RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 NINLQ9Y2I6 1382 aa18.72■□□□□ 0.59
TPM1-215ENST00000558868 LTKP29376 864 aa18.72■□□□□ 0.59
TPM1-215ENST00000558868 TECPR2O15040 1411 aa18.72■□□□□ 0.59
TPM1-215ENST00000558868 SETD1BQ9UPS6 1966 aaKnown RBP18.72■□□□□ 0.59
TPM1-215ENST00000558868 BRD4O60885 1362 aaPredicted RBP18.71■□□□□ 0.59
TPM1-215ENST00000558868 TULP4Q9NRJ4 1543 aa18.71■□□□□ 0.59
TPM1-215ENST00000558868 FAM135BQ49AJ0 1406 aa18.71■□□□□ 0.59
TPM1-215ENST00000558868 ADAMTS13Q76LX8 1427 aa18.71■□□□□ 0.59
TPM1-215ENST00000558868 METP08581 1390 aa18.7■□□□□ 0.58
TPM1-215ENST00000558868 ZNF142P52746 1687 aaPredicted RBP18.7■□□□□ 0.58
TPM1-215ENST00000558868 DIP2AQ14689 1571 aa18.7■□□□□ 0.58
TPM1-215ENST00000558868 ATAD2Q6PL18 1390 aa18.69■□□□□ 0.58
TPM1-215ENST00000558868 CNGB1Q14028 1251 aaPredicted RBP18.69■□□□□ 0.58
TPM1-215ENST00000558868 TBX22Q9Y458 520 aa18.69■□□□□ 0.58
TPM1-215ENST00000558868 MED1Q15648 1581 aaPredicted RBP18.68■□□□□ 0.58
TPM1-215ENST00000558868 SAFB2Q14151 953 aaKnown RBP eCLIP18.68■□□□□ 0.58
TPM1-215ENST00000558868 NLRP13Q86W25 1043 aa18.68■□□□□ 0.58
TPM1-215ENST00000558868 TMC1Q8TDI8 760 aa18.68■□□□□ 0.58
TPM1-215ENST00000558868 MED14O60244 1454 aa18.68■□□□□ 0.58
TPM1-215ENST00000558868 CPS1P31327 1500 aa18.68■□□□□ 0.58
TPM1-215ENST00000558868 SRPK2P78362 688 aaKnown RBP18.67■□□□□ 0.58
TPM1-215ENST00000558868 MINK1Q8N4C8 1332 aaPredicted RBP18.67■□□□□ 0.58
TPM1-215ENST00000558868 AMER1Q5JTC6 1135 aaPredicted RBP18.66■□□□□ 0.58
TPM1-215ENST00000558868 CC2D1BQ5T0F9 858 aaKnown RBP18.66■□□□□ 0.58
TPM1-215ENST00000558868 STRCQ7RTU9 1775 aa18.65■□□□□ 0.58
TPM1-215ENST00000558868 CCDC184Q52MB2 194 aa18.65■□□□□ 0.58
TPM1-215ENST00000558868 ANKLE2Q86XL3 938 aa18.64■□□□□ 0.57
TPM1-215ENST00000558868 PHF23Q9BUL5 403 aaPredicted RBP18.64■□□□□ 0.57
TPM1-215ENST00000558868 CABP2Q9NPB3 220 aa18.64■□□□□ 0.57
TPM1-215ENST00000558868 CDK19Q9BWU1 502 aa18.63■□□□□ 0.57
TPM1-215ENST00000558868 SLC12A5Q9H2X9 1139 aa18.63■□□□□ 0.57
TPM1-215ENST00000558868 ANKRD36BQ8N2N9 1353 aa18.63■□□□□ 0.57
TPM1-215ENST00000558868 WAPLQ7Z5K2 1190 aa18.62■□□□□ 0.57
TPM1-215ENST00000558868 FAM9BQ8IZU0 186 aa18.62■□□□□ 0.57
TPM1-215ENST00000558868 PIK3R4Q99570 1358 aa18.62■□□□□ 0.57
TPM1-215ENST00000558868 CARD14Q9BXL6 1004 aa18.61■□□□□ 0.57
TPM1-215ENST00000558868 TERF2IPQ9NYB0 399 aa18.61■□□□□ 0.57
TPM1-215ENST00000558868 USP32Q8NFA0 1604 aa18.6■□□□□ 0.57
TPM1-215ENST00000558868 PLEKHH1Q9ULM0 1364 aa18.6■□□□□ 0.57
TPM1-215ENST00000558868 SLC26A8Q96RN1 970 aa18.6■□□□□ 0.57
TPM1-215ENST00000558868 NSD3Q9BZ95 1437 aa18.59■□□□□ 0.57
TPM1-215ENST00000558868 PNISRQ8TF01 805 aaKnown RBP18.59■□□□□ 0.57
TPM1-215ENST00000558868 NSD2O96028 1365 aa18.58■□□□□ 0.57
TPM1-215ENST00000558868 CGNL1Q0VF96 1302 aa18.58■□□□□ 0.57
TPM1-215ENST00000558868 WASLO00401 505 aaPredicted RBP18.58■□□□□ 0.56
TPM1-215ENST00000558868 HNRNPUQ00839 825 aaKnown RBP eCLIP18.58■□□□□ 0.56
TPM1-215ENST00000558868 PTCH1Q13635 1447 aa18.57■□□□□ 0.56
TPM1-215ENST00000558868 ROBO2Q9HCK4 1378 aa18.57■□□□□ 0.56
TPM1-215ENST00000558868 HDGFL2Q7Z4V5 671 aaPredicted RBP18.57■□□□□ 0.56
TPM1-215ENST00000558868 AMOTL2Q9Y2J4 779 aa18.57■□□□□ 0.56
TPM1-215ENST00000558868 ADGRB2O60241 1585 aa18.55■□□□□ 0.56
TPM1-215ENST00000558868 PPP2R1AP30153 589 aa18.55■□□□□ 0.56
TPM1-215ENST00000558868 PTPRUQ92729 1446 aa18.55■□□□□ 0.56
TPM1-215ENST00000558868 LTBP4Q8N2S1 1624 aa18.54■□□□□ 0.56
TPM1-215ENST00000558868 INSRP06213 1382 aa18.54■□□□□ 0.56
TPM1-215ENST00000558868 ATP7BP35670 1465 aa18.53■□□□□ 0.56
TPM1-215ENST00000558868 A0A1W2PP64 1363 aa18.53■□□□□ 0.56
TPM1-215ENST00000558868 MORC1Q86VD1 984 aa18.52■□□□□ 0.56
TPM1-215ENST00000558868 XRN1Q8IZH2 1706 aaKnown RBP18.52■□□□□ 0.55
TPM1-215ENST00000558868 CABP1Q9NZU7 370 aa18.51■□□□□ 0.55
TPM1-215ENST00000558868 NPHP4O75161 1426 aaPredicted RBP18.5■□□□□ 0.55
TPM1-215ENST00000558868 ZBED9Q6R2W3 1325 aa18.49■□□□□ 0.55
TPM1-215ENST00000558868 NUDT16Q96DE0 195 aaKnown RBP18.49■□□□□ 0.55
TPM1-215ENST00000558868 CCDC61Q9Y6R9 512 aa18.49■□□□□ 0.55
TPM1-215ENST00000558868 CD163L1Q9NR16 1453 aa18.48■□□□□ 0.55
TPM1-215ENST00000558868 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.48■□□□□ 0.55
TPM1-215ENST00000558868 PPIP5K1Q6PFW1 1433 aa18.48■□□□□ 0.55
TPM1-215ENST00000558868 IQSEC2Q5JU85 1478 aa18.46■□□□□ 0.55
TPM1-215ENST00000558868 CHD2O14647 1828 aaKnown RBP18.45■□□□□ 0.54
TPM1-215ENST00000558868 WDR43Q15061 677 aaKnown RBP eCLIP18.45■□□□□ 0.54
TPM1-215ENST00000558868 ZNF692Q9BU19 519 aaPredicted RBP18.45■□□□□ 0.54
TPM1-215ENST00000558868 CDC42BPGQ6DT37 1551 aa18.44■□□□□ 0.54
TPM1-215ENST00000558868 CPSF1Q10570 1443 aaKnown RBP18.44■□□□□ 0.54
TPM1-215ENST00000558868 EDC4Q6P2E9 1401 aaKnown RBP18.43■□□□□ 0.54
TPM1-215ENST00000558868 KCNA6P17658 529 aa18.43■□□□□ 0.54
TPM1-215ENST00000558868 POLR3AO14802 1390 aaPredicted RBP18.42■□□□□ 0.54
TPM1-215ENST00000558868 ANKRD26Q9UPS8 1709 aa18.42■□□□□ 0.54
TPM1-215ENST00000558868 PLEKHG3A1L390 1219 aa18.41■□□□□ 0.54
TPM1-215ENST00000558868 CFAP53Q96M91 514 aa18.41■□□□□ 0.54
TPM1-215ENST00000558868 GTF3C3Q9Y5Q9 886 aa18.41■□□□□ 0.54
TPM1-215ENST00000558868 FYB1O15117 783 aa18.4■□□□□ 0.54
TPM1-215ENST00000558868 PRR36Q9H6K5 1346 aa18.4■□□□□ 0.54
TPM1-215ENST00000558868 NCKAP5LQ9HCH0 1330 aa18.4■□□□□ 0.54
TPM1-215ENST00000558868 TOPAZ1Q8N9V7 1692 aa18.4■□□□□ 0.54
TPM1-215ENST00000558868 ITSN1Q15811 1721 aa18.4■□□□□ 0.54
TPM1-215ENST00000558868 BLMP54132 1417 aaPredicted RBP18.4■□□□□ 0.54
TPM1-215ENST00000558868 ANKARQ7Z5J8 1434 aa18.4■□□□□ 0.54
TPM1-215ENST00000558868 KIF20BQ96Q89 1820 aa18.39■□□□□ 0.54
TPM1-215ENST00000558868 AKAP12Q02952 1782 aa18.38■□□□□ 0.53
TPM1-215ENST00000558868 MON2Q7Z3U7 1717 aa18.37■□□□□ 0.53
TPM1-215ENST00000558868 GGNBP2Q9H3C7 697 aa18.37■□□□□ 0.53
TPM1-215ENST00000558868 DMRT2Q9Y5R5 561 aa18.37■□□□□ 0.53
TPM1-215ENST00000558868 SCAF1Q9H7N4 1312 aaKnown RBP18.37■□□□□ 0.53
TPM1-215ENST00000558868 UBAP1LF5GYI3 381 aa18.36■□□□□ 0.53
TPM1-215ENST00000558868 NWD1Q149M9 1564 aa18.36■□□□□ 0.53
TPM1-215ENST00000558868 TNNT2P45379 298 aaPredicted RBP18.35■□□□□ 0.53
TPM1-215ENST00000558868 ADAMTS8Q9UP79 889 aa18.35■□□□□ 0.53
TPM1-215ENST00000558868 MTHFSP49914 203 aa18.34■□□□□ 0.53
TPM1-215ENST00000558868 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.34■□□□□ 0.53
TPM1-215ENST00000558868 ACEP12821 1306 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms