RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ABCC11Q96J66 1382 aa27.73■■■□□ 2.03
CLN3-218ENST00000565688 STK26Q9P289 416 aa27.73■■■□□ 2.03
CLN3-218ENST00000565688 AFF2P51816 1311 aa27.71■■■□□ 2.03
CLN3-218ENST00000565688 RXRBP28702 533 aa27.7■■■□□ 2.02
CLN3-218ENST00000565688 RAB3GAP2Q9H2M9 1393 aa27.7■■■□□ 2.02
CLN3-218ENST00000565688 TMEM132EQ6IEE7 984 aa27.69■■■□□ 2.02
CLN3-218ENST00000565688 KNDC1Q76NI1 1749 aa27.68■■■□□ 2.02
CLN3-218ENST00000565688 ESCO1Q5FWF5 840 aa27.67■■■□□ 2.02
CLN3-218ENST00000565688 WAPLQ7Z5K2 1190 aa27.67■■■□□ 2.02
CLN3-218ENST00000565688 C8orf37Q96NL8 207 aa27.67■■■□□ 2.02
CLN3-218ENST00000565688 YTHDC2Q9H6S0 1430 aaKnown RBP27.67■■■□□ 2.02
CLN3-218ENST00000565688 NPHP3Q7Z494 1330 aa27.67■■■□□ 2.02
CLN3-218ENST00000565688 CDK12Q9NYV4 1490 aaPredicted RBP27.65■■■□□ 2.02
CLN3-218ENST00000565688 C14orf93Q9H972 538 aaKnown RBP27.65■■■□□ 2.02
CLN3-218ENST00000565688 MYOM2P54296 1465 aa27.64■■■□□ 2.02
CLN3-218ENST00000565688 NRXN1Q9ULB1 1477 aa27.64■■■□□ 2.02
CLN3-218ENST00000565688 SIRT1Q96EB6 747 aa27.64■■■□□ 2.02
CLN3-218ENST00000565688 ADAMTS2O95450 1211 aa27.62■■■□□ 2.01
CLN3-218ENST00000565688 PLEKHH1Q9ULM0 1364 aa27.61■■■□□ 2.01
CLN3-218ENST00000565688 NGLY1Q96IV0 654 aa27.61■■■□□ 2.01
CLN3-218ENST00000565688 DHX57Q6P158 1386 aaKnown RBP27.6■■■□□ 2.01
CLN3-218ENST00000565688 QTRT2Q9H974 415 aaKnown RBP27.59■■■□□ 2.01
CLN3-218ENST00000565688 COL22A1Q8NFW1 1626 aaPredicted RBP27.59■■■□□ 2.01
CLN3-218ENST00000565688 PXDNQ92626 1479 aa27.58■■■□□ 2.01
CLN3-218ENST00000565688 FOXO3O43524 673 aa27.58■■■□□ 2.01
CLN3-218ENST00000565688 RBM6P78332 1123 aaKnown RBP27.57■■■□□ 2
CLN3-218ENST00000565688 CFAP70Q5T0N1 1121 aa27.57■■■□□ 2
CLN3-218ENST00000565688 NUTM2FA1L443 756 aa27.56■■■□□ 2
CLN3-218ENST00000565688 FMN2Q9NZ56 1722 aa27.55■■■□□ 2
CLN3-218ENST00000565688 HRCP23327 699 aa27.54■■■□□ 2
CLN3-218ENST00000565688 UPF1Q92900 1129 aaKnown RBP eCLIP27.53■■■□□ 2
CLN3-218ENST00000565688 XPCQ01831 940 aaPredicted RBP27.52■■■□□ 2
CLN3-218ENST00000565688 KIF1AQ12756 1690 aa27.52■■■□□ 2
CLN3-218ENST00000565688 FNBP4Q8N3X1 1017 aaPredicted RBP27.51■■□□□ 1.99
CLN3-218ENST00000565688 USP21Q9UK80 565 aa27.51■■□□□ 1.99
CLN3-218ENST00000565688 PRAM1Q96QH2 718 aa27.49■■□□□ 1.99
CLN3-218ENST00000565688 DLC1Q96QB1 1528 aa27.48■■□□□ 1.99
CLN3-218ENST00000565688 STAC3Q96MF2 364 aa27.48■■□□□ 1.99
CLN3-218ENST00000565688 TRPC5Q9UL62 973 aaPredicted RBP27.48■■□□□ 1.99
CLN3-218ENST00000565688 RGS12O14924 1447 aa27.48■■□□□ 1.99
CLN3-218ENST00000565688 POGKQ9P215 609 aa27.46■■□□□ 1.99
CLN3-218ENST00000565688 SPATA31A3Q5VYP0 1347 aa27.44■■□□□ 1.98
CLN3-218ENST00000565688 PHF8Q9UPP1 1060 aa27.44■■□□□ 1.98
CLN3-218ENST00000565688 ADGRB1O14514 1584 aa27.43■■□□□ 1.98
CLN3-218ENST00000565688 SAFB2Q14151 953 aaKnown RBP eCLIP27.43■■□□□ 1.98
CLN3-218ENST00000565688 KRT28Q7Z3Y7 464 aa27.43■■□□□ 1.98
CLN3-218ENST00000565688 DCAF11Q8TEB1 546 aa27.43■■□□□ 1.98
CLN3-218ENST00000565688 ATRNO75882 1429 aa27.41■■□□□ 1.98
CLN3-218ENST00000565688 PSME1Q06323 249 aa27.41■■□□□ 1.98
CLN3-218ENST00000565688 KDM2AQ9Y2K7 1162 aa27.41■■□□□ 1.98
CLN3-218ENST00000565688 MARF1Q9Y4F3 1742 aaKnown RBP27.41■■□□□ 1.98
CLN3-218ENST00000565688 ANKARQ7Z5J8 1434 aa27.4■■□□□ 1.98
CLN3-218ENST00000565688 ADGRB2O60241 1585 aa27.39■■□□□ 1.97
CLN3-218ENST00000565688 TRAK1Q9UPV9 953 aa27.38■■□□□ 1.97
CLN3-218ENST00000565688 BCL9LQ86UU0 1499 aa27.38■■□□□ 1.97
CLN3-218ENST00000565688 RGPD8O14715 1765 aaPredicted RBP27.37■■□□□ 1.97
CLN3-218ENST00000565688 TNS3Q68CZ2 1445 aa27.37■■□□□ 1.97
CLN3-218ENST00000565688 SBNO1A3KN83 1393 aa27.35■■□□□ 1.97
CLN3-218ENST00000565688 EIF3AQ14152 1382 aaKnown RBP27.35■■□□□ 1.97
CLN3-218ENST00000565688 ATAD2Q6PL18 1390 aa27.34■■□□□ 1.97
CLN3-218ENST00000565688 ARHGEF10O15013 1369 aa27.32■■□□□ 1.96
CLN3-218ENST00000565688 USP32Q8NFA0 1604 aa27.31■■□□□ 1.96
CLN3-218ENST00000565688 HAP1P54257 671 aaPredicted RBP27.31■■□□□ 1.96
CLN3-218ENST00000565688 GJD4Q96KN9 370 aaPredicted RBP27.3■■□□□ 1.96
CLN3-218ENST00000565688 HIRIP3Q9BW71 556 aaPredicted RBP27.3■■□□□ 1.96
CLN3-218ENST00000565688 MINK1Q8N4C8 1332 aaPredicted RBP27.3■■□□□ 1.96
CLN3-218ENST00000565688 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.3■■□□□ 1.96
CLN3-218ENST00000565688 UNC5CLQ8IV45 518 aa27.29■■□□□ 1.96
CLN3-218ENST00000565688 PMFBP1Q8TBY8 1022 aa27.29■■□□□ 1.96
CLN3-218ENST00000565688 SLIT2O94813 1529 aa27.29■■□□□ 1.96
CLN3-218ENST00000565688 TULP4Q9NRJ4 1543 aa27.27■■□□□ 1.96
CLN3-218ENST00000565688 WASLO00401 505 aaPredicted RBP27.27■■□□□ 1.96
CLN3-218ENST00000565688 LMOD2Q6P5Q4 547 aa27.27■■□□□ 1.96
CLN3-218ENST00000565688 GPRASP1Q5JY77 1395 aa27.25■■□□□ 1.95
CLN3-218ENST00000565688 CABLES1Q8TDN4 633 aa27.24■■□□□ 1.95
CLN3-218ENST00000565688 PRR36Q9H6K5 1346 aa27.23■■□□□ 1.95
CLN3-218ENST00000565688 RALGAPBQ86X10 1494 aa27.21■■□□□ 1.95
CLN3-218ENST00000565688 ARHGEF28Q8N1W1 1705 aaKnown RBP27.21■■□□□ 1.95
CLN3-218ENST00000565688 EP400Q96L91 3159 aa27.19■■□□□ 1.94
CLN3-218ENST00000565688 ABCA3Q99758 1704 aa27.19■■□□□ 1.94
CLN3-218ENST00000565688 PLEKHG5O94827 1062 aa27.19■■□□□ 1.94
CLN3-218ENST00000565688 TRPM3Q9HCF6 1732 aaPredicted RBP27.19■■□□□ 1.94
CLN3-218ENST00000565688 NGDNQ8NEJ9 315 aaKnown RBP27.18■■□□□ 1.94
CLN3-218ENST00000565688 NWD2Q9ULI1 1742 aa27.18■■□□□ 1.94
CLN3-218ENST00000565688 GLI3P10071 1580 aa27.18■■□□□ 1.94
CLN3-218ENST00000565688 KIAA1210Q9ULL0 1709 aa27.17■■□□□ 1.94
CLN3-218ENST00000565688 VPS72Q15906 364 aa27.17■■□□□ 1.94
CLN3-218ENST00000565688 CCDC125Q86Z20 511 aa27.17■■□□□ 1.94
CLN3-218ENST00000565688 PLCH1Q4KWH8 1693 aa27.15■■□□□ 1.94
CLN3-218ENST00000565688 ALS2Q96Q42 1657 aa27.14■■□□□ 1.94
CLN3-218ENST00000565688 ATP7BP35670 1465 aa27.13■■□□□ 1.93
CLN3-218ENST00000565688 ITSN1Q15811 1721 aa27.13■■□□□ 1.93
CLN3-218ENST00000565688 FAM83GA6ND36 823 aa27.13■■□□□ 1.93
CLN3-218ENST00000565688 NUDT16Q96DE0 195 aaKnown RBP27.13■■□□□ 1.93
CLN3-218ENST00000565688 CCDC9Q9Y3X0 531 aaKnown RBP27.11■■□□□ 1.93
CLN3-218ENST00000565688 PAK3O75914 559 aaPredicted RBP27.1■■□□□ 1.93
CLN3-218ENST00000565688 CDK19Q9BWU1 502 aa27.1■■□□□ 1.93
CLN3-218ENST00000565688 ONECUT3O60422 494 aaPredicted RBP27.08■■□□□ 1.93
CLN3-218ENST00000565688 SEPT12Q8IYM1 358 aa27.08■■□□□ 1.93
CLN3-218ENST00000565688 NBPF1Q3BBV0 1214 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms