RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 TECPR2O15040 1411 aa28.91■■■□□ 2.22
TRAF4-216ENST00000586813 COL22A1Q8NFW1 1626 aaPredicted RBP28.91■■■□□ 2.22
TRAF4-216ENST00000586813 RGL3Q3MIN7 710 aa28.9■■■□□ 2.22
TRAF4-216ENST00000586813 PIK3C2GO75747 1445 aa28.89■■■□□ 2.22
TRAF4-216ENST00000586813 LRPPRCP42704 1394 aaKnown RBP28.86■■■□□ 2.21
TRAF4-216ENST00000586813 UPF1Q92900 1129 aaKnown RBP eCLIP28.85■■■□□ 2.21
TRAF4-216ENST00000586813 FMN2Q9NZ56 1722 aa28.83■■■□□ 2.21
TRAF4-216ENST00000586813 ADAMTS2O95450 1211 aa28.83■■■□□ 2.21
TRAF4-216ENST00000586813 STK26Q9P289 416 aa28.83■■■□□ 2.21
TRAF4-216ENST00000586813 RGS12O14924 1447 aa28.83■■■□□ 2.21
TRAF4-216ENST00000586813 PXDNQ92626 1479 aa28.83■■■□□ 2.21
TRAF4-216ENST00000586813 ABCC11Q96J66 1382 aa28.82■■■□□ 2.2
TRAF4-216ENST00000586813 MARF1Q9Y4F3 1742 aaKnown RBP28.81■■■□□ 2.2
TRAF4-216ENST00000586813 NPHP3Q7Z494 1330 aa28.8■■■□□ 2.2
TRAF4-216ENST00000586813 ESCO1Q5FWF5 840 aa28.8■■■□□ 2.2
TRAF4-216ENST00000586813 WAPLQ7Z5K2 1190 aa28.8■■■□□ 2.2
TRAF4-216ENST00000586813 NGLY1Q96IV0 654 aa28.8■■■□□ 2.2
TRAF4-216ENST00000586813 QTRT2Q9H974 415 aaKnown RBP28.8■■■□□ 2.2
TRAF4-216ENST00000586813 PLEKHH1Q9ULM0 1364 aa28.79■■■□□ 2.2
TRAF4-216ENST00000586813 ACIN1Q9UKV3 1341 aaKnown RBP28.79■■■□□ 2.2
TRAF4-216ENST00000586813 TMEM132EQ6IEE7 984 aa28.79■■■□□ 2.2
TRAF4-216ENST00000586813 MYOM2P54296 1465 aa28.78■■■□□ 2.2
TRAF4-216ENST00000586813 YTHDC2Q9H6S0 1430 aaKnown RBP28.78■■■□□ 2.2
TRAF4-216ENST00000586813 RBM6P78332 1123 aaKnown RBP28.78■■■□□ 2.2
TRAF4-216ENST00000586813 KIF1AQ12756 1690 aa28.77■■■□□ 2.2
TRAF4-216ENST00000586813 NRXN1Q9ULB1 1477 aa28.77■■■□□ 2.2
TRAF4-216ENST00000586813 RGPD8O14715 1765 aaPredicted RBP28.73■■■□□ 2.19
TRAF4-216ENST00000586813 NUTM2FA1L443 756 aa28.72■■■□□ 2.19
TRAF4-216ENST00000586813 FOXO3O43524 673 aa28.72■■■□□ 2.19
TRAF4-216ENST00000586813 XPCQ01831 940 aaPredicted RBP28.71■■■□□ 2.19
TRAF4-216ENST00000586813 USP21Q9UK80 565 aa28.71■■■□□ 2.19
TRAF4-216ENST00000586813 FNBP4Q8N3X1 1017 aaPredicted RBP28.69■■■□□ 2.18
TRAF4-216ENST00000586813 C14orf93Q9H972 538 aaKnown RBP28.69■■■□□ 2.18
TRAF4-216ENST00000586813 RAB3GAP2Q9H2M9 1393 aa28.69■■■□□ 2.18
TRAF4-216ENST00000586813 TRPC5Q9UL62 973 aaPredicted RBP28.67■■■□□ 2.18
TRAF4-216ENST00000586813 ATRNO75882 1429 aa28.67■■■□□ 2.18
TRAF4-216ENST00000586813 SIRT1Q96EB6 747 aa28.66■■■□□ 2.18
TRAF4-216ENST00000586813 CFAP70Q5T0N1 1121 aa28.65■■■□□ 2.18
TRAF4-216ENST00000586813 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.65■■■□□ 2.18
TRAF4-216ENST00000586813 DHX57Q6P158 1386 aaKnown RBP28.64■■■□□ 2.18
TRAF4-216ENST00000586813 BCL9LQ86UU0 1499 aa28.62■■■□□ 2.17
TRAF4-216ENST00000586813 DLC1Q96QB1 1528 aa28.62■■■□□ 2.17
TRAF4-216ENST00000586813 USP32Q8NFA0 1604 aa28.6■■■□□ 2.17
TRAF4-216ENST00000586813 SPATA31A3Q5VYP0 1347 aa28.6■■■□□ 2.17
TRAF4-216ENST00000586813 ADGRB1O14514 1584 aa28.59■■■□□ 2.17
TRAF4-216ENST00000586813 ADGRB2O60241 1585 aa28.59■■■□□ 2.17
TRAF4-216ENST00000586813 ATAD2Q6PL18 1390 aa28.59■■■□□ 2.17
TRAF4-216ENST00000586813 PRAM1Q96QH2 718 aa28.57■■■□□ 2.16
TRAF4-216ENST00000586813 ABCA3Q99758 1704 aa28.57■■■□□ 2.16
TRAF4-216ENST00000586813 TNS3Q68CZ2 1445 aa28.55■■■□□ 2.16
TRAF4-216ENST00000586813 SAFB2Q14151 953 aaKnown RBP eCLIP28.54■■■□□ 2.16
TRAF4-216ENST00000586813 KRT28Q7Z3Y7 464 aa28.54■■■□□ 2.16
TRAF4-216ENST00000586813 PHF8Q9UPP1 1060 aa28.54■■■□□ 2.16
TRAF4-216ENST00000586813 SLIT2O94813 1529 aa28.53■■■□□ 2.16
TRAF4-216ENST00000586813 EP400Q96L91 3159 aa28.52■■■□□ 2.16
TRAF4-216ENST00000586813 ANKARQ7Z5J8 1434 aa28.52■■■□□ 2.16
TRAF4-216ENST00000586813 PLCH1Q4KWH8 1693 aa28.51■■■□□ 2.15
TRAF4-216ENST00000586813 GLI3P10071 1580 aa28.5■■■□□ 2.15
TRAF4-216ENST00000586813 POGKQ9P215 609 aa28.5■■■□□ 2.15
TRAF4-216ENST00000586813 NWD2Q9ULI1 1742 aa28.49■■■□□ 2.15
TRAF4-216ENST00000586813 SBNO1A3KN83 1393 aa28.49■■■□□ 2.15
TRAF4-216ENST00000586813 PSME1Q06323 249 aa28.48■■■□□ 2.15
TRAF4-216ENST00000586813 GJD4Q96KN9 370 aaPredicted RBP28.48■■■□□ 2.15
TRAF4-216ENST00000586813 TRPM3Q9HCF6 1732 aaPredicted RBP28.47■■■□□ 2.15
TRAF4-216ENST00000586813 RALGAPBQ86X10 1494 aa28.46■■■□□ 2.15
TRAF4-216ENST00000586813 UNC5CLQ8IV45 518 aa28.46■■■□□ 2.15
TRAF4-216ENST00000586813 ARHGEF28Q8N1W1 1705 aaKnown RBP28.44■■■□□ 2.14
TRAF4-216ENST00000586813 TRAK1Q9UPV9 953 aa28.44■■■□□ 2.14
TRAF4-216ENST00000586813 ARHGEF10O15013 1369 aa28.44■■■□□ 2.14
TRAF4-216ENST00000586813 TULP4Q9NRJ4 1543 aa28.43■■■□□ 2.14
TRAF4-216ENST00000586813 BRWD3Q6RI45 1802 aa28.43■■■□□ 2.14
TRAF4-216ENST00000586813 HAP1P54257 671 aaPredicted RBP28.43■■■□□ 2.14
TRAF4-216ENST00000586813 DCAF11Q8TEB1 546 aa28.43■■■□□ 2.14
TRAF4-216ENST00000586813 KDM2AQ9Y2K7 1162 aa28.43■■■□□ 2.14
TRAF4-216ENST00000586813 ALS2Q96Q42 1657 aa28.42■■■□□ 2.14
TRAF4-216ENST00000586813 CABLES1Q8TDN4 633 aa28.42■■■□□ 2.14
TRAF4-216ENST00000586813 PMFBP1Q8TBY8 1022 aa28.41■■■□□ 2.14
TRAF4-216ENST00000586813 EIF3AQ14152 1382 aaKnown RBP28.4■■■□□ 2.14
TRAF4-216ENST00000586813 HIRIP3Q9BW71 556 aaPredicted RBP28.4■■■□□ 2.14
TRAF4-216ENST00000586813 LMOD2Q6P5Q4 547 aa28.39■■■□□ 2.14
TRAF4-216ENST00000586813 MINK1Q8N4C8 1332 aaPredicted RBP28.39■■■□□ 2.13
TRAF4-216ENST00000586813 ITSN1Q15811 1721 aa28.38■■■□□ 2.13
TRAF4-216ENST00000586813 PLEKHG5O94827 1062 aa28.38■■■□□ 2.13
TRAF4-216ENST00000586813 HRCP23327 699 aa28.38■■■□□ 2.13
TRAF4-216ENST00000586813 STAC3Q96MF2 364 aa28.38■■■□□ 2.13
TRAF4-216ENST00000586813 NRAPQ86VF7 1730 aa28.36■■■□□ 2.13
TRAF4-216ENST00000586813 PRR36Q9H6K5 1346 aa28.36■■■□□ 2.13
TRAF4-216ENST00000586813 CRYBG1Q9Y4K1 1723 aa28.35■■■□□ 2.13
TRAF4-216ENST00000586813 VPS72Q15906 364 aa28.33■■■□□ 2.13
TRAF4-216ENST00000586813 CCDC125Q86Z20 511 aa28.33■■■□□ 2.13
TRAF4-216ENST00000586813 GPRASP1Q5JY77 1395 aa28.33■■■□□ 2.13
TRAF4-216ENST00000586813 WASLO00401 505 aaPredicted RBP28.32■■■□□ 2.12
TRAF4-216ENST00000586813 KIAA1210Q9ULL0 1709 aa28.32■■■□□ 2.12
TRAF4-216ENST00000586813 COL14A1Q05707 1796 aaKnown RBP28.32■■■□□ 2.12
TRAF4-216ENST00000586813 ATP7BP35670 1465 aa28.29■■■□□ 2.12
TRAF4-216ENST00000586813 FAM83GA6ND36 823 aa28.27■■■□□ 2.12
TRAF4-216ENST00000586813 BLMP54132 1417 aaPredicted RBP28.26■■■□□ 2.12
TRAF4-216ENST00000586813 TOPAZ1Q8N9V7 1692 aa28.26■■■□□ 2.12
TRAF4-216ENST00000586813 SEPT12Q8IYM1 358 aa28.26■■■□□ 2.11
TRAF4-216ENST00000586813 CCDC9Q9Y3X0 531 aaKnown RBP28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms