RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KNSTRNQ9Y448 316 aa29.04■■■□□ 2.24
CLN3-209ENST00000561689 TBX22Q9Y458 520 aa29.04■■■□□ 2.24
CLN3-209ENST00000561689 PUS7Q96PZ0 661 aaKnown RBP29.03■■■□□ 2.24
CLN3-209ENST00000561689 KTN1Q86UP2 1357 aaKnown RBP29.03■■■□□ 2.24
CLN3-209ENST00000561689 TECPR2O15040 1411 aa29.02■■■□□ 2.24
CLN3-209ENST00000561689 RALBP1Q15311 655 aa29.01■■■□□ 2.23
CLN3-209ENST00000561689 SIRT1Q96EB6 747 aa29.01■■■□□ 2.23
CLN3-209ENST00000561689 MRS2Q9HD23 443 aa29.01■■■□□ 2.23
CLN3-209ENST00000561689 CDK19Q9BWU1 502 aa28.99■■■□□ 2.23
CLN3-209ENST00000561689 ROBO2Q9HCK4 1378 aa28.99■■■□□ 2.23
CLN3-209ENST00000561689 PTPRUQ92729 1446 aa28.99■■■□□ 2.23
CLN3-209ENST00000561689 CARD14Q9BXL6 1004 aa28.99■■■□□ 2.23
CLN3-209ENST00000561689 FAM135BQ49AJ0 1406 aa28.98■■■□□ 2.23
CLN3-209ENST00000561689 CENPBP07199 599 aaPredicted RBP28.98■■■□□ 2.23
CLN3-209ENST00000561689 PARD3Q8TEW0 1356 aa28.97■■■□□ 2.23
CLN3-209ENST00000561689 AMER1Q5JTC6 1135 aaPredicted RBP28.97■■■□□ 2.23
CLN3-209ENST00000561689 AMOTL2Q9Y2J4 779 aa28.97■■■□□ 2.23
CLN3-209ENST00000561689 CPS1P31327 1500 aa28.96■■■□□ 2.23
CLN3-209ENST00000561689 KNDC1Q76NI1 1749 aa28.95■■■□□ 2.22
CLN3-209ENST00000561689 MYBBP1AQ9BQG0 1328 aaKnown RBP28.94■■■□□ 2.22
CLN3-209ENST00000561689 KDM4FA0A1W2PPD8 638 aa28.93■■■□□ 2.22
CLN3-209ENST00000561689 DIP2AQ14689 1571 aa28.92■■■□□ 2.22
CLN3-209ENST00000561689 SCAF1Q9H7N4 1312 aaKnown RBP28.92■■■□□ 2.22
CLN3-209ENST00000561689 ATAD2Q6PL18 1390 aa28.91■■■□□ 2.22
CLN3-209ENST00000561689 WASLO00401 505 aaPredicted RBP28.89■■■□□ 2.22
CLN3-209ENST00000561689 FAM9BQ8IZU0 186 aa28.87■■■□□ 2.21
CLN3-209ENST00000561689 NSD3Q9BZ95 1437 aa28.87■■■□□ 2.21
CLN3-209ENST00000561689 NCKAP5LQ9HCH0 1330 aa28.87■■■□□ 2.21
CLN3-209ENST00000561689 ANKRD36BQ8N2N9 1353 aa28.86■■■□□ 2.21
CLN3-209ENST00000561689 NINLQ9Y2I6 1382 aa28.85■■■□□ 2.21
CLN3-209ENST00000561689 NPC1L1Q9UHC9 1359 aa28.85■■■□□ 2.21
CLN3-209ENST00000561689 KCNA6P17658 529 aa28.84■■■□□ 2.21
CLN3-209ENST00000561689 NLRP13Q86W25 1043 aa28.84■■■□□ 2.21
CLN3-209ENST00000561689 CABP1Q9NZU7 370 aa28.84■■■□□ 2.21
CLN3-209ENST00000561689 NPHP4O75161 1426 aaPredicted RBP28.83■■■□□ 2.21
CLN3-209ENST00000561689 PIK3R4Q99570 1358 aa28.83■■■□□ 2.21
CLN3-209ENST00000561689 BRD4O60885 1362 aaPredicted RBP28.82■■■□□ 2.2
CLN3-209ENST00000561689 PTCH1Q13635 1447 aa28.82■■■□□ 2.2
CLN3-209ENST00000561689 A0A1W2PP64 1363 aa28.81■■■□□ 2.2
CLN3-209ENST00000561689 TERF2IPQ9NYB0 399 aa28.79■■■□□ 2.2
CLN3-209ENST00000561689 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.78■■■□□ 2.2
CLN3-209ENST00000561689 NUDT16Q96DE0 195 aaKnown RBP28.78■■■□□ 2.2
CLN3-209ENST00000561689 XRN1Q8IZH2 1706 aaKnown RBP28.77■■■□□ 2.2
CLN3-209ENST00000561689 CD163L1Q9NR16 1453 aa28.77■■■□□ 2.2
CLN3-209ENST00000561689 PPP2R1AP30153 589 aa28.76■■■□□ 2.19
CLN3-209ENST00000561689 PNISRQ8TF01 805 aaKnown RBP28.76■■■□□ 2.19
CLN3-209ENST00000561689 CGNL1Q0VF96 1302 aa28.75■■■□□ 2.19
CLN3-209ENST00000561689 HSPA2P54652 639 aa28.75■■■□□ 2.19
CLN3-209ENST00000561689 HDGFL2Q7Z4V5 671 aaPredicted RBP28.75■■■□□ 2.19
CLN3-209ENST00000561689 HNRNPUQ00839 825 aaKnown RBP eCLIP28.73■■■□□ 2.19
CLN3-209ENST00000561689 CCDC61Q9Y6R9 512 aa28.73■■■□□ 2.19
CLN3-209ENST00000561689 PPIP5K1Q6PFW1 1433 aa28.72■■■□□ 2.19
CLN3-209ENST00000561689 PRR36Q9H6K5 1346 aa28.72■■■□□ 2.19
CLN3-209ENST00000561689 NUTM2FA1L443 756 aa28.72■■■□□ 2.19
CLN3-209ENST00000561689 ADGRB2O60241 1585 aa28.72■■■□□ 2.19
CLN3-209ENST00000561689 MORC1Q86VD1 984 aa28.7■■■□□ 2.18
CLN3-209ENST00000561689 ATP7BP35670 1465 aa28.68■■■□□ 2.18
CLN3-209ENST00000561689 RBM33Q96EV2 1170 aaKnown RBP28.68■■■□□ 2.18
CLN3-209ENST00000561689 USP32Q8NFA0 1604 aa28.67■■■□□ 2.18
CLN3-209ENST00000561689 TNNT2P45379 298 aaPredicted RBP28.66■■■□□ 2.18
CLN3-209ENST00000561689 CHD2O14647 1828 aaKnown RBP28.66■■■□□ 2.18
CLN3-209ENST00000561689 NSD2O96028 1365 aa28.63■■■□□ 2.17
CLN3-209ENST00000561689 GGNBP2Q9H3C7 697 aa28.63■■■□□ 2.17
CLN3-209ENST00000561689 CPSF1Q10570 1443 aaKnown RBP28.63■■■□□ 2.17
CLN3-209ENST00000561689 FYB1O15117 783 aa28.62■■■□□ 2.17
CLN3-209ENST00000561689 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.61■■■□□ 2.17
CLN3-209ENST00000561689 LMTK3Q96Q04 1460 aa28.61■■■□□ 2.17
CLN3-209ENST00000561689 CDC42BPGQ6DT37 1551 aa28.58■■■□□ 2.17
CLN3-209ENST00000561689 PLEKHG3A1L390 1219 aa28.57■■■□□ 2.16
CLN3-209ENST00000561689 ACEP12821 1306 aa28.55■■■□□ 2.16
CLN3-209ENST00000561689 ZNF692Q9BU19 519 aaPredicted RBP28.55■■■□□ 2.16
CLN3-209ENST00000561689 EDC4Q6P2E9 1401 aaKnown RBP28.54■■■□□ 2.16
CLN3-209ENST00000561689 SENP3-EIF4A1A0A087X0R7 540 aa28.53■■■□□ 2.16
CLN3-209ENST00000561689 C14orf37Q86TY3 774 aa28.53■■■□□ 2.16
CLN3-209ENST00000561689 PMFBP1Q8TBY8 1022 aa28.53■■■□□ 2.16
CLN3-209ENST00000561689 GTF3C3Q9Y5Q9 886 aa28.53■■■□□ 2.16
CLN3-209ENST00000561689 NKTRP30414 1462 aaKnown RBP28.52■■■□□ 2.16
CLN3-209ENST00000561689 TOPAZ1Q8N9V7 1692 aa28.52■■■□□ 2.16
CLN3-209ENST00000561689 PROSER2Q86WR7 435 aaPredicted RBP28.51■■■□□ 2.16
CLN3-209ENST00000561689 NWD1Q149M9 1564 aa28.51■■■□□ 2.16
CLN3-209ENST00000561689 NME9Q86XW9 330 aa28.5■■■□□ 2.15
CLN3-209ENST00000561689 ADGRL3Q9HAR2 1447 aa28.5■■■□□ 2.15
CLN3-209ENST00000561689 NALCNQ8IZF0 1738 aa28.5■■■□□ 2.15
CLN3-209ENST00000561689 MTHFSP49914 203 aa28.5■■■□□ 2.15
CLN3-209ENST00000561689 ADAMTS8Q9UP79 889 aa28.49■■■□□ 2.15
CLN3-209ENST00000561689 WDR43Q15061 677 aaKnown RBP eCLIP28.48■■■□□ 2.15
CLN3-209ENST00000561689 ANKARQ7Z5J8 1434 aa28.48■■■□□ 2.15
CLN3-209ENST00000561689 ZBED9Q6R2W3 1325 aa28.48■■■□□ 2.15
CLN3-209ENST00000561689 ZRANB1Q9UGI0 708 aa28.47■■■□□ 2.15
CLN3-209ENST00000561689 NGDNQ8NEJ9 315 aaKnown RBP28.46■■■□□ 2.15
CLN3-209ENST00000561689 POLR3AO14802 1390 aaPredicted RBP28.46■■■□□ 2.15
CLN3-209ENST00000561689 ITSN1Q15811 1721 aa28.45■■■□□ 2.14
CLN3-209ENST00000561689 AKAP12Q02952 1782 aa28.44■■■□□ 2.14
CLN3-209ENST00000561689 MON2Q7Z3U7 1717 aa28.44■■■□□ 2.14
CLN3-209ENST00000561689 FMN2Q9NZ56 1722 aa28.44■■■□□ 2.14
CLN3-209ENST00000561689 USP6P35125 1406 aa28.44■■■□□ 2.14
CLN3-209ENST00000561689 TTC21BQ7Z4L5 1316 aa28.43■■■□□ 2.14
CLN3-209ENST00000561689 KIF20BQ96Q89 1820 aa28.43■■■□□ 2.14
CLN3-209ENST00000561689 RGPD8O14715 1765 aaPredicted RBP28.42■■■□□ 2.14
CLN3-209ENST00000561689 STRCQ7RTU9 1775 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms