RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 NPC1L1Q9UHC9 1359 aa30.53■■■□□ 2.48
CCDC47-204ENST00000582252 ANKLE2Q86XL3 938 aa30.52■■■□□ 2.48
CCDC47-204ENST00000582252 TRAK1Q9UPV9 953 aa30.52■■■□□ 2.48
CCDC47-204ENST00000582252 FKBP8Q14318 412 aa30.51■■■□□ 2.47
CCDC47-204ENST00000582252 PELP1Q8IZL8 1130 aaKnown RBP30.51■■■□□ 2.47
CCDC47-204ENST00000582252 MED14O60244 1454 aa30.51■■■□□ 2.47
CCDC47-204ENST00000582252 KNDC1Q76NI1 1749 aa30.5■■■□□ 2.47
CCDC47-204ENST00000582252 INSRP06213 1382 aa30.48■■■□□ 2.47
CCDC47-204ENST00000582252 DLC1Q96QB1 1528 aa30.47■■■□□ 2.47
CCDC47-204ENST00000582252 METP08581 1390 aa30.46■■■□□ 2.47
CCDC47-204ENST00000582252 AMER1Q5JTC6 1135 aaPredicted RBP30.44■■■□□ 2.46
CCDC47-204ENST00000582252 STK26Q9P289 416 aa30.44■■■□□ 2.46
CCDC47-204ENST00000582252 ABCC11Q96J66 1382 aa30.43■■■□□ 2.46
CCDC47-204ENST00000582252 PUS7Q96PZ0 661 aaKnown RBP30.43■■■□□ 2.46
CCDC47-204ENST00000582252 TBX22Q9Y458 520 aa30.43■■■□□ 2.46
CCDC47-204ENST00000582252 TECPR2O15040 1411 aa30.41■■■□□ 2.46
CCDC47-204ENST00000582252 SLC26A8Q96RN1 970 aa30.4■■■□□ 2.46
CCDC47-204ENST00000582252 SMG6Q86US8 1419 aaKnown RBP30.39■■■□□ 2.46
CCDC47-204ENST00000582252 CPS1P31327 1500 aa30.39■■■□□ 2.46
CCDC47-204ENST00000582252 LMTK3Q96Q04 1460 aa30.39■■■□□ 2.45
CCDC47-204ENST00000582252 EVC2Q86UK5 1308 aa30.38■■■□□ 2.45
CCDC47-204ENST00000582252 NPHP4O75161 1426 aaPredicted RBP30.37■■■□□ 2.45
CCDC47-204ENST00000582252 PIK3R4Q99570 1358 aa30.36■■■□□ 2.45
CCDC47-204ENST00000582252 FAM135BQ49AJ0 1406 aa30.34■■■□□ 2.45
CCDC47-204ENST00000582252 PPP2R1AP30153 589 aa30.33■■■□□ 2.45
CCDC47-204ENST00000582252 POGKQ9P215 609 aa30.33■■■□□ 2.45
CCDC47-204ENST00000582252 SIRT1Q96EB6 747 aa30.33■■■□□ 2.45
CCDC47-204ENST00000582252 PRAM1Q96QH2 718 aa30.33■■■□□ 2.45
CCDC47-204ENST00000582252 NUDCQ9Y266 331 aa30.32■■■□□ 2.44
CCDC47-204ENST00000582252 XRN1Q8IZH2 1706 aaKnown RBP30.32■■■□□ 2.44
CCDC47-204ENST00000582252 ERICH6BQ5W0A0 696 aa30.31■■■□□ 2.44
CCDC47-204ENST00000582252 CHD2O14647 1828 aaKnown RBP30.31■■■□□ 2.44
CCDC47-204ENST00000582252 USP32Q8NFA0 1604 aa30.31■■■□□ 2.44
CCDC47-204ENST00000582252 TULP4Q9NRJ4 1543 aa30.3■■■□□ 2.44
CCDC47-204ENST00000582252 BLMP54132 1417 aaPredicted RBP30.3■■■□□ 2.44
CCDC47-204ENST00000582252 PTPRUQ92729 1446 aa30.3■■■□□ 2.44
CCDC47-204ENST00000582252 NCKAP5LQ9HCH0 1330 aa30.3■■■□□ 2.44
CCDC47-204ENST00000582252 PTCH1Q13635 1447 aa30.27■■■□□ 2.44
CCDC47-204ENST00000582252 NINLQ9Y2I6 1382 aa30.27■■■□□ 2.44
CCDC47-204ENST00000582252 SAFB2Q14151 953 aaKnown RBP eCLIP30.26■■■□□ 2.43
CCDC47-204ENST00000582252 HSPA2P54652 639 aa30.25■■■□□ 2.43
CCDC47-204ENST00000582252 CARD14Q9BXL6 1004 aa30.25■■■□□ 2.43
CCDC47-204ENST00000582252 AMOTL2Q9Y2J4 779 aa30.25■■■□□ 2.43
CCDC47-204ENST00000582252 PDE3BQ13370 1112 aa30.24■■■□□ 2.43
CCDC47-204ENST00000582252 ROBO2Q9HCK4 1378 aa30.23■■■□□ 2.43
CCDC47-204ENST00000582252 NSD3Q9BZ95 1437 aa30.23■■■□□ 2.43
CCDC47-204ENST00000582252 PLEKHH1Q9ULM0 1364 aa30.23■■■□□ 2.43
CCDC47-204ENST00000582252 WDR43Q15061 677 aaKnown RBP eCLIP30.22■■■□□ 2.43
CCDC47-204ENST00000582252 WAPLQ7Z5K2 1190 aa30.22■■■□□ 2.43
CCDC47-204ENST00000582252 STRCQ7RTU9 1775 aa30.21■■■□□ 2.43
CCDC47-204ENST00000582252 MINK1Q8N4C8 1332 aaPredicted RBP30.2■■■□□ 2.42
CCDC47-204ENST00000582252 ANKRD36BQ8N2N9 1353 aa30.2■■■□□ 2.42
CCDC47-204ENST00000582252 SLC12A5Q9H2X9 1139 aa30.19■■■□□ 2.42
CCDC47-204ENST00000582252 ATAD2Q6PL18 1390 aa30.18■■■□□ 2.42
CCDC47-204ENST00000582252 ADGRB2O60241 1585 aa30.16■■■□□ 2.42
CCDC47-204ENST00000582252 NWD1Q149M9 1564 aa30.16■■■□□ 2.42
CCDC47-204ENST00000582252 NSD2O96028 1365 aa30.16■■■□□ 2.42
CCDC47-204ENST00000582252 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.15■■■□□ 2.42
CCDC47-204ENST00000582252 CGNL1Q0VF96 1302 aa30.15■■■□□ 2.42
CCDC47-204ENST00000582252 KCNA6P17658 529 aa30.13■■■□□ 2.41
CCDC47-204ENST00000582252 SRPK2P78362 688 aaKnown RBP30.12■■■□□ 2.41
CCDC47-204ENST00000582252 CABP2Q9NPB3 220 aa30.11■■■□□ 2.41
CCDC47-204ENST00000582252 ADAMTS8Q9UP79 889 aa30.11■■■□□ 2.41
CCDC47-204ENST00000582252 MORC1Q86VD1 984 aa30.1■■■□□ 2.41
CCDC47-204ENST00000582252 POLR3AO14802 1390 aaPredicted RBP30.08■■■□□ 2.41
CCDC47-204ENST00000582252 CDK19Q9BWU1 502 aa30.07■■■□□ 2.4
CCDC47-204ENST00000582252 RNF123Q5XPI4 1314 aa30.06■■■□□ 2.4
CCDC47-204ENST00000582252 NKTRP30414 1462 aaKnown RBP30.05■■■□□ 2.4
CCDC47-204ENST00000582252 WASLO00401 505 aaPredicted RBP30.05■■■□□ 2.4
CCDC47-204ENST00000582252 IRX6P78412 446 aaPredicted RBP30.05■■■□□ 2.4
CCDC47-204ENST00000582252 TERF2IPQ9NYB0 399 aa30.05■■■□□ 2.4
CCDC47-204ENST00000582252 PPP4R2Q9NY27 417 aa30.04■■■□□ 2.4
CCDC47-204ENST00000582252 SENP3-EIF4A1A0A087X0R7 540 aa30.03■■■□□ 2.4
CCDC47-204ENST00000582252 SALL2Q9Y467 1007 aaPredicted RBP30.02■■■□□ 2.4
CCDC47-204ENST00000582252 NALCNQ8IZF0 1738 aa30.01■■■□□ 2.4
CCDC47-204ENST00000582252 A0A1W2PP64 1363 aa30.01■■■□□ 2.39
CCDC47-204ENST00000582252 ANKRD26Q9UPS8 1709 aa30■■■□□ 2.39
CCDC47-204ENST00000582252 STRCP1A6NGW2 1772 aa30■■■□□ 2.39
CCDC47-204ENST00000582252 HDGFL2Q7Z4V5 671 aaPredicted RBP29.98■■■□□ 2.39
CCDC47-204ENST00000582252 NGEFQ8N5V2 710 aa29.97■■■□□ 2.39
CCDC47-204ENST00000582252 CDC42BPGQ6DT37 1551 aa29.97■■■□□ 2.39
CCDC47-204ENST00000582252 CFAP53Q96M91 514 aa29.96■■■□□ 2.39
CCDC47-204ENST00000582252 ATP7BP35670 1465 aa29.95■■■□□ 2.39
CCDC47-204ENST00000582252 ADGRL3Q9HAR2 1447 aa29.94■■■□□ 2.38
CCDC47-204ENST00000582252 ITSN1Q15811 1721 aa29.94■■■□□ 2.38
CCDC47-204ENST00000582252 DMRT2Q9Y5R5 561 aa29.94■■■□□ 2.38
CCDC47-204ENST00000582252 FMN2Q9NZ56 1722 aa29.94■■■□□ 2.38
CCDC47-204ENST00000582252 TOPAZ1Q8N9V7 1692 aa29.94■■■□□ 2.38
CCDC47-204ENST00000582252 SHPRHQ149N8 1683 aa29.93■■■□□ 2.38
CCDC47-204ENST00000582252 RCAN3Q9UKA8 241 aa29.92■■■□□ 2.38
CCDC47-204ENST00000582252 KIF20BQ96Q89 1820 aa29.91■■■□□ 2.38
CCDC47-204ENST00000582252 CD163L1Q9NR16 1453 aa29.91■■■□□ 2.38
CCDC47-204ENST00000582252 NUDT16Q96DE0 195 aaKnown RBP29.91■■■□□ 2.38
CCDC47-204ENST00000582252 PROSER2Q86WR7 435 aaPredicted RBP29.9■■■□□ 2.38
CCDC47-204ENST00000582252 CCDC61Q9Y6R9 512 aa29.9■■■□□ 2.38
CCDC47-204ENST00000582252 PPIP5K1Q6PFW1 1433 aa29.89■■■□□ 2.37
CCDC47-204ENST00000582252 RGPD8O14715 1765 aaPredicted RBP29.88■■■□□ 2.37
CCDC47-204ENST00000582252 ANKARQ7Z5J8 1434 aa29.87■■■□□ 2.37
CCDC47-204ENST00000582252 TNNT2P45379 298 aaPredicted RBP29.87■■■□□ 2.37
CCDC47-204ENST00000582252 NCOA3Q9Y6Q9 1424 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms