RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	ERVK-7	P63135	1459 aa		12.14	□□□□□ -0.47
PPP4R1-222	ENST00000582594	MAP3K4	Q9Y6R4	1608 aa		12.14	□□□□□ -0.47
PPP4R1-222	ENST00000582594	TRAK2	O60296	914 aa		12.14	□□□□□ -0.47
PPP4R1-222	ENST00000582594	CLTCL1	P53675	1640 aa		12.14	□□□□□ -0.47
PPP4R1-222	ENST00000582594	SCAPER	Q9BY12	1400 aa		12.14	□□□□□ -0.47
PPP4R1-222	ENST00000582594	PNN	Q9H307	717 aa	Known RBP	12.13	□□□□□ -0.47
PPP4R1-222	ENST00000582594	ADGRF5	Q8IZF2	1346 aa		12.13	□□□□□ -0.47
PPP4R1-222	ENST00000582594	FSD2	A1L4K1	749 aa		12.13	□□□□□ -0.47
PPP4R1-222	ENST00000582594	NGEF	Q8N5V2	710 aa		12.13	□□□□□ -0.47
PPP4R1-222	ENST00000582594	FTSJ3	Q8IY81	847 aa	Known RBP	12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	CHMP5	Q9NZZ3	219 aa		12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	TRAPPC8	Q9Y2L5	1435 aa		12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	POLR3A	O14802	1390 aa	Predicted RBP	12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	AFAP1	Q8N556	730 aa		12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	NSD3	Q9BZ95	1437 aa		12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	SLC12A5	Q9H2X9	1139 aa		12.12	□□□□□ -0.47
PPP4R1-222	ENST00000582594	MVP	Q14764	893 aa	Known RBP	12.11	□□□□□ -0.47
PPP4R1-222	ENST00000582594	TSR2	Q969E8	191 aa	Known RBP	12.11	□□□□□ -0.47
PPP4R1-222	ENST00000582594	PPRC1	Q5VV67	1664 aa	Known RBP	12.11	□□□□□ -0.47
PPP4R1-222	ENST00000582594	TRPM2	O94759	1503 aa		12.1	□□□□□ -0.47
PPP4R1-222	ENST00000582594	MTHFS	P49914	203 aa		12.1	□□□□□ -0.47
PPP4R1-222	ENST00000582594	SPAG9	O60271	1321 aa	Known RBP	12.1	□□□□□ -0.47
PPP4R1-222	ENST00000582594	SHPRH	Q149N8	1683 aa		12.1	□□□□□ -0.47
PPP4R1-222	ENST00000582594	EFCAB2	Q5VUJ9	269 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	TRAK1	Q9UPV9	953 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	UGGT1	Q9NYU2	1555 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	CHGA	P10645	457 aa	Known RBP	12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	ZKSCAN2	Q63HK3	967 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	WDR63	Q8IWG1	891 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	HSCB	Q8IWL3	235 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	DZIP1L	Q8IYY4	767 aa	Known RBP	12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	ITPRIP	Q8IWB1	547 aa		12.09	□□□□□ -0.47
PPP4R1-222	ENST00000582594	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.08	□□□□□ -0.48
PPP4R1-222	ENST00000582594	CLCN1	P35523	988 aa		12.08	□□□□□ -0.48
PPP4R1-222	ENST00000582594	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
PPP4R1-222	ENST00000582594	SMC4	Q9NTJ3	1288 aa		12.08	□□□□□ -0.48
PPP4R1-222	ENST00000582594	FOXD4L1	Q9NU39	408 aa		12.08	□□□□□ -0.48
PPP4R1-222	ENST00000582594	AAMP	Q13685	434 aa		12.07	□□□□□ -0.48
PPP4R1-222	ENST00000582594	MYH16	Q9H6N6	1097 aa		12.07	□□□□□ -0.48
PPP4R1-222	ENST00000582594	GRPEL1	Q9HAV7	217 aa		12.07	□□□□□ -0.48
PPP4R1-222	ENST00000582594	MRE11	P49959	708 aa		12.07	□□□□□ -0.48
PPP4R1-222	ENST00000582594	IQSEC2	Q5JU85	1478 aa		12.07	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ABCA6	Q8N139	1617 aa		12.07	□□□□□ -0.48
PPP4R1-222	ENST00000582594	KIF3B	O15066	747 aa		12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	PHF23	Q9BUL5	403 aa	Predicted RBP	12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	PTPRT	O14522	1441 aa		12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ERCC6L2	Q5T890	1561 aa		12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	EXOSC9	Q06265	439 aa	Known RBP	12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	STAC3	Q96MF2	364 aa		12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	HSP90AA1	P07900	732 aa	Known RBP	12.06	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ERBB4	Q15303	1308 aa		12.05	□□□□□ -0.48
PPP4R1-222	ENST00000582594	TRIM27	P14373	513 aa		12.05	□□□□□ -0.48
PPP4R1-222	ENST00000582594	CFAP53	Q96M91	514 aa		12.05	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ZNF692	Q9BU19	519 aa	Predicted RBP	12.05	□□□□□ -0.48
PPP4R1-222	ENST00000582594	PLCH2	O75038	1416 aa		12.05	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ZMYM3	Q14202	1370 aa		12.05	□□□□□ -0.48
PPP4R1-222	ENST00000582594	TMEM132E	Q6IEE7	984 aa		12.04	□□□□□ -0.48
PPP4R1-222	ENST00000582594	DDX11L8	A8MPP1	907 aa		12.04	□□□□□ -0.48
PPP4R1-222	ENST00000582594	SSH1	Q8WYL5	1049 aa		12.04	□□□□□ -0.48
PPP4R1-222	ENST00000582594	SENP3	Q9H4L4	574 aa	Predicted RBP	12.04	□□□□□ -0.48
PPP4R1-222	ENST00000582594	U2SURP	O15042	1029 aa	Known RBP	12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	HSP90AB1	P08238	724 aa	Known RBP	12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	GAS2L3	Q86XJ1	694 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	TNPO1	Q92973	898 aa	Known RBP	12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	LNPK	Q9C0E8	428 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	NOB1	Q9ULX3	412 aa	Known RBP	12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ESPN	B1AK53	854 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	VSIG10	Q8N0Z9	540 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	KANK1	Q14678	1352 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	ABCC1	P33527	1531 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	SLC24A1	O60721	1099 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	TMEM57	Q8N5G2	664 aa		12.03	□□□□□ -0.48
PPP4R1-222	ENST00000582594	KIAA1210	Q9ULL0	1709 aa		12.02	□□□□□ -0.48
PPP4R1-222	ENST00000582594	CCDC27	Q2M243	656 aa		12.02	□□□□□ -0.49
PPP4R1-222	ENST00000582594	TRIM44	Q96DX7	344 aa	Predicted RBP	12.02	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ZNF518A	Q6AHZ1	1483 aa		12.01	□□□□□ -0.49
PPP4R1-222	ENST00000582594	DDX19B	Q9UMR2	479 aa		12.01	□□□□□ -0.49
PPP4R1-222	ENST00000582594	HDAC1	Q13547	482 aa	Predicted RBP	12.01	□□□□□ -0.49
PPP4R1-222	ENST00000582594	GLIPR1L2	Q4G1C9	344 aa		12.01	□□□□□ -0.49
PPP4R1-222	ENST00000582594	TET3	O43151	1660 aa		12.01	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ATF7IP	Q6VMQ6	1270 aa		12	□□□□□ -0.49
PPP4R1-222	ENST00000582594	NUTM2D	Q5VT03	806 aa	Predicted RBP	12	□□□□□ -0.49
PPP4R1-222	ENST00000582594	NOS1	P29475	1434 aa		12	□□□□□ -0.49
PPP4R1-222	ENST00000582594	SAFB2	Q14151	953 aa	Known RBP eCLIP	12	□□□□□ -0.49
PPP4R1-222	ENST00000582594	SMC5	Q8IY18	1101 aa		12	□□□□□ -0.49
PPP4R1-222	ENST00000582594	CD2BP2	O95400	341 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-222	ENST00000582594	DDIT3	P35638	169 aa		11.99	□□□□□ -0.49
PPP4R1-222	ENST00000582594	RBM42	Q9BTD8	480 aa	Known RBP	11.99	□□□□□ -0.49
PPP4R1-222	ENST00000582594	CFAP74	Q9C0B2	1584 aa		11.99	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ZFYVE16	Q7Z3T8	1539 aa		11.99	□□□□□ -0.49
PPP4R1-222	ENST00000582594	PKNOX2	Q96KN3	472 aa		11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	MROH2A	A6NES4	1674 aa		11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ARAP3	Q8WWN8	1544 aa		11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	CFAP65	Q6ZU64	1925 aa	Known RBP	11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	MYOM2	P54296	1465 aa		11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	KIF1B	O60333	1816 aa		11.98	□□□□□ -0.49
PPP4R1-222	ENST00000582594	TMPO	P42166	694 aa	Known RBP	11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms