RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TECPR2O15040 1411 aa31.49■■■□□ 2.63
VPS53-216ENST00000574029 RGL3Q3MIN7 710 aa31.49■■■□□ 2.63
VPS53-216ENST00000574029 QTRT2Q9H974 415 aaKnown RBP31.48■■■□□ 2.63
VPS53-216ENST00000574029 COL22A1Q8NFW1 1626 aaPredicted RBP31.48■■■□□ 2.63
VPS53-216ENST00000574029 KNDC1Q76NI1 1749 aa31.46■■■□□ 2.63
VPS53-216ENST00000574029 ADAMTS2O95450 1211 aa31.46■■■□□ 2.63
VPS53-216ENST00000574029 RBM6P78332 1123 aaKnown RBP31.46■■■□□ 2.63
VPS53-216ENST00000574029 LRPPRCP42704 1394 aaKnown RBP31.45■■■□□ 2.63
VPS53-216ENST00000574029 NGLY1Q96IV0 654 aa31.45■■■□□ 2.63
VPS53-216ENST00000574029 PIK3C2GO75747 1445 aa31.44■■■□□ 2.62
VPS53-216ENST00000574029 RGS12O14924 1447 aa31.43■■■□□ 2.62
VPS53-216ENST00000574029 ESCO1Q5FWF5 840 aa31.43■■■□□ 2.62
VPS53-216ENST00000574029 ABCC11Q96J66 1382 aa31.43■■■□□ 2.62
VPS53-216ENST00000574029 STK26Q9P289 416 aa31.42■■■□□ 2.62
VPS53-216ENST00000574029 NPHP3Q7Z494 1330 aa31.42■■■□□ 2.62
VPS53-216ENST00000574029 PXDNQ92626 1479 aa31.41■■■□□ 2.62
VPS53-216ENST00000574029 WAPLQ7Z5K2 1190 aa31.41■■■□□ 2.62
VPS53-216ENST00000574029 TMEM132EQ6IEE7 984 aa31.39■■■□□ 2.62
VPS53-216ENST00000574029 ACIN1Q9UKV3 1341 aaKnown RBP31.39■■■□□ 2.62
VPS53-216ENST00000574029 PLEKHH1Q9ULM0 1364 aa31.37■■■□□ 2.61
VPS53-216ENST00000574029 MYOM2P54296 1465 aa31.37■■■□□ 2.61
VPS53-216ENST00000574029 FNBP4Q8N3X1 1017 aaPredicted RBP31.36■■■□□ 2.61
VPS53-216ENST00000574029 FMN2Q9NZ56 1722 aa31.35■■■□□ 2.61
VPS53-216ENST00000574029 YTHDC2Q9H6S0 1430 aaKnown RBP31.35■■■□□ 2.61
VPS53-216ENST00000574029 USP21Q9UK80 565 aa31.35■■■□□ 2.61
VPS53-216ENST00000574029 FOXO3O43524 673 aa31.34■■■□□ 2.61
VPS53-216ENST00000574029 MARF1Q9Y4F3 1742 aaKnown RBP31.33■■■□□ 2.61
VPS53-216ENST00000574029 NRXN1Q9ULB1 1477 aa31.32■■■□□ 2.6
VPS53-216ENST00000574029 NUTM2FA1L443 756 aa31.31■■■□□ 2.6
VPS53-216ENST00000574029 SIRT1Q96EB6 747 aa31.31■■■□□ 2.6
VPS53-216ENST00000574029 TRPC5Q9UL62 973 aaPredicted RBP31.31■■■□□ 2.6
VPS53-216ENST00000574029 XPCQ01831 940 aaPredicted RBP31.3■■■□□ 2.6
VPS53-216ENST00000574029 C14orf93Q9H972 538 aaKnown RBP31.3■■■□□ 2.6
VPS53-216ENST00000574029 KIF1AQ12756 1690 aa31.29■■■□□ 2.6
VPS53-216ENST00000574029 ATRNO75882 1429 aa31.29■■■□□ 2.6
VPS53-216ENST00000574029 BCL9LQ86UU0 1499 aa31.23■■■□□ 2.59
VPS53-216ENST00000574029 DHX57Q6P158 1386 aaKnown RBP31.22■■■□□ 2.59
VPS53-216ENST00000574029 CFAP70Q5T0N1 1121 aa31.22■■■□□ 2.59
VPS53-216ENST00000574029 RGPD8O14715 1765 aaPredicted RBP31.22■■■□□ 2.59
VPS53-216ENST00000574029 SPATA31A3Q5VYP0 1347 aa31.21■■■□□ 2.59
VPS53-216ENST00000574029 ATAD2Q6PL18 1390 aa31.2■■■□□ 2.59
VPS53-216ENST00000574029 RAB3GAP2Q9H2M9 1393 aa31.19■■■□□ 2.58
VPS53-216ENST00000574029 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.18■■■□□ 2.58
VPS53-216ENST00000574029 KRT28Q7Z3Y7 464 aa31.16■■■□□ 2.58
VPS53-216ENST00000574029 DLC1Q96QB1 1528 aa31.15■■■□□ 2.58
VPS53-216ENST00000574029 PHF8Q9UPP1 1060 aa31.14■■■□□ 2.58
VPS53-216ENST00000574029 PRAM1Q96QH2 718 aa31.13■■■□□ 2.57
VPS53-216ENST00000574029 GJD4Q96KN9 370 aaPredicted RBP31.12■■■□□ 2.57
VPS53-216ENST00000574029 SLIT2O94813 1529 aa31.12■■■□□ 2.57
VPS53-216ENST00000574029 USP32Q8NFA0 1604 aa31.12■■■□□ 2.57
VPS53-216ENST00000574029 ADGRB1O14514 1584 aa31.1■■■□□ 2.57
VPS53-216ENST00000574029 TNS3Q68CZ2 1445 aa31.1■■■□□ 2.57
VPS53-216ENST00000574029 PSME1Q06323 249 aa31.09■■■□□ 2.57
VPS53-216ENST00000574029 ADGRB2O60241 1585 aa31.09■■■□□ 2.57
VPS53-216ENST00000574029 SAFB2Q14151 953 aaKnown RBP eCLIP31.08■■■□□ 2.57
VPS53-216ENST00000574029 UNC5CLQ8IV45 518 aa31.08■■■□□ 2.57
VPS53-216ENST00000574029 SBNO1A3KN83 1393 aa31.06■■■□□ 2.56
VPS53-216ENST00000574029 POGKQ9P215 609 aa31.06■■■□□ 2.56
VPS53-216ENST00000574029 ANKARQ7Z5J8 1434 aa31.06■■■□□ 2.56
VPS53-216ENST00000574029 GLI3P10071 1580 aa31.05■■■□□ 2.56
VPS53-216ENST00000574029 RALGAPBQ86X10 1494 aa31.04■■■□□ 2.56
VPS53-216ENST00000574029 ABCA3Q99758 1704 aa31.04■■■□□ 2.56
VPS53-216ENST00000574029 CABLES1Q8TDN4 633 aa31■■■□□ 2.55
VPS53-216ENST00000574029 NWD2Q9ULI1 1742 aa31■■■□□ 2.55
VPS53-216ENST00000574029 ARHGEF10O15013 1369 aa31■■■□□ 2.55
VPS53-216ENST00000574029 PLCH1Q4KWH8 1693 aa31■■■□□ 2.55
VPS53-216ENST00000574029 HAP1P54257 671 aaPredicted RBP30.99■■■□□ 2.55
VPS53-216ENST00000574029 CCDC125Q86Z20 511 aa30.99■■■□□ 2.55
VPS53-216ENST00000574029 TRAK1Q9UPV9 953 aa30.99■■■□□ 2.55
VPS53-216ENST00000574029 PMFBP1Q8TBY8 1022 aa30.98■■■□□ 2.55
VPS53-216ENST00000574029 DCAF11Q8TEB1 546 aa30.97■■■□□ 2.55
VPS53-216ENST00000574029 KDM2AQ9Y2K7 1162 aa30.97■■■□□ 2.55
VPS53-216ENST00000574029 TRPM3Q9HCF6 1732 aaPredicted RBP30.97■■■□□ 2.55
VPS53-216ENST00000574029 STAC3Q96MF2 364 aa30.96■■■□□ 2.55
VPS53-216ENST00000574029 HRCP23327 699 aa30.95■■■□□ 2.55
VPS53-216ENST00000574029 BRWD3Q6RI45 1802 aa30.94■■■□□ 2.54
VPS53-216ENST00000574029 LMOD2Q6P5Q4 547 aa30.94■■■□□ 2.54
VPS53-216ENST00000574029 HIRIP3Q9BW71 556 aaPredicted RBP30.94■■■□□ 2.54
VPS53-216ENST00000574029 EIF3AQ14152 1382 aaKnown RBP30.93■■■□□ 2.54
VPS53-216ENST00000574029 VPS72Q15906 364 aa30.93■■■□□ 2.54
VPS53-216ENST00000574029 TULP4Q9NRJ4 1543 aa30.93■■■□□ 2.54
VPS53-216ENST00000574029 EP400Q96L91 3159 aa30.93■■■□□ 2.54
VPS53-216ENST00000574029 ALS2Q96Q42 1657 aa30.92■■■□□ 2.54
VPS53-216ENST00000574029 MINK1Q8N4C8 1332 aaPredicted RBP30.92■■■□□ 2.54
VPS53-216ENST00000574029 PRR36Q9H6K5 1346 aa30.92■■■□□ 2.54
VPS53-216ENST00000574029 PLEKHG5O94827 1062 aa30.91■■■□□ 2.54
VPS53-216ENST00000574029 WASLO00401 505 aaPredicted RBP30.89■■■□□ 2.54
VPS53-216ENST00000574029 GPRASP1Q5JY77 1395 aa30.88■■■□□ 2.53
VPS53-216ENST00000574029 ARHGEF28Q8N1W1 1705 aaKnown RBP30.87■■■□□ 2.53
VPS53-216ENST00000574029 FAM83GA6ND36 823 aa30.87■■■□□ 2.53
VPS53-216ENST00000574029 ONECUT3O60422 494 aaPredicted RBP30.87■■■□□ 2.53
VPS53-216ENST00000574029 SEPT12Q8IYM1 358 aa30.86■■■□□ 2.53
VPS53-216ENST00000574029 ZRANB1Q9UGI0 708 aa30.86■■■□□ 2.53
VPS53-216ENST00000574029 NRAPQ86VF7 1730 aa30.86■■■□□ 2.53
VPS53-216ENST00000574029 BLMP54132 1417 aaPredicted RBP30.85■■■□□ 2.53
VPS53-216ENST00000574029 CRYBG1Q9Y4K1 1723 aa30.82■■■□□ 2.52
VPS53-216ENST00000574029 CCDC9Q9Y3X0 531 aaKnown RBP30.82■■■□□ 2.52
VPS53-216ENST00000574029 COL14A1Q05707 1796 aaKnown RBP30.82■■■□□ 2.52
VPS53-216ENST00000574029 ITSN1Q15811 1721 aa30.81■■■□□ 2.52
VPS53-216ENST00000574029 ATP7BP35670 1465 aa30.78■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms