q9UPV0 1460 aa26.04■■□□□ 1.76
UPF1-206ENST00000598471 TRIM41Q8WV44 630 aa26.01■■□□□ 1.75
UPF1-206ENST00000598471 KIF21AQ7Z4S6 1674 aa25.96■■□□□ 1.75
UPF1-206ENST00000598471 SYNJ1O43426 1573 aa25.91■■□□□ 1.74
UPF1-206ENST00000598471 TOP2BQ02880 1626 aa25.89■■□□□ 1.74
UPF1-206ENST00000598471 CUX1P39880 1505 aa25.88■■□□□ 1.73
UPF1-206ENST00000598471 BIVM-ERCC5R4GMW8 1640 aa25.88■■□□□ 1.73
UPF1-206ENST00000598471 DNMBPQ6XZF7 1577 aa25.85■■□□□ 1.73
UPF1-206ENST00000598471 THOC2Q8NI27 1593 aaKnown RBP25.84■■□□□ 1.73
UPF1-206ENST00000598471 MRC2Q9UBG0 1479 aa25.83■■□□□ 1.73
UPF1-206ENST00000598471 CUX2O14529 1486 aa25.82■■□□□ 1.72
UPF1-206ENST00000598471 TOPBP1Q92547 1522 aa25.79■■□□□ 1.72
UPF1-206ENST00000598471 URB2Q14146 1524 aaKnown RBP25.78■■□□□ 1.72
UPF1-206ENST00000598471 WDR62O43379 1518 aa25.7■■□□□ 1.7
UPF1-206ENST00000598471 FGD5Q6ZNL6 1462 aa25.69■■□□□ 1.7
UPF1-206ENST00000598471 POLA1P09884 1462 aaPredicted RBP25.62■■□□□ 1.69
UPF1-206ENST00000598471 SOGA1O94964 1423 aa25.54■■□□□ 1.68
UPF1-206ENST00000598471 EEA1Q15075 1411 aa25.54■■□□□ 1.68
UPF1-206ENST00000598471 RAD54L2Q9Y4B4 1467 aa25.49■■□□□ 1.67
UPF1-206ENST00000598471 ABCA10Q8WWZ4 1543 aa25.48■■□□□ 1.67
UPF1-206ENST00000598471 KIF27Q86VH2 1401 aa25.46■■□□□ 1.67
UPF1-206ENST00000598471 IFT140Q96RY7 1462 aa25.46■■□□□ 1.67
UPF1-206ENST00000598471 FAM9AQ8IZU1 332 aaPredicted RBP25.44■■□□□ 1.66
UPF1-206ENST00000598471 TARBP1Q13395 1621 aaKnown RBP25.42■■□□□ 1.66
UPF1-206ENST00000598471 WDR97A6NE52 1622 aa25.41■■□□□ 1.66
UPF1-206ENST00000598471 RUSC2Q8N2Y8 1516 aa25.39■■□□□ 1.66
UPF1-206ENST00000598471 CSRNP3Q8WYN3 585 aa25.34■■□□□ 1.65
UPF1-206ENST00000598471 ZNF608Q9ULD9 1512 aaPredicted RBP25.31■■□□□ 1.64
UPF1-206ENST00000598471 ABCA5Q8WWZ7 1642 aa25.3■■□□□ 1.64
UPF1-206ENST00000598471 TDRD9Q8NDG6 1382 aaKnown RBP25.29■■□□□ 1.64
UPF1-206ENST00000598471 GAPVD1Q14C86 1478 aa25.28■■□□□ 1.64
UPF1-206ENST00000598471 AQRO60306 1485 aaKnown RBP eCLIP25.23■■□□□ 1.639e-9■■■■■ 44.1
UPF1-206ENST00000598471 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
UPF1-206ENST00000598471 IGF1RP08069 1367 aa25.2■■□□□ 1.63
UPF1-206ENST00000598471 EIF4G3O43432 1585 aaKnown RBP25.19■■□□□ 1.62
UPF1-206ENST00000598471 GRIN2BQ13224 1484 aa25.17■■□□□ 1.62
UPF1-206ENST00000598471 KIF21BO75037 1637 aa25.17■■□□□ 1.62
UPF1-206ENST00000598471 PBRM1Q86U86 1689 aa25.15■■□□□ 1.62
UPF1-206ENST00000598471 CUL7Q14999 1698 aa25.14■■□□□ 1.62
UPF1-206ENST00000598471 PRXQ9BXM0 1461 aa25.14■■□□□ 1.61
UPF1-206ENST00000598471 GOLGA3Q08378 1498 aa25.12■■□□□ 1.61
UPF1-206ENST00000598471 CARMIL1Q5VZK9 1371 aa25.11■■□□□ 1.61
UPF1-206ENST00000598471 DNAJC5Q9H3Z4 198 aa25.09■■□□□ 1.61
UPF1-206ENST00000598471 LOC105371045A0A1W2PR82 267 aa25.07■■□□□ 1.6
UPF1-206ENST00000598471 RAPGEF2Q9Y4G8 1499 aa25.05■■□□□ 1.6
UPF1-206ENST00000598471 EHMT2Q96KQ7 1210 aa25.04■■□□□ 1.6
UPF1-206ENST00000598471 FHAD1B1AJZ9 1412 aa25.03■■□□□ 1.6
UPF1-206ENST00000598471 MAGI1Q96QZ7 1491 aaPredicted RBP25.02■■□□□ 1.6
UPF1-206ENST00000598471 ADAMTS12P58397 1594 aa25.01■■□□□ 1.59
UPF1-206ENST00000598471 SNAPC4Q5SXM2 1469 aa25.01■■□□□ 1.59
UPF1-206ENST00000598471 UBTFP17480 764 aaKnown RBP24.98■■□□□ 1.59
UPF1-206ENST00000598471 OSCARQ8IYS5 282 aa24.97■■□□□ 1.59
UPF1-206ENST00000598471 FBLN2P98095 1184 aa24.96■■□□□ 1.59
UPF1-206ENST00000598471 TNIKQ9UKE5 1360 aa24.93■■□□□ 1.58
UPF1-206ENST00000598471 SYNJ2O15056 1496 aa24.9■■□□□ 1.58
UPF1-206ENST00000598471 CHMP7Q8WUX9 453 aaPredicted RBP24.87■■□□□ 1.57
UPF1-206ENST00000598471 GRIN2AQ12879 1464 aa24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms