RNA–Protein interactions for RNA: ENST00000576334.1

LITAF-219, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 556 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-219ENST00000576334 TECPR2O15040 1411 aa17.5■□□□□ 0.39
LITAF-219ENST00000576334 YTHDC2Q9H6S0 1430 aaKnown RBP17.5■□□□□ 0.39
LITAF-219ENST00000576334 KDM2AQ9Y2K7 1162 aa17.5■□□□□ 0.39
LITAF-219ENST00000576334 MYOM2P54296 1465 aa17.5■□□□□ 0.39
LITAF-219ENST00000576334 KNDC1Q76NI1 1749 aa17.5■□□□□ 0.39
LITAF-219ENST00000576334 ABCC11Q96J66 1382 aa17.49■□□□□ 0.39
LITAF-219ENST00000576334 HRCP23327 699 aa17.48■□□□□ 0.39
LITAF-219ENST00000576334 SPATA31A6Q5VVP1 1343 aa17.47■□□□□ 0.39
LITAF-219ENST00000576334 SAFB2Q14151 953 aaKnown RBP eCLIP17.47■□□□□ 0.39
LITAF-219ENST00000576334 CDC42BPGQ6DT37 1551 aa17.46■□□□□ 0.39
LITAF-219ENST00000576334 MEX3CQ5U5Q3 659 aaKnown RBP17.46■□□□□ 0.39
LITAF-219ENST00000576334 DCAF11Q8TEB1 546 aa17.46■□□□□ 0.39
LITAF-219ENST00000576334 DHX57Q6P158 1386 aaKnown RBP17.45■□□□□ 0.38
LITAF-219ENST00000576334 PNPLA6Q8IY17 1366 aa17.45■□□□□ 0.38
LITAF-219ENST00000576334 XPCQ01831 940 aaPredicted RBP17.45■□□□□ 0.38
LITAF-219ENST00000576334 ESCO1Q5FWF5 840 aa17.45■□□□□ 0.38
LITAF-219ENST00000576334 LRRC59Q96AG4 307 aaKnown RBP17.45■□□□□ 0.38
LITAF-219ENST00000576334 LAMC1P11047 1609 aa17.44■□□□□ 0.38
LITAF-219ENST00000576334 ADGRB1O14514 1584 aa17.42■□□□□ 0.38
LITAF-219ENST00000576334 PRAM1Q96QH2 718 aa17.42■□□□□ 0.38
LITAF-219ENST00000576334 RGPD8O14715 1765 aaPredicted RBP17.42■□□□□ 0.38
LITAF-219ENST00000576334 SOS2Q07890 1332 aaPredicted RBP17.42■□□□□ 0.38
LITAF-219ENST00000576334 FMN2Q9NZ56 1722 aa17.41■□□□□ 0.38
LITAF-219ENST00000576334 FOXO3O43524 673 aa17.41■□□□□ 0.38
LITAF-219ENST00000576334 TRAK1Q9UPV9 953 aa17.41■□□□□ 0.38
LITAF-219ENST00000576334 ADAMTS2O95450 1211 aa17.38■□□□□ 0.37
LITAF-219ENST00000576334 SIRT1Q96EB6 747 aa17.38■□□□□ 0.37
LITAF-219ENST00000576334 C8orf37Q96NL8 207 aa17.38■□□□□ 0.37
LITAF-219ENST00000576334 PXDNQ92626 1479 aa17.37■□□□□ 0.37
LITAF-219ENST00000576334 HIRIP3Q9BW71 556 aaPredicted RBP17.37■□□□□ 0.37
LITAF-219ENST00000576334 AFF2P51816 1311 aa17.37■□□□□ 0.37
LITAF-219ENST00000576334 POGKQ9P215 609 aa17.36■□□□□ 0.37
LITAF-219ENST00000576334 DLC1Q96QB1 1528 aa17.36■□□□□ 0.37
LITAF-219ENST00000576334 NPHP3Q7Z494 1330 aa17.35■□□□□ 0.37
LITAF-219ENST00000576334 MINK1Q8N4C8 1332 aaPredicted RBP17.34■□□□□ 0.37
LITAF-219ENST00000576334 USP32Q8NFA0 1604 aa17.34■□□□□ 0.37
LITAF-219ENST00000576334 ZNF772Q68DY9 489 aaPredicted RBP17.33■□□□□ 0.36
LITAF-219ENST00000576334 SIN3AQ96ST3 1273 aa17.32■□□□□ 0.36
LITAF-219ENST00000576334 COL22A1Q8NFW1 1626 aaPredicted RBP17.32■□□□□ 0.36
LITAF-219ENST00000576334 PLEKHG5O94827 1062 aa17.31■□□□□ 0.36
LITAF-219ENST00000576334 NBPF1Q3BBV0 1214 aa17.31■□□□□ 0.36
LITAF-219ENST00000576334 PMFBP1Q8TBY8 1022 aa17.31■□□□□ 0.36
LITAF-219ENST00000576334 PHF8Q9UPP1 1060 aa17.31■□□□□ 0.36
LITAF-219ENST00000576334 ARHGEF28Q8N1W1 1705 aaKnown RBP17.3■□□□□ 0.36
LITAF-219ENST00000576334 KRT28Q7Z3Y7 464 aa17.3■□□□□ 0.36
LITAF-219ENST00000576334 NGLY1Q96IV0 654 aa17.3■□□□□ 0.36
LITAF-219ENST00000576334 KIF1AQ12756 1690 aa17.29■□□□□ 0.36
LITAF-219ENST00000576334 PRR36Q9H6K5 1346 aa17.29■□□□□ 0.36
LITAF-219ENST00000576334 ADGRB2O60241 1585 aa17.28■□□□□ 0.36
LITAF-219ENST00000576334 SPATA31A3Q5VYP0 1347 aa17.27■□□□□ 0.36
LITAF-219ENST00000576334 RXRBP28702 533 aa17.27■□□□□ 0.36
LITAF-219ENST00000576334 STAC3Q96MF2 364 aa17.27■□□□□ 0.36
LITAF-219ENST00000576334 QTRT2Q9H974 415 aaKnown RBP17.27■□□□□ 0.36
LITAF-219ENST00000576334 NEUROD1Q13562 356 aa17.26■□□□□ 0.35
LITAF-219ENST00000576334 WASLO00401 505 aaPredicted RBP17.25■□□□□ 0.35
LITAF-219ENST00000576334 CABLES1Q8TDN4 633 aa17.25■□□□□ 0.35
LITAF-219ENST00000576334 L3MBTL2Q969R5 705 aa17.25■□□□□ 0.35
LITAF-219ENST00000576334 MARF1Q9Y4F3 1742 aaKnown RBP17.24■□□□□ 0.35
LITAF-219ENST00000576334 USP21Q9UK80 565 aa17.24■□□□□ 0.35
LITAF-219ENST00000576334 KIAA1210Q9ULL0 1709 aa17.24■□□□□ 0.35
LITAF-219ENST00000576334 ANKARQ7Z5J8 1434 aa17.23■□□□□ 0.35
LITAF-219ENST00000576334 PSME1Q06323 249 aa17.23■□□□□ 0.35
LITAF-219ENST00000576334 LMOD2Q6P5Q4 547 aa17.23■□□□□ 0.35
LITAF-219ENST00000576334 TULP4Q9NRJ4 1543 aa17.22■□□□□ 0.35
LITAF-219ENST00000576334 RGS12O14924 1447 aa17.21■□□□□ 0.35
LITAF-219ENST00000576334 TNS3Q68CZ2 1445 aa17.21■□□□□ 0.35
LITAF-219ENST00000576334 FNBP4Q8N3X1 1017 aaPredicted RBP17.21■□□□□ 0.35
LITAF-219ENST00000576334 BCL9LQ86UU0 1499 aa17.2■□□□□ 0.34
LITAF-219ENST00000576334 TRPM3Q9HCF6 1732 aaPredicted RBP17.2■□□□□ 0.34
LITAF-219ENST00000576334 RBM6P78332 1123 aaKnown RBP17.19■□□□□ 0.34
LITAF-219ENST00000576334 CDK19Q9BWU1 502 aa17.19■□□□□ 0.34
LITAF-219ENST00000576334 ABCA3Q99758 1704 aa17.18■□□□□ 0.34
LITAF-219ENST00000576334 ATP7BP35670 1465 aa17.18■□□□□ 0.34
LITAF-219ENST00000576334 SBNO1A3KN83 1393 aa17.18■□□□□ 0.34
LITAF-219ENST00000576334 NUDT16Q96DE0 195 aaKnown RBP17.18■□□□□ 0.34
LITAF-219ENST00000576334 ATRNO75882 1429 aa17.17■□□□□ 0.34
LITAF-219ENST00000576334 UPF1Q92900 1129 aaKnown RBP eCLIP17.17■□□□□ 0.34
LITAF-219ENST00000576334 CDK12Q9NYV4 1490 aaPredicted RBP17.17■□□□□ 0.34
LITAF-219ENST00000576334 NGDNQ8NEJ9 315 aaKnown RBP17.16■□□□□ 0.34
LITAF-219ENST00000576334 TRPC5Q9UL62 973 aaPredicted RBP17.16■□□□□ 0.34
LITAF-219ENST00000576334 ALS2Q96Q42 1657 aa17.16■□□□□ 0.34
LITAF-219ENST00000576334 TRPM1Q7Z4N2 1603 aa17.15■□□□□ 0.34
LITAF-219ENST00000576334 HAP1P54257 671 aaPredicted RBP17.15■□□□□ 0.34
LITAF-219ENST00000576334 PAK3O75914 559 aaPredicted RBP17.14■□□□□ 0.33
LITAF-219ENST00000576334 NBPF8Q3BBV2 869 aa17.14■□□□□ 0.33
LITAF-219ENST00000576334 EIF3AQ14152 1382 aaKnown RBP17.14■□□□□ 0.33
LITAF-219ENST00000576334 GPRASP1Q5JY77 1395 aa17.14■□□□□ 0.33
LITAF-219ENST00000576334 TOPAZ1Q8N9V7 1692 aa17.13■□□□□ 0.33
LITAF-219ENST00000576334 QRICH2Q9H0J4 1663 aa17.13■□□□□ 0.33
LITAF-219ENST00000576334 ITSN1Q15811 1721 aa17.13■□□□□ 0.33
LITAF-219ENST00000576334 SLIT2O94813 1529 aa17.13■□□□□ 0.33
LITAF-219ENST00000576334 CABP2Q9NPB3 220 aa17.13■□□□□ 0.33
LITAF-219ENST00000576334 CENPJQ9HC77 1338 aaPredicted RBP17.13■□□□□ 0.33
LITAF-219ENST00000576334 ARHGEF10O15013 1369 aa17.13■□□□□ 0.33
LITAF-219ENST00000576334 PLCH1Q4KWH8 1693 aa17.12■□□□□ 0.33
LITAF-219ENST00000576334 EP400Q96L91 3159 aa17.12■□□□□ 0.33
LITAF-219ENST00000576334 FAM83GA6ND36 823 aa17.11■□□□□ 0.33
LITAF-219ENST00000576334 TRIM26Q12899 539 aaPredicted RBP17.11■□□□□ 0.33
LITAF-219ENST00000576334 NUTM2GQ5VZR2 741 aa17.11■□□□□ 0.33
LITAF-219ENST00000576334 GLI3P10071 1580 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms