RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 SAFB2Q14151 953 aaKnown RBP eCLIP24.16■■□□□ 1.46
SMPD3-211ENST00000568373 ANKRD36BQ8N2N9 1353 aa24.15■■□□□ 1.46
SMPD3-211ENST00000568373 PRAM1Q96QH2 718 aa24.14■■□□□ 1.46
SMPD3-211ENST00000568373 CABP2Q9NPB3 220 aa24.14■■□□□ 1.45
SMPD3-211ENST00000568373 NINLQ9Y2I6 1382 aa24.13■■□□□ 1.45
SMPD3-211ENST00000568373 SETD1AO15047 1707 aaKnown RBP24.13■■□□□ 1.45
SMPD3-211ENST00000568373 TSHZ2Q9NRE2 1034 aa24.12■■□□□ 1.45
SMPD3-211ENST00000568373 POGKQ9P215 609 aa24.12■■□□□ 1.45
SMPD3-211ENST00000568373 CGNL1Q0VF96 1302 aa24.11■■□□□ 1.45
SMPD3-211ENST00000568373 MORC1Q86VD1 984 aa24.1■■□□□ 1.45
SMPD3-211ENST00000568373 TNRQ92752 1358 aa24.1■■□□□ 1.45
SMPD3-211ENST00000568373 DLC1Q96QB1 1528 aa24.09■■□□□ 1.45
SMPD3-211ENST00000568373 SRPK2P78362 688 aaKnown RBP24.09■■□□□ 1.45
SMPD3-211ENST00000568373 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.09■■□□□ 1.45
SMPD3-211ENST00000568373 CDCA7LQ96GN5 454 aa24.09■■□□□ 1.45
SMPD3-211ENST00000568373 POLR3AO14802 1390 aaPredicted RBP24.08■■□□□ 1.45
SMPD3-211ENST00000568373 ATAD2Q6PL18 1390 aa24.08■■□□□ 1.45
SMPD3-211ENST00000568373 MINK1Q8N4C8 1332 aaPredicted RBP24.08■■□□□ 1.45
SMPD3-211ENST00000568373 NSD2O96028 1365 aa24.07■■□□□ 1.44
SMPD3-211ENST00000568373 NRXN3Q9Y4C0 1643 aa24.07■■□□□ 1.44
SMPD3-211ENST00000568373 RCAN3Q9UKA8 241 aa24.06■■□□□ 1.44
SMPD3-211ENST00000568373 A0A1W2PP64 1363 aa24.04■■□□□ 1.44
SMPD3-211ENST00000568373 PLEKHH1Q9ULM0 1364 aa24.04■■□□□ 1.44
SMPD3-211ENST00000568373 ABCC11Q96J66 1382 aa24.03■■□□□ 1.44
SMPD3-211ENST00000568373 UBR1Q8IWV7 1749 aa24.02■■□□□ 1.44
SMPD3-211ENST00000568373 HDGFP51858 240 aaKnown RBP24.01■■□□□ 1.43
SMPD3-211ENST00000568373 ZNF521Q96K83 1311 aa24.01■■□□□ 1.43
SMPD3-211ENST00000568373 RRP1P56182 461 aaKnown RBP24.01■■□□□ 1.43
SMPD3-211ENST00000568373 TNNT2P45379 298 aaPredicted RBP24■■□□□ 1.43
SMPD3-211ENST00000568373 B4GALNT3Q6L9W6 998 aa23.99■■□□□ 1.43
SMPD3-211ENST00000568373 CDK19Q9BWU1 502 aa23.99■■□□□ 1.43
SMPD3-211ENST00000568373 SHPRHQ149N8 1683 aa23.99■■□□□ 1.43
SMPD3-211ENST00000568373 CCDC146Q8IYE0 955 aa23.99■■□□□ 1.43
SMPD3-211ENST00000568373 TERF2IPQ9NYB0 399 aa23.99■■□□□ 1.43
SMPD3-211ENST00000568373 CD163L1Q9NR16 1453 aa23.99■■□□□ 1.43
SMPD3-211ENST00000568373 TMEM2Q9UHN6 1383 aa23.98■■□□□ 1.43
SMPD3-211ENST00000568373 METP08581 1390 aa23.97■■□□□ 1.43
SMPD3-211ENST00000568373 WAPLQ7Z5K2 1190 aa23.96■■□□□ 1.43
SMPD3-211ENST00000568373 NLRP1Q9C000 1473 aa23.95■■□□□ 1.42
SMPD3-211ENST00000568373 KNDC1Q76NI1 1749 aa23.95■■□□□ 1.42
SMPD3-211ENST00000568373 APAF1O14727 1248 aa23.95■■□□□ 1.42
SMPD3-211ENST00000568373 MTHFSP49914 203 aa23.95■■□□□ 1.42
SMPD3-211ENST00000568373 PLPPR3Q6T4P5 718 aa23.95■■□□□ 1.42
SMPD3-211ENST00000568373 GOLGA2Q08379 1002 aa23.94■■□□□ 1.42
SMPD3-211ENST00000568373 NGEFQ8N5V2 710 aa23.93■■□□□ 1.42
SMPD3-211ENST00000568373 CEBPAP49715 358 aaPredicted RBP23.93■■□□□ 1.42
SMPD3-211ENST00000568373 MED14O60244 1454 aa23.92■■□□□ 1.42
SMPD3-211ENST00000568373 TECPR2O15040 1411 aa23.92■■□□□ 1.42
SMPD3-211ENST00000568373 CFAP53Q96M91 514 aa23.92■■□□□ 1.42
SMPD3-211ENST00000568373 ANKRD26Q9UPS8 1709 aa23.92■■□□□ 1.42
SMPD3-211ENST00000568373 DUSP27Q5VZP5 1158 aa23.91■■□□□ 1.42
SMPD3-211ENST00000568373 HDGFL2Q7Z4V5 671 aaPredicted RBP23.91■■□□□ 1.42
SMPD3-211ENST00000568373 FAM135BQ49AJ0 1406 aa23.9■■□□□ 1.42
SMPD3-211ENST00000568373 CABP1Q9NZU7 370 aa23.9■■□□□ 1.42
SMPD3-211ENST00000568373 C3P01024 1663 aa23.9■■□□□ 1.42
SMPD3-211ENST00000568373 SIRT1Q96EB6 747 aa23.9■■□□□ 1.42
SMPD3-211ENST00000568373 CPS1P31327 1500 aa23.89■■□□□ 1.41
SMPD3-211ENST00000568373 ATP7BP35670 1465 aa23.89■■□□□ 1.41
SMPD3-211ENST00000568373 FER1L4A9Z1Z3 1794 aa23.88■■□□□ 1.41
SMPD3-211ENST00000568373 FYB1O15117 783 aa23.88■■□□□ 1.41
SMPD3-211ENST00000568373 SLFN5Q08AF3 891 aa23.88■■□□□ 1.41
SMPD3-211ENST00000568373 GGNBP2Q9H3C7 697 aa23.88■■□□□ 1.41
SMPD3-211ENST00000568373 TXNDC2Q86VQ3 553 aa23.87■■□□□ 1.41
SMPD3-211ENST00000568373 ADAMTS13Q76LX8 1427 aa23.87■■□□□ 1.41
SMPD3-211ENST00000568373 CCDC136Q96JN2 1154 aa23.87■■□□□ 1.41
SMPD3-211ENST00000568373 TRMT2AQ8IZ69 625 aaKnown RBP23.86■■□□□ 1.41
SMPD3-211ENST00000568373 PLEKHG1Q9ULL1 1385 aa23.86■■□□□ 1.41
SMPD3-211ENST00000568373 KIF20BQ96Q89 1820 aa23.86■■□□□ 1.41
SMPD3-211ENST00000568373 WASLO00401 505 aaPredicted RBP23.85■■□□□ 1.41
SMPD3-211ENST00000568373 RUNDC1Q96C34 613 aa23.84■■□□□ 1.41
SMPD3-211ENST00000568373 LTKP29376 864 aa23.83■■□□□ 1.41
SMPD3-211ENST00000568373 IQSEC2Q5JU85 1478 aa23.83■■□□□ 1.4
SMPD3-211ENST00000568373 EXOC6Q8TAG9 804 aa23.82■■□□□ 1.4
SMPD3-211ENST00000568373 E9PSI1 815 aa23.81■■□□□ 1.4
SMPD3-211ENST00000568373 SPINK5Q9NQ38 1064 aaPredicted RBP23.8■■□□□ 1.4
SMPD3-211ENST00000568373 SLIT1O75093 1534 aa23.8■■□□□ 1.4
SMPD3-211ENST00000568373 PPIP5K1Q6PFW1 1433 aa23.79■■□□□ 1.4
SMPD3-211ENST00000568373 WWC1Q8IX03 1113 aa23.79■■□□□ 1.4
SMPD3-211ENST00000568373 COL3A1P02461 1466 aaPredicted RBP23.79■■□□□ 1.4
SMPD3-211ENST00000568373 NKTRP30414 1462 aaKnown RBP23.79■■□□□ 1.4
SMPD3-211ENST00000568373 ARHGAP23Q9P227 1491 aa23.79■■□□□ 1.4
SMPD3-211ENST00000568373 CPSF1Q10570 1443 aaKnown RBP23.79■■□□□ 1.4
SMPD3-211ENST00000568373 PLIN1O60240 522 aa23.79■■□□□ 1.4
SMPD3-211ENST00000568373 ROBO2Q9HCK4 1378 aa23.78■■□□□ 1.4
SMPD3-211ENST00000568373 EID1Q9Y6B2 187 aa23.78■■□□□ 1.4
SMPD3-211ENST00000568373 TCP11L2Q8N4U5 519 aa23.77■■□□□ 1.4
SMPD3-211ENST00000568373 RBM19Q9Y4C8 960 aaKnown RBP23.77■■□□□ 1.4
SMPD3-211ENST00000568373 U2AF1L5P0DN76 240 aaPredicted RBP23.76■■□□□ 1.39
SMPD3-211ENST00000568373 U2AF1Q01081 240 aaKnown RBP eCLIP23.76■■□□□ 1.39
SMPD3-211ENST00000568373 NUDT16Q96DE0 195 aaKnown RBP23.76■■□□□ 1.39
SMPD3-211ENST00000568373 DMRT2Q9Y5R5 561 aa23.76■■□□□ 1.39
SMPD3-211ENST00000568373 EDC4Q6P2E9 1401 aaKnown RBP23.76■■□□□ 1.39
SMPD3-211ENST00000568373 PHF23Q9BUL5 403 aaPredicted RBP23.75■■□□□ 1.39
SMPD3-211ENST00000568373 CDC42BPGQ6DT37 1551 aa23.75■■□□□ 1.39
SMPD3-211ENST00000568373 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.74■■□□□ 1.39
SMPD3-211ENST00000568373 CCDC61Q9Y6R9 512 aa23.74■■□□□ 1.39
SMPD3-211ENST00000568373 ADGRB2O60241 1585 aa23.74■■□□□ 1.39
SMPD3-211ENST00000568373 ADAMTSL3P82987 1691 aa23.74■■□□□ 1.39
SMPD3-211ENST00000568373 NCBP3Q53F19 620 aaKnown RBP23.74■■□□□ 1.39
SMPD3-211ENST00000568373 RIMS1Q86UR5 1692 aaKnown RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms