RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 MINK1Q8N4C8 1332 aaPredicted RBP15.38■□□□□ 0.05
TOP3A-216ENST00000583804 HSPA5P11021 654 aaKnown RBP15.38■□□□□ 0.05
TOP3A-216ENST00000583804 LTBP4Q8N2S1 1624 aa15.37■□□□□ 0.05
TOP3A-216ENST00000583804 ARHGEF28Q8N1W1 1705 aaKnown RBP15.37■□□□□ 0.05
TOP3A-216ENST00000583804 LRRC7Q96NW7 1537 aa15.36■□□□□ 0.05
TOP3A-216ENST00000583804 ZNF316A6NFI3 1004 aaPredicted RBP15.35■□□□□ 0.05
TOP3A-216ENST00000583804 C19orf44Q9H6X5 657 aa15.33■□□□□ 0.05
TOP3A-216ENST00000583804 MSH6P52701 1360 aa15.33■□□□□ 0.04
TOP3A-216ENST00000583804 NCOA3Q9Y6Q9 1424 aa15.32■□□□□ 0.04
TOP3A-216ENST00000583804 ATF3P18847 181 aa15.32■□□□□ 0.04
TOP3A-216ENST00000583804 CERKQ8TCT0 537 aa15.32■□□□□ 0.04
TOP3A-216ENST00000583804 TESK2Q96S53 571 aa15.32■□□□□ 0.04
TOP3A-216ENST00000583804 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.31■□□□□ 0.04
TOP3A-216ENST00000583804 ADGRL3Q9HAR2 1447 aa15.31■□□□□ 0.04
TOP3A-216ENST00000583804 QRICH2Q9H0J4 1663 aa15.3■□□□□ 0.04
TOP3A-216ENST00000583804 NUTM2FA1L443 756 aa15.3■□□□□ 0.04
TOP3A-216ENST00000583804 WASLO00401 505 aaPredicted RBP15.3■□□□□ 0.04
TOP3A-216ENST00000583804 SLC24A1O60721 1099 aa15.3■□□□□ 0.04
TOP3A-216ENST00000583804 CDK19Q9BWU1 502 aa15.3■□□□□ 0.04
TOP3A-216ENST00000583804 EVC2Q86UK5 1308 aa15.3■□□□□ 0.04
TOP3A-216ENST00000583804 SRPK2P78362 688 aaKnown RBP15.29■□□□□ 0.04
TOP3A-216ENST00000583804 TMF1P82094 1093 aa15.29■□□□□ 0.04
TOP3A-216ENST00000583804 CADPS2Q86UW7 1296 aa15.28■□□□□ 0.04
TOP3A-216ENST00000583804 POLR3GLQ9BT43 218 aa15.28■□□□□ 0.04
TOP3A-216ENST00000583804 SBNO2Q9Y2G9 1366 aa15.28■□□□□ 0.04
TOP3A-216ENST00000583804 NALCNQ8IZF0 1738 aa15.28■□□□□ 0.04
TOP3A-216ENST00000583804 CABP2Q9NPB3 220 aa15.27■□□□□ 0.04
TOP3A-216ENST00000583804 XIRP1Q702N8 1843 aaKnown RBP15.27■□□□□ 0.04
TOP3A-216ENST00000583804 DISP3Q9P2K9 1392 aa15.25■□□□□ 0.03
TOP3A-216ENST00000583804 CDCA8Q53HL2 280 aa15.24■□□□□ 0.03
TOP3A-216ENST00000583804 NUDT16Q96DE0 195 aaKnown RBP15.24■□□□□ 0.03
TOP3A-216ENST00000583804 TULP4Q9NRJ4 1543 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 ADGRB2O60241 1585 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 CDC42BPGQ6DT37 1551 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 C11orf95C9JLR9 678 aaPredicted RBP15.23■□□□□ 0.03
TOP3A-216ENST00000583804 UBAP1LF5GYI3 381 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 TOM1O60784 492 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 SLAIN2Q9P270 581 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 DCCP43146 1447 aa15.23■□□□□ 0.03
TOP3A-216ENST00000583804 ESCO1Q5FWF5 840 aa15.21■□□□□ 0.03
TOP3A-216ENST00000583804 TMC1Q8TDI8 760 aa15.21■□□□□ 0.03
TOP3A-216ENST00000583804 IQSEC2Q5JU85 1478 aa15.21■□□□□ 0.02
TOP3A-216ENST00000583804 PRR36Q9H6K5 1346 aa15.21■□□□□ 0.02
TOP3A-216ENST00000583804 CCDC61Q9Y6R9 512 aa15.2■□□□□ 0.02
TOP3A-216ENST00000583804 SCAF1Q9H7N4 1312 aaKnown RBP15.2■□□□□ 0.02
TOP3A-216ENST00000583804 PUS7Q96PZ0 661 aaKnown RBP15.2■□□□□ 0.02
TOP3A-216ENST00000583804 ORAI2Q96SN7 254 aa15.2■□□□□ 0.02
TOP3A-216ENST00000583804 FMN2Q9NZ56 1722 aa15.19■□□□□ 0.02
TOP3A-216ENST00000583804 MST1RQ04912 1400 aa15.19■□□□□ 0.02
TOP3A-216ENST00000583804 PIP4K2BP78356 416 aa15.19■□□□□ 0.02
TOP3A-216ENST00000583804 PMFBP1Q8TBY8 1022 aa15.19■□□□□ 0.02
TOP3A-216ENST00000583804 CABP1Q9NZU7 370 aa15.19■□□□□ 0.02
TOP3A-216ENST00000583804 C1orf167Q5SNV9 1468 aa15.18■□□□□ 0.02
TOP3A-216ENST00000583804 ANKARQ7Z5J8 1434 aa15.18■□□□□ 0.02
TOP3A-216ENST00000583804 ATAD2Q6PL18 1390 aa15.18■□□□□ 0.02
TOP3A-216ENST00000583804 KIF7Q2M1P5 1343 aa15.18■□□□□ 0.02
TOP3A-216ENST00000583804 WASHC2AQ641Q2 1341 aa15.18■□□□□ 0.02
TOP3A-216ENST00000583804 PHF8Q9UPP1 1060 aa15.17■□□□□ 0.02
TOP3A-216ENST00000583804 ATP7BP35670 1465 aa15.17■□□□□ 0.02
TOP3A-216ENST00000583804 DDX10Q13206 875 aaKnown RBP15.16■□□□□ 0.02
TOP3A-216ENST00000583804 SLC12A5Q9H2X9 1139 aa15.16■□□□□ 0.02
TOP3A-216ENST00000583804 PPIP5K1Q6PFW1 1433 aa15.16■□□□□ 0.02
TOP3A-216ENST00000583804 CCDC7Q96M83 1385 aa15.16■□□□□ 0.02
TOP3A-216ENST00000583804 NGDNQ8NEJ9 315 aaKnown RBP15.15■□□□□ 0.02
TOP3A-216ENST00000583804 USP32Q8NFA0 1604 aa15.15■□□□□ 0.02
TOP3A-216ENST00000583804 BRINP3Q76B58 766 aa15.14■□□□□ 0.01
TOP3A-216ENST00000583804 RGPD8O14715 1765 aaPredicted RBP15.14■□□□□ 0.01
TOP3A-216ENST00000583804 PLEKHG3A1L390 1219 aa15.14■□□□□ 0.01
TOP3A-216ENST00000583804 FOXO3O43524 673 aa15.14■□□□□ 0.01
TOP3A-216ENST00000583804 DIEXFQ68CQ4 756 aaKnown RBP15.13■□□□□ 0.01
TOP3A-216ENST00000583804 ACEP12821 1306 aa15.12■□□□□ 0.01
TOP3A-216ENST00000583804 PSME1Q06323 249 aa15.12■□□□□ 0.01
TOP3A-216ENST00000583804 HDGFL2Q7Z4V5 671 aaPredicted RBP15.11■□□□□ 0.01
TOP3A-216ENST00000583804 DDX17Q92841 729 aaKnown RBP15.11■□□□□ 0.01
TOP3A-216ENST00000583804 TERF2IPQ9NYB0 399 aa15.11■□□□□ 0.01
TOP3A-216ENST00000583804 XPCQ01831 940 aaPredicted RBP15.1■□□□□ 0.01
TOP3A-216ENST00000583804 NINLQ9Y2I6 1382 aa15.1■□□□□ 0.01
TOP3A-216ENST00000583804 ITSN1Q15811 1721 aa15.1■□□□□ 0.01
TOP3A-216ENST00000583804 CNGB1Q14028 1251 aaPredicted RBP15.09■□□□□ 0.01
TOP3A-216ENST00000583804 TOPAZ1Q8N9V7 1692 aa15.09■□□□□ 0.01
TOP3A-216ENST00000583804 KRT28Q7Z3Y7 464 aa15.08■□□□□ 0.01
TOP3A-216ENST00000583804 ZNF692Q9BU19 519 aaPredicted RBP15.08■□□□□ 0.01
TOP3A-216ENST00000583804 PANK3Q9H999 370 aa15.08■□□□□ 0.01
TOP3A-216ENST00000583804 ROBO1Q9Y6N7 1651 aa15.08■□□□□ 0
TOP3A-216ENST00000583804 NPHP3Q7Z494 1330 aa15.08■□□□□ 0
TOP3A-216ENST00000583804 POLR3AO14802 1390 aaPredicted RBP15.07■□□□□ 0
TOP3A-216ENST00000583804 KTN1Q86UP2 1357 aaKnown RBP15.07■□□□□ 0
TOP3A-216ENST00000583804 KIF1AQ12756 1690 aa15.07■□□□□ 0
TOP3A-216ENST00000583804 PAK3O75914 559 aaPredicted RBP15.07■□□□□ 0
TOP3A-216ENST00000583804 A0A1W2PP64 1363 aa15.06■□□□□ 0
TOP3A-216ENST00000583804 ANKRD36BQ8N2N9 1353 aa15.06■□□□□ 0
TOP3A-216ENST00000583804 CD163L1Q9NR16 1453 aa15.05■□□□□ -0
TOP3A-216ENST00000583804 CPSF1Q10570 1443 aaKnown RBP15.04■□□□□ -0
TOP3A-216ENST00000583804 MYOM1P52179 1685 aa15.04■□□□□ -0
TOP3A-216ENST00000583804 LMOD2Q6P5Q4 547 aa15.04■□□□□ -0
TOP3A-216ENST00000583804 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -0
TOP3A-216ENST00000583804 CARD14Q9BXL6 1004 aa15.04■□□□□ -0
TOP3A-216ENST00000583804 USP6P35125 1406 aa15.03■□□□□ -0
TOP3A-216ENST00000583804 SOS2Q07890 1332 aaPredicted RBP15.02■□□□□ -0
TOP3A-216ENST00000583804 KNSTRNQ9Y448 316 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms