RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 IFT172Q9UG01 1749 aa35.64■■■■□ 3.3
LSM4-202ENST00000593564 C8orf37Q96NL8 207 aa35.63■■■■□ 3.29
LSM4-202ENST00000593564 LRPPRCP42704 1394 aaKnown RBP35.62■■■■□ 3.29
LSM4-202ENST00000593564 PIK3C2GO75747 1445 aa35.6■■■■□ 3.29
LSM4-202ENST00000593564 STK26Q9P289 416 aa35.58■■■■□ 3.29
LSM4-202ENST00000593564 ABCC11Q96J66 1382 aa35.58■■■■□ 3.29
LSM4-202ENST00000593564 UPF1Q92900 1129 aaKnown RBP eCLIP35.57■■■■□ 3.28
LSM4-202ENST00000593564 ADAMTS2O95450 1211 aa35.55■■■■□ 3.28
LSM4-202ENST00000593564 ESCO1Q5FWF5 840 aa35.55■■■■□ 3.28
LSM4-202ENST00000593564 NPHP3Q7Z494 1330 aa35.55■■■■□ 3.28
LSM4-202ENST00000593564 TMEM132EQ6IEE7 984 aa35.54■■■■□ 3.28
LSM4-202ENST00000593564 WAPLQ7Z5K2 1190 aa35.54■■■■□ 3.28
LSM4-202ENST00000593564 QTRT2Q9H974 415 aaKnown RBP35.53■■■■□ 3.28
LSM4-202ENST00000593564 KNDC1Q76NI1 1749 aa35.52■■■■□ 3.28
LSM4-202ENST00000593564 NGLY1Q96IV0 654 aa35.52■■■■□ 3.28
LSM4-202ENST00000593564 RBM6P78332 1123 aaKnown RBP35.51■■■■□ 3.28
LSM4-202ENST00000593564 COL22A1Q8NFW1 1626 aaPredicted RBP35.5■■■■□ 3.27
LSM4-202ENST00000593564 PLEKHH1Q9ULM0 1364 aa35.5■■■■□ 3.27
LSM4-202ENST00000593564 YTHDC2Q9H6S0 1430 aaKnown RBP35.49■■■■□ 3.27
LSM4-202ENST00000593564 PXDNQ92626 1479 aa35.48■■■■□ 3.27
LSM4-202ENST00000593564 RGS12O14924 1447 aa35.47■■■■□ 3.27
LSM4-202ENST00000593564 SIRT1Q96EB6 747 aa35.45■■■■□ 3.27
LSM4-202ENST00000593564 C14orf93Q9H972 538 aaKnown RBP35.45■■■■□ 3.27
LSM4-202ENST00000593564 NRXN1Q9ULB1 1477 aa35.45■■■■□ 3.27
LSM4-202ENST00000593564 MYOM2P54296 1465 aa35.44■■■■□ 3.26
LSM4-202ENST00000593564 FOXO3O43524 673 aa35.44■■■■□ 3.26
LSM4-202ENST00000593564 NUTM2FA1L443 756 aa35.42■■■■□ 3.26
LSM4-202ENST00000593564 FNBP4Q8N3X1 1017 aaPredicted RBP35.42■■■■□ 3.26
LSM4-202ENST00000593564 RAB3GAP2Q9H2M9 1393 aa35.41■■■■□ 3.26
LSM4-202ENST00000593564 USP21Q9UK80 565 aa35.41■■■■□ 3.26
LSM4-202ENST00000593564 XPCQ01831 940 aaPredicted RBP35.39■■■■□ 3.26
LSM4-202ENST00000593564 FMN2Q9NZ56 1722 aa35.38■■■■□ 3.25
LSM4-202ENST00000593564 CFAP70Q5T0N1 1121 aa35.37■■■■□ 3.25
LSM4-202ENST00000593564 TRPC5Q9UL62 973 aaPredicted RBP35.37■■■■□ 3.25
LSM4-202ENST00000593564 DHX57Q6P158 1386 aaKnown RBP35.37■■■■□ 3.25
LSM4-202ENST00000593564 KIF1AQ12756 1690 aa35.33■■■■□ 3.25
LSM4-202ENST00000593564 ATRNO75882 1429 aa35.32■■■■□ 3.25
LSM4-202ENST00000593564 SPATA31A3Q5VYP0 1347 aa35.29■■■■□ 3.24
LSM4-202ENST00000593564 BCL9LQ86UU0 1499 aa35.27■■■■□ 3.24
LSM4-202ENST00000593564 PRAM1Q96QH2 718 aa35.26■■■■□ 3.24
LSM4-202ENST00000593564 MARF1Q9Y4F3 1742 aaKnown RBP35.25■■■■□ 3.23
LSM4-202ENST00000593564 DLC1Q96QB1 1528 aa35.25■■■■□ 3.23
LSM4-202ENST00000593564 KRT28Q7Z3Y7 464 aa35.24■■■■□ 3.23
LSM4-202ENST00000593564 PHF8Q9UPP1 1060 aa35.24■■■■□ 3.23
LSM4-202ENST00000593564 ATAD2Q6PL18 1390 aa35.22■■■■□ 3.23
LSM4-202ENST00000593564 SAFB2Q14151 953 aaKnown RBP eCLIP35.21■■■■□ 3.23
LSM4-202ENST00000593564 ADGRB1O14514 1584 aa35.2■■■■□ 3.23
LSM4-202ENST00000593564 POGKQ9P215 609 aa35.19■■■■□ 3.22
LSM4-202ENST00000593564 TNS3Q68CZ2 1445 aa35.18■■■■□ 3.22
LSM4-202ENST00000593564 PSME1Q06323 249 aa35.17■■■■□ 3.22
LSM4-202ENST00000593564 RGPD8O14715 1765 aaPredicted RBP35.17■■■■□ 3.22
LSM4-202ENST00000593564 ANKARQ7Z5J8 1434 aa35.15■■■■□ 3.22
LSM4-202ENST00000593564 HRCP23327 699 aa35.15■■■■□ 3.22
LSM4-202ENST00000593564 ADGRB2O60241 1585 aa35.15■■■■□ 3.22
LSM4-202ENST00000593564 SLIT2O94813 1529 aa35.15■■■■□ 3.22
LSM4-202ENST00000593564 SBNO1A3KN83 1393 aa35.14■■■■□ 3.22
LSM4-202ENST00000593564 GJD4Q96KN9 370 aaPredicted RBP35.14■■■■□ 3.22
LSM4-202ENST00000593564 STAC3Q96MF2 364 aa35.13■■■■□ 3.21
LSM4-202ENST00000593564 USP32Q8NFA0 1604 aa35.13■■■■□ 3.21
LSM4-202ENST00000593564 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.12■■■■□ 3.21
LSM4-202ENST00000593564 UNC5CLQ8IV45 518 aa35.12■■■■□ 3.21
LSM4-202ENST00000593564 DCAF11Q8TEB1 546 aa35.11■■■■□ 3.21
LSM4-202ENST00000593564 TRAK1Q9UPV9 953 aa35.11■■■■□ 3.21
LSM4-202ENST00000593564 KDM2AQ9Y2K7 1162 aa35.1■■■■□ 3.21
LSM4-202ENST00000593564 ARHGEF10O15013 1369 aa35.08■■■■□ 3.21
LSM4-202ENST00000593564 HAP1P54257 671 aaPredicted RBP35.06■■■■□ 3.2
LSM4-202ENST00000593564 RALGAPBQ86X10 1494 aa35.05■■■■□ 3.2
LSM4-202ENST00000593564 PMFBP1Q8TBY8 1022 aa35.05■■■■□ 3.2
LSM4-202ENST00000593564 EP400Q96L91 3159 aa35.05■■■■□ 3.2
LSM4-202ENST00000593564 EIF3AQ14152 1382 aaKnown RBP35.04■■■■□ 3.2
LSM4-202ENST00000593564 CABLES1Q8TDN4 633 aa35.04■■■■□ 3.2
LSM4-202ENST00000593564 HIRIP3Q9BW71 556 aaPredicted RBP35.04■■■■□ 3.2
LSM4-202ENST00000593564 GLI3P10071 1580 aa35.02■■■■□ 3.2
LSM4-202ENST00000593564 LMOD2Q6P5Q4 547 aa35.02■■■■□ 3.2
LSM4-202ENST00000593564 MINK1Q8N4C8 1332 aaPredicted RBP35.02■■■■□ 3.2
LSM4-202ENST00000593564 TULP4Q9NRJ4 1543 aa35■■■■□ 3.19
LSM4-202ENST00000593564 PRR36Q9H6K5 1346 aa34.99■■■■□ 3.19
LSM4-202ENST00000593564 ABCA3Q99758 1704 aa34.98■■■■□ 3.19
LSM4-202ENST00000593564 WASLO00401 505 aaPredicted RBP34.98■■■■□ 3.19
LSM4-202ENST00000593564 CCDC125Q86Z20 511 aa34.97■■■■□ 3.19
LSM4-202ENST00000593564 PLEKHG5O94827 1062 aa34.96■■■■□ 3.19
LSM4-202ENST00000593564 VPS72Q15906 364 aa34.96■■■■□ 3.19
LSM4-202ENST00000593564 GPRASP1Q5JY77 1395 aa34.96■■■■□ 3.19
LSM4-202ENST00000593564 TRPM3Q9HCF6 1732 aaPredicted RBP34.95■■■■□ 3.18
LSM4-202ENST00000593564 NWD2Q9ULI1 1742 aa34.94■■■■□ 3.18
LSM4-202ENST00000593564 PLCH1Q4KWH8 1693 aa34.92■■■■□ 3.18
LSM4-202ENST00000593564 FAM83GA6ND36 823 aa34.9■■■■□ 3.18
LSM4-202ENST00000593564 ARHGEF28Q8N1W1 1705 aaKnown RBP34.89■■■■□ 3.18
LSM4-202ENST00000593564 ALS2Q96Q42 1657 aa34.89■■■■□ 3.18
LSM4-202ENST00000593564 ONECUT3O60422 494 aaPredicted RBP34.86■■■■□ 3.17
LSM4-202ENST00000593564 SEPT12Q8IYM1 358 aa34.86■■■■□ 3.17
LSM4-202ENST00000593564 NGDNQ8NEJ9 315 aaKnown RBP34.86■■■■□ 3.17
LSM4-202ENST00000593564 CCDC9Q9Y3X0 531 aaKnown RBP34.85■■■■□ 3.17
LSM4-202ENST00000593564 ATP7BP35670 1465 aa34.84■■■■□ 3.17
LSM4-202ENST00000593564 SRCAPQ6ZRS2 3230 aa34.83■■■■□ 3.17
LSM4-202ENST00000593564 BLMP54132 1417 aaPredicted RBP34.82■■■■□ 3.17
LSM4-202ENST00000593564 BRWD3Q6RI45 1802 aa34.81■■■■□ 3.16
LSM4-202ENST00000593564 NUDT16Q96DE0 195 aaKnown RBP34.81■■■■□ 3.16
LSM4-202ENST00000593564 ZRANB1Q9UGI0 708 aa34.81■■■■□ 3.16
LSM4-202ENST00000593564 ITSN1Q15811 1721 aa34.78■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms