RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CDC42BPGQ6DT37 1551 aa25.46■■□□□ 1.67
CLN3-216ENST00000565316 AFF2P51816 1311 aa25.46■■□□□ 1.67
CLN3-216ENST00000565316 RXRBP28702 533 aa25.45■■□□□ 1.66
CLN3-216ENST00000565316 STK26Q9P289 416 aa25.42■■□□□ 1.66
CLN3-216ENST00000565316 CDK12Q9NYV4 1490 aaPredicted RBP25.42■■□□□ 1.66
CLN3-216ENST00000565316 TMEM132EQ6IEE7 984 aa25.41■■□□□ 1.66
CLN3-216ENST00000565316 WAPLQ7Z5K2 1190 aa25.41■■□□□ 1.66
CLN3-216ENST00000565316 C8orf37Q96NL8 207 aa25.4■■□□□ 1.66
CLN3-216ENST00000565316 NRXN1Q9ULB1 1477 aa25.39■■□□□ 1.66
CLN3-216ENST00000565316 YTHDC2Q9H6S0 1430 aaKnown RBP25.39■■□□□ 1.66
CLN3-216ENST00000565316 ESCO1Q5FWF5 840 aa25.38■■□□□ 1.65
CLN3-216ENST00000565316 SIRT1Q96EB6 747 aa25.38■■□□□ 1.65
CLN3-216ENST00000565316 C14orf93Q9H972 538 aaKnown RBP25.38■■□□□ 1.65
CLN3-216ENST00000565316 KNDC1Q76NI1 1749 aa25.38■■□□□ 1.65
CLN3-216ENST00000565316 RAB3GAP2Q9H2M9 1393 aa25.38■■□□□ 1.65
CLN3-216ENST00000565316 PLEKHH1Q9ULM0 1364 aa25.38■■□□□ 1.65
CLN3-216ENST00000565316 NPHP3Q7Z494 1330 aa25.37■■□□□ 1.65
CLN3-216ENST00000565316 QTRT2Q9H974 415 aaKnown RBP25.36■■□□□ 1.65
CLN3-216ENST00000565316 MYOM2P54296 1465 aa25.35■■□□□ 1.65
CLN3-216ENST00000565316 PXDNQ92626 1479 aa25.35■■□□□ 1.65
CLN3-216ENST00000565316 ADAMTS2O95450 1211 aa25.35■■□□□ 1.65
CLN3-216ENST00000565316 UPF1Q92900 1129 aaKnown RBP eCLIP25.35■■□□□ 1.65
CLN3-216ENST00000565316 COL22A1Q8NFW1 1626 aaPredicted RBP25.35■■□□□ 1.65
CLN3-216ENST00000565316 NGLY1Q96IV0 654 aa25.34■■□□□ 1.65
CLN3-216ENST00000565316 FOXO3O43524 673 aa25.33■■□□□ 1.64
CLN3-216ENST00000565316 RBM6P78332 1123 aaKnown RBP25.33■■□□□ 1.64
CLN3-216ENST00000565316 CFAP70Q5T0N1 1121 aa25.31■■□□□ 1.64
CLN3-216ENST00000565316 FNBP4Q8N3X1 1017 aaPredicted RBP25.3■■□□□ 1.64
CLN3-216ENST00000565316 DHX57Q6P158 1386 aaKnown RBP25.3■■□□□ 1.64
CLN3-216ENST00000565316 NUTM2FA1L443 756 aa25.29■■□□□ 1.64
CLN3-216ENST00000565316 FMN2Q9NZ56 1722 aa25.28■■□□□ 1.64
CLN3-216ENST00000565316 RGS12O14924 1447 aa25.27■■□□□ 1.64
CLN3-216ENST00000565316 XPCQ01831 940 aaPredicted RBP25.27■■□□□ 1.64
CLN3-216ENST00000565316 USP21Q9UK80 565 aa25.26■■□□□ 1.63
CLN3-216ENST00000565316 HRCP23327 699 aa25.25■■□□□ 1.63
CLN3-216ENST00000565316 TRPC5Q9UL62 973 aaPredicted RBP25.23■■□□□ 1.63
CLN3-216ENST00000565316 DLC1Q96QB1 1528 aa25.22■■□□□ 1.63
CLN3-216ENST00000565316 KIF1AQ12756 1690 aa25.22■■□□□ 1.63
CLN3-216ENST00000565316 ATRNO75882 1429 aa25.22■■□□□ 1.63
CLN3-216ENST00000565316 SPATA31A3Q5VYP0 1347 aa25.21■■□□□ 1.63
CLN3-216ENST00000565316 PRAM1Q96QH2 718 aa25.21■■□□□ 1.63
CLN3-216ENST00000565316 ADGRB1O14514 1584 aa25.2■■□□□ 1.62
CLN3-216ENST00000565316 BCL9LQ86UU0 1499 aa25.19■■□□□ 1.62
CLN3-216ENST00000565316 KRT28Q7Z3Y7 464 aa25.18■■□□□ 1.62
CLN3-216ENST00000565316 PHF8Q9UPP1 1060 aa25.18■■□□□ 1.62
CLN3-216ENST00000565316 STAC3Q96MF2 364 aa25.17■■□□□ 1.62
CLN3-216ENST00000565316 SAFB2Q14151 953 aaKnown RBP eCLIP25.15■■□□□ 1.62
CLN3-216ENST00000565316 POGKQ9P215 609 aa25.15■■□□□ 1.62
CLN3-216ENST00000565316 MARF1Q9Y4F3 1742 aaKnown RBP25.15■■□□□ 1.62
CLN3-216ENST00000565316 PSME1Q06323 249 aa25.13■■□□□ 1.61
CLN3-216ENST00000565316 DCAF11Q8TEB1 546 aa25.13■■□□□ 1.61
CLN3-216ENST00000565316 ANKARQ7Z5J8 1434 aa25.13■■□□□ 1.61
CLN3-216ENST00000565316 ADGRB2O60241 1585 aa25.13■■□□□ 1.61
CLN3-216ENST00000565316 TNS3Q68CZ2 1445 aa25.12■■□□□ 1.61
CLN3-216ENST00000565316 RGPD8O14715 1765 aaPredicted RBP25.12■■□□□ 1.61
CLN3-216ENST00000565316 SBNO1A3KN83 1393 aa25.12■■□□□ 1.61
CLN3-216ENST00000565316 KDM2AQ9Y2K7 1162 aa25.12■■□□□ 1.61
CLN3-216ENST00000565316 TRAK1Q9UPV9 953 aa25.11■■□□□ 1.61
CLN3-216ENST00000565316 ATAD2Q6PL18 1390 aa25.1■■□□□ 1.61
CLN3-216ENST00000565316 SLIT2O94813 1529 aa25.09■■□□□ 1.61
CLN3-216ENST00000565316 USP32Q8NFA0 1604 aa25.09■■□□□ 1.61
CLN3-216ENST00000565316 UNC5CLQ8IV45 518 aa25.08■■□□□ 1.6
CLN3-216ENST00000565316 GJD4Q96KN9 370 aaPredicted RBP25.08■■□□□ 1.6
CLN3-216ENST00000565316 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.06■■□□□ 1.6
CLN3-216ENST00000565316 ARHGEF10O15013 1369 aa25.06■■□□□ 1.6
CLN3-216ENST00000565316 HIRIP3Q9BW71 556 aaPredicted RBP25.05■■□□□ 1.6
CLN3-216ENST00000565316 PMFBP1Q8TBY8 1022 aa25.04■■□□□ 1.6
CLN3-216ENST00000565316 MINK1Q8N4C8 1332 aaPredicted RBP25.04■■□□□ 1.6
CLN3-216ENST00000565316 EIF3AQ14152 1382 aaKnown RBP25.04■■□□□ 1.6
CLN3-216ENST00000565316 WASLO00401 505 aaPredicted RBP25.03■■□□□ 1.6
CLN3-216ENST00000565316 CABLES1Q8TDN4 633 aa25.03■■□□□ 1.6
CLN3-216ENST00000565316 PRR36Q9H6K5 1346 aa25.03■■□□□ 1.6
CLN3-216ENST00000565316 TULP4Q9NRJ4 1543 aa25.01■■□□□ 1.59
CLN3-216ENST00000565316 RALGAPBQ86X10 1494 aa25.01■■□□□ 1.59
CLN3-216ENST00000565316 EP400Q96L91 3159 aa25■■□□□ 1.59
CLN3-216ENST00000565316 HAP1P54257 671 aaPredicted RBP24.99■■□□□ 1.59
CLN3-216ENST00000565316 GLI3P10071 1580 aa24.99■■□□□ 1.59
CLN3-216ENST00000565316 LMOD2Q6P5Q4 547 aa24.98■■□□□ 1.59
CLN3-216ENST00000565316 TRPM3Q9HCF6 1732 aaPredicted RBP24.97■■□□□ 1.59
CLN3-216ENST00000565316 VPS72Q15906 364 aa24.97■■□□□ 1.59
CLN3-216ENST00000565316 GPRASP1Q5JY77 1395 aa24.97■■□□□ 1.59
CLN3-216ENST00000565316 ABCA3Q99758 1704 aa24.96■■□□□ 1.59
CLN3-216ENST00000565316 ARHGEF28Q8N1W1 1705 aaKnown RBP24.94■■□□□ 1.58
CLN3-216ENST00000565316 FAM83GA6ND36 823 aa24.94■■□□□ 1.58
CLN3-216ENST00000565316 CCDC125Q86Z20 511 aa24.94■■□□□ 1.58
CLN3-216ENST00000565316 NWD2Q9ULI1 1742 aa24.94■■□□□ 1.58
CLN3-216ENST00000565316 ALS2Q96Q42 1657 aa24.93■■□□□ 1.58
CLN3-216ENST00000565316 ONECUT3O60422 494 aaPredicted RBP24.92■■□□□ 1.58
CLN3-216ENST00000565316 PLEKHG5O94827 1062 aa24.92■■□□□ 1.58
CLN3-216ENST00000565316 PLCH1Q4KWH8 1693 aa24.92■■□□□ 1.58
CLN3-216ENST00000565316 ATP7BP35670 1465 aa24.9■■□□□ 1.58
CLN3-216ENST00000565316 NGDNQ8NEJ9 315 aaKnown RBP24.9■■□□□ 1.58
CLN3-216ENST00000565316 NUDT16Q96DE0 195 aaKnown RBP24.9■■□□□ 1.58
CLN3-216ENST00000565316 KIAA1210Q9ULL0 1709 aa24.89■■□□□ 1.58
CLN3-216ENST00000565316 SEPT12Q8IYM1 358 aa24.88■■□□□ 1.57
CLN3-216ENST00000565316 CDK19Q9BWU1 502 aa24.86■■□□□ 1.57
CLN3-216ENST00000565316 NBPF1Q3BBV0 1214 aa24.85■■□□□ 1.57
CLN3-216ENST00000565316 ITSN1Q15811 1721 aa24.84■■□□□ 1.57
CLN3-216ENST00000565316 BTG4Q9NY30 223 aa24.84■■□□□ 1.57
CLN3-216ENST00000565316 CCDC9Q9Y3X0 531 aaKnown RBP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms