RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 ALKQ9UM73 1620 aa13.88□□□□□ -0.19
VPS25-203ENST00000589520 DLC1Q96QB1 1528 aa13.88□□□□□ -0.19
VPS25-203ENST00000589520 MYOM1P52179 1685 aa13.88□□□□□ -0.19
VPS25-203ENST00000589520 QRICH2Q9H0J4 1663 aa13.88□□□□□ -0.19
VPS25-203ENST00000589520 NLRP1Q9C000 1473 aa13.87□□□□□ -0.19
VPS25-203ENST00000589520 CGNL1Q0VF96 1302 aa13.87□□□□□ -0.19
VPS25-203ENST00000589520 ANKRD36BQ8N2N9 1353 aa13.86□□□□□ -0.19
VPS25-203ENST00000589520 WDR43Q15061 677 aaKnown RBP eCLIP13.86□□□□□ -0.19
VPS25-203ENST00000589520 CARD14Q9BXL6 1004 aa13.86□□□□□ -0.19
VPS25-203ENST00000589520 ARHGEF28Q8N1W1 1705 aaKnown RBP13.85□□□□□ -0.19
VPS25-203ENST00000589520 BLMP54132 1417 aaPredicted RBP13.85□□□□□ -0.19
VPS25-203ENST00000589520 SLC12A5Q9H2X9 1139 aa13.85□□□□□ -0.19
VPS25-203ENST00000589520 PRAM1Q96QH2 718 aa13.84□□□□□ -0.19
VPS25-203ENST00000589520 TERF2IPQ9NYB0 399 aa13.84□□□□□ -0.19
VPS25-203ENST00000589520 STK26Q9P289 416 aa13.84□□□□□ -0.19
VPS25-203ENST00000589520 TMEM2Q9UHN6 1383 aa13.83□□□□□ -0.19
VPS25-203ENST00000589520 SRPK2P78362 688 aaKnown RBP13.83□□□□□ -0.2
VPS25-203ENST00000589520 MORC1Q86VD1 984 aa13.83□□□□□ -0.2
VPS25-203ENST00000589520 MYO5BQ9ULV0 1848 aa13.83□□□□□ -0.2
VPS25-203ENST00000589520 POLR3AO14802 1390 aaPredicted RBP13.83□□□□□ -0.2
VPS25-203ENST00000589520 USP32Q8NFA0 1604 aa13.82□□□□□ -0.2
VPS25-203ENST00000589520 PLPPR3Q6T4P5 718 aa13.82□□□□□ -0.2
VPS25-203ENST00000589520 NSD3Q9BZ95 1437 aa13.81□□□□□ -0.2
VPS25-203ENST00000589520 TULP4Q9NRJ4 1543 aa13.81□□□□□ -0.2
VPS25-203ENST00000589520 CABP2Q9NPB3 220 aa13.81□□□□□ -0.2
VPS25-203ENST00000589520 FAM135BQ49AJ0 1406 aa13.81□□□□□ -0.2
VPS25-203ENST00000589520 HDGFL2Q7Z4V5 671 aaPredicted RBP13.8□□□□□ -0.2
VPS25-203ENST00000589520 ADAMTS8Q9UP79 889 aa13.8□□□□□ -0.2
VPS25-203ENST00000589520 EID1Q9Y6B2 187 aa13.8□□□□□ -0.2
VPS25-203ENST00000589520 RNF123Q5XPI4 1314 aa13.8□□□□□ -0.2
VPS25-203ENST00000589520 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
VPS25-203ENST00000589520 CFAP53Q96M91 514 aa13.79□□□□□ -0.2
VPS25-203ENST00000589520 CDK19Q9BWU1 502 aa13.79□□□□□ -0.2
VPS25-203ENST00000589520 PLEKHG1Q9ULL1 1385 aa13.79□□□□□ -0.2
VPS25-203ENST00000589520 TECPR2O15040 1411 aa13.79□□□□□ -0.2
VPS25-203ENST00000589520 THEMISQ8N1K5 641 aaPredicted RBP13.78□□□□□ -0.2
VPS25-203ENST00000589520 STRCQ7RTU9 1775 aa13.78□□□□□ -0.2
VPS25-203ENST00000589520 MED14O60244 1454 aa13.77□□□□□ -0.21
VPS25-203ENST00000589520 PPP4R2Q9NY27 417 aa13.77□□□□□ -0.21
VPS25-203ENST00000589520 MED1Q15648 1581 aaPredicted RBP13.76□□□□□ -0.21
VPS25-203ENST00000589520 MINK1Q8N4C8 1332 aaPredicted RBP13.76□□□□□ -0.21
VPS25-203ENST00000589520 SAFB2Q14151 953 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS25-203ENST00000589520 TXNDC2Q86VQ3 553 aa13.75□□□□□ -0.21
VPS25-203ENST00000589520 BCANQ96GW7 911 aa13.75□□□□□ -0.21
VPS25-203ENST00000589520 TBX22Q9Y458 520 aa13.75□□□□□ -0.21
VPS25-203ENST00000589520 UBR1Q8IWV7 1749 aa13.74□□□□□ -0.21
VPS25-203ENST00000589520 WASLO00401 505 aaPredicted RBP13.74□□□□□ -0.21
VPS25-203ENST00000589520 SLIT1O75093 1534 aa13.74□□□□□ -0.21
VPS25-203ENST00000589520 ARHGAP23Q9P227 1491 aa13.74□□□□□ -0.21
VPS25-203ENST00000589520 SETD1AO15047 1707 aaKnown RBP13.73□□□□□ -0.21
VPS25-203ENST00000589520 A0A1W2PP64 1363 aa13.73□□□□□ -0.21
VPS25-203ENST00000589520 METP08581 1390 aa13.73□□□□□ -0.21
VPS25-203ENST00000589520 ATP7BP35670 1465 aa13.73□□□□□ -0.21
VPS25-203ENST00000589520 ZNF692Q9BU19 519 aaPredicted RBP13.72□□□□□ -0.21
VPS25-203ENST00000589520 KNDC1Q76NI1 1749 aa13.72□□□□□ -0.21
VPS25-203ENST00000589520 NRXN3Q9Y4C0 1643 aa13.72□□□□□ -0.21
VPS25-203ENST00000589520 GOLGA2Q08379 1002 aa13.71□□□□□ -0.21
VPS25-203ENST00000589520 WAPLQ7Z5K2 1190 aa13.71□□□□□ -0.21
VPS25-203ENST00000589520 CABP1Q9NZU7 370 aa13.71□□□□□ -0.21
VPS25-203ENST00000589520 ADAMTS13Q76LX8 1427 aa13.71□□□□□ -0.22
VPS25-203ENST00000589520 CEBPAP49715 358 aaPredicted RBP13.7□□□□□ -0.22
VPS25-203ENST00000589520 MTHFSP49914 203 aa13.7□□□□□ -0.22
VPS25-203ENST00000589520 PNNQ9H307 717 aaKnown RBP13.7□□□□□ -0.22
VPS25-203ENST00000589520 RCAN3Q9UKA8 241 aa13.7□□□□□ -0.22
VPS25-203ENST00000589520 CCDC61Q9Y6R9 512 aa13.7□□□□□ -0.22
VPS25-203ENST00000589520 CPS1P31327 1500 aa13.69□□□□□ -0.22
VPS25-203ENST00000589520 ZNF521Q96K83 1311 aa13.69□□□□□ -0.22
VPS25-203ENST00000589520 FYB1O15117 783 aa13.69□□□□□ -0.22
VPS25-203ENST00000589520 LTKP29376 864 aa13.69□□□□□ -0.22
VPS25-203ENST00000589520 RUNDC1Q96C34 613 aa13.69□□□□□ -0.22
VPS25-203ENST00000589520 C3P01024 1663 aa13.69□□□□□ -0.22
VPS25-203ENST00000589520 PIK3R4Q99570 1358 aa13.68□□□□□ -0.22
VPS25-203ENST00000589520 PLEKHH1Q9ULM0 1364 aa13.68□□□□□ -0.22
VPS25-203ENST00000589520 FER1L4A9Z1Z3 1794 aa13.68□□□□□ -0.22
VPS25-203ENST00000589520 CD163L1Q9NR16 1453 aa13.67□□□□□ -0.22
VPS25-203ENST00000589520 NUDT16Q96DE0 195 aaKnown RBP13.67□□□□□ -0.22
VPS25-203ENST00000589520 DIP2AQ14689 1571 aa13.66□□□□□ -0.22
VPS25-203ENST00000589520 CPSF1Q10570 1443 aaKnown RBP13.66□□□□□ -0.22
VPS25-203ENST00000589520 LTBP4Q8N2S1 1624 aa13.66□□□□□ -0.22
VPS25-203ENST00000589520 E9PSI1 815 aa13.66□□□□□ -0.22
VPS25-203ENST00000589520 CCDC27Q2M243 656 aa13.66□□□□□ -0.22
VPS25-203ENST00000589520 SALL2Q9Y467 1007 aaPredicted RBP13.66□□□□□ -0.22
VPS25-203ENST00000589520 EDC4Q6P2E9 1401 aaKnown RBP13.65□□□□□ -0.22
VPS25-203ENST00000589520 APAF1O14727 1248 aa13.65□□□□□ -0.22
VPS25-203ENST00000589520 RRP1P56182 461 aaKnown RBP13.65□□□□□ -0.22
VPS25-203ENST00000589520 SLFN5Q08AF3 891 aa13.65□□□□□ -0.22
VPS25-203ENST00000589520 TRMT2AQ8IZ69 625 aaKnown RBP13.65□□□□□ -0.22
VPS25-203ENST00000589520 SENP3Q9H4L4 574 aaPredicted RBP13.65□□□□□ -0.22
VPS25-203ENST00000589520 PLEKHG3A1L390 1219 aa13.64□□□□□ -0.23
VPS25-203ENST00000589520 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.64□□□□□ -0.23
VPS25-203ENST00000589520 CDCA7LQ96GN5 454 aa13.64□□□□□ -0.23
VPS25-203ENST00000589520 PTCH1Q13635 1447 aa13.64□□□□□ -0.23
VPS25-203ENST00000589520 PPIP5K1Q6PFW1 1433 aa13.64□□□□□ -0.23
VPS25-203ENST00000589520 ROBO2Q9HCK4 1378 aa13.63□□□□□ -0.23
VPS25-203ENST00000589520 TNNT2P45379 298 aaPredicted RBP13.63□□□□□ -0.23
VPS25-203ENST00000589520 WDR63Q8IWG1 891 aa13.63□□□□□ -0.23
VPS25-203ENST00000589520 GGNBP2Q9H3C7 697 aa13.63□□□□□ -0.23
VPS25-203ENST00000589520 AMOTL2Q9Y2J4 779 aa13.63□□□□□ -0.23
VPS25-203ENST00000589520 ADGRB2O60241 1585 aa13.62□□□□□ -0.23
VPS25-203ENST00000589520 PNPLA6Q8IY17 1366 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms