RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 NSD3Q9BZ95 1437 aa22.56■■□□□ 1.2
SHKBP1-205ENST00000594973 CABP2Q9NPB3 220 aa22.56■■□□□ 1.2
SHKBP1-205ENST00000594973 IPO9Q96P70 1041 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-205ENST00000594973 SPATA31D1Q6ZQQ2 1576 aa22.54■■□□□ 1.2
SHKBP1-205ENST00000594973 ZMYM3Q14202 1370 aa22.54■■□□□ 1.2
SHKBP1-205ENST00000594973 PRAM1Q96QH2 718 aa22.53■■□□□ 1.2
SHKBP1-205ENST00000594973 A2ML1A8K2U0 1454 aa22.53■■□□□ 1.2
SHKBP1-205ENST00000594973 TULP4Q9NRJ4 1543 aa22.53■■□□□ 1.2
SHKBP1-205ENST00000594973 CDCA7LQ96GN5 454 aa22.52■■□□□ 1.2
SHKBP1-205ENST00000594973 POGKQ9P215 609 aa22.52■■□□□ 1.2
SHKBP1-205ENST00000594973 ANP32AP39687 249 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-205ENST00000594973 TNNT2P45379 298 aaPredicted RBP22.52■■□□□ 1.2
SHKBP1-205ENST00000594973 YTHDC2Q9H6S0 1430 aaKnown RBP22.52■■□□□ 1.2
SHKBP1-205ENST00000594973 INSRP06213 1382 aa22.51■■□□□ 1.19
SHKBP1-205ENST00000594973 MINK1Q8N4C8 1332 aaPredicted RBP22.51■■□□□ 1.19
SHKBP1-205ENST00000594973 SRPK2P78362 688 aaKnown RBP22.51■■□□□ 1.19
SHKBP1-205ENST00000594973 B4GALNT3Q6L9W6 998 aa22.51■■□□□ 1.19
SHKBP1-205ENST00000594973 UBE2Q2Q8WVN8 375 aa22.51■■□□□ 1.19
SHKBP1-205ENST00000594973 RIMS2Q9UQ26 1411 aa22.5■■□□□ 1.19
SHKBP1-205ENST00000594973 ALKQ9UM73 1620 aa22.49■■□□□ 1.19
SHKBP1-205ENST00000594973 PDE3BQ13370 1112 aa22.49■■□□□ 1.19
SHKBP1-205ENST00000594973 MORC1Q86VD1 984 aa22.49■■□□□ 1.19
SHKBP1-205ENST00000594973 PTPRMP28827 1452 aa22.48■■□□□ 1.19
SHKBP1-205ENST00000594973 RNF123Q5XPI4 1314 aa22.47■■□□□ 1.19
SHKBP1-205ENST00000594973 PUS7Q96PZ0 661 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-205ENST00000594973 ZBTB47Q9UFB7 747 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-205ENST00000594973 CCDC146Q8IYE0 955 aa22.46■■□□□ 1.19
SHKBP1-205ENST00000594973 CGNL1Q0VF96 1302 aa22.45■■□□□ 1.18
SHKBP1-205ENST00000594973 IL27Q8NEV9 243 aa22.44■■□□□ 1.18
SHKBP1-205ENST00000594973 ANKRD36BQ8N2N9 1353 aa22.44■■□□□ 1.18
SHKBP1-205ENST00000594973 RCAN3Q9UKA8 241 aa22.43■■□□□ 1.18
SHKBP1-205ENST00000594973 WAPLQ7Z5K2 1190 aa22.41■■□□□ 1.18
SHKBP1-205ENST00000594973 USP35Q9P2H5 1018 aa22.41■■□□□ 1.18
SHKBP1-205ENST00000594973 TNRQ92752 1358 aa22.4■■□□□ 1.18
SHKBP1-205ENST00000594973 PLEKHH1Q9ULM0 1364 aa22.4■■□□□ 1.18
SHKBP1-205ENST00000594973 CDK19Q9BWU1 502 aa22.39■■□□□ 1.17
SHKBP1-205ENST00000594973 A0A1W2PP64 1363 aa22.39■■□□□ 1.17
SHKBP1-205ENST00000594973 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.38■■□□□ 1.17
SHKBP1-205ENST00000594973 TRHP20396 242 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-205ENST00000594973 RRP1P56182 461 aaKnown RBP22.37■■□□□ 1.17
SHKBP1-205ENST00000594973 PLPPR3Q6T4P5 718 aa22.37■■□□□ 1.17
SHKBP1-205ENST00000594973 CEBPAP49715 358 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-205ENST00000594973 ATAD2Q6PL18 1390 aa22.36■■□□□ 1.17
SHKBP1-205ENST00000594973 APAF1O14727 1248 aa22.36■■□□□ 1.17
SHKBP1-205ENST00000594973 POLR3AO14802 1390 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-205ENST00000594973 MTHFSP49914 203 aa22.35■■□□□ 1.17
SHKBP1-205ENST00000594973 CCDC136Q96JN2 1154 aa22.35■■□□□ 1.17
SHKBP1-205ENST00000594973 METP08581 1390 aa22.34■■□□□ 1.17
SHKBP1-205ENST00000594973 NINLQ9Y2I6 1382 aa22.34■■□□□ 1.17
SHKBP1-205ENST00000594973 TERF2IPQ9NYB0 399 aa22.34■■□□□ 1.17
SHKBP1-205ENST00000594973 USP32Q8NFA0 1604 aa22.34■■□□□ 1.17
SHKBP1-205ENST00000594973 HDGFP51858 240 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-205ENST00000594973 GGNBP2Q9H3C7 697 aa22.32■■□□□ 1.16
SHKBP1-205ENST00000594973 CABP1Q9NZU7 370 aa22.32■■□□□ 1.16
SHKBP1-205ENST00000594973 TXNDC2Q86VQ3 553 aa22.32■■□□□ 1.16
SHKBP1-205ENST00000594973 ZNF521Q96K83 1311 aa22.32■■□□□ 1.16
SHKBP1-205ENST00000594973 GOLGA2Q08379 1002 aa22.31■■□□□ 1.16
SHKBP1-205ENST00000594973 NSD2O96028 1365 aa22.31■■□□□ 1.16
SHKBP1-205ENST00000594973 ABCC11Q96J66 1382 aa22.31■■□□□ 1.16
SHKBP1-205ENST00000594973 NRXN3Q9Y4C0 1643 aa22.3■■□□□ 1.16
SHKBP1-205ENST00000594973 TMEM2Q9UHN6 1383 aa22.3■■□□□ 1.16
SHKBP1-205ENST00000594973 DNAJC5Q9H3Z4 198 aa22.3■■□□□ 1.16
SHKBP1-205ENST00000594973 SETD1AO15047 1707 aaKnown RBP22.3■■□□□ 1.16
SHKBP1-205ENST00000594973 HDGFL2Q7Z4V5 671 aaPredicted RBP22.29■■□□□ 1.16
SHKBP1-205ENST00000594973 CD163L1Q9NR16 1453 aa22.28■■□□□ 1.16
SHKBP1-205ENST00000594973 DLC1Q96QB1 1528 aa22.28■■□□□ 1.16
SHKBP1-205ENST00000594973 PLIN1O60240 522 aa22.28■■□□□ 1.16
SHKBP1-205ENST00000594973 DUSP27Q5VZP5 1158 aa22.28■■□□□ 1.16
SHKBP1-205ENST00000594973 CFAP53Q96M91 514 aa22.28■■□□□ 1.16
SHKBP1-205ENST00000594973 FYB1O15117 783 aa22.26■■□□□ 1.15
SHKBP1-205ENST00000594973 EXOC6Q8TAG9 804 aa22.25■■□□□ 1.15
SHKBP1-205ENST00000594973 RTN4Q9NQC3 1192 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-205ENST00000594973 UBR1Q8IWV7 1749 aa22.24■■□□□ 1.15
SHKBP1-205ENST00000594973 SPINK5Q9NQ38 1064 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-205ENST00000594973 LTKP29376 864 aa22.24■■□□□ 1.15
SHKBP1-205ENST00000594973 SLFN5Q08AF3 891 aa22.24■■□□□ 1.15
SHKBP1-205ENST00000594973 NEUROD2Q15784 382 aa22.24■■□□□ 1.15
SHKBP1-205ENST00000594973 SHPRHQ149N8 1683 aa22.23■■□□□ 1.15
SHKBP1-205ENST00000594973 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.23■■□□□ 1.15
SHKBP1-205ENST00000594973 WASLO00401 505 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-205ENST00000594973 RRP7AQ9Y3A4 280 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-205ENST00000594973 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-205ENST00000594973 DMRT2Q9Y5R5 561 aa22.21■■□□□ 1.15
SHKBP1-205ENST00000594973 PPM1GO15355 546 aaPredicted RBP22.2■■□□□ 1.15
SHKBP1-205ENST00000594973 RUNDC1Q96C34 613 aa22.2■■□□□ 1.15
SHKBP1-205ENST00000594973 U2AF1L5P0DN76 240 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-205ENST00000594973 U2AF1Q01081 240 aaKnown RBP eCLIP22.2■■□□□ 1.14
SHKBP1-205ENST00000594973 NLRP1Q9C000 1473 aa22.19■■□□□ 1.14
SHKBP1-205ENST00000594973 NCKAP5LQ9HCH0 1330 aa22.18■■□□□ 1.14
SHKBP1-205ENST00000594973 NEFMP07197 916 aa22.18■■□□□ 1.14
SHKBP1-205ENST00000594973 SLC26A8Q96RN1 970 aa22.18■■□□□ 1.14
SHKBP1-205ENST00000594973 WWC1Q8IX03 1113 aa22.18■■□□□ 1.14
SHKBP1-205ENST00000594973 TCP11L2Q8N4U5 519 aa22.18■■□□□ 1.14
SHKBP1-205ENST00000594973 ADAMTS13Q76LX8 1427 aa22.17■■□□□ 1.14
SHKBP1-205ENST00000594973 E9PSI1 815 aa22.17■■□□□ 1.14
SHKBP1-205ENST00000594973 TRMT2AQ8IZ69 625 aaKnown RBP22.17■■□□□ 1.14
SHKBP1-205ENST00000594973 NGEFQ8N5V2 710 aa22.16■■□□□ 1.14
SHKBP1-205ENST00000594973 EID1Q9Y6B2 187 aa22.16■■□□□ 1.14
SHKBP1-205ENST00000594973 PPIP5K1Q6PFW1 1433 aa22.16■■□□□ 1.14
SHKBP1-205ENST00000594973 ROBO2Q9HCK4 1378 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms