RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 HNRNPUQ00839 825 aaKnown RBP eCLIP19.97■□□□□ 0.79
VPS33B-205ENST00000556096 TMC1Q8TDI8 760 aa19.97■□□□□ 0.79
VPS33B-205ENST00000556096 NPC1L1Q9UHC9 1359 aa19.97■□□□□ 0.79
VPS33B-205ENST00000556096 ADAMTS13Q76LX8 1427 aa19.96■□□□□ 0.79
VPS33B-205ENST00000556096 NLRP13Q86W25 1043 aa19.96■□□□□ 0.79
VPS33B-205ENST00000556096 EVC2Q86UK5 1308 aa19.94■□□□□ 0.78
VPS33B-205ENST00000556096 AMER1Q5JTC6 1135 aaPredicted RBP19.94■□□□□ 0.78
VPS33B-205ENST00000556096 PNISRQ8TF01 805 aaKnown RBP19.94■□□□□ 0.78
VPS33B-205ENST00000556096 DMRT2Q9Y5R5 561 aa19.93■□□□□ 0.78
VPS33B-205ENST00000556096 CC2D1BQ5T0F9 858 aaKnown RBP19.93■□□□□ 0.78
VPS33B-205ENST00000556096 STK26Q9P289 416 aa19.93■□□□□ 0.78
VPS33B-205ENST00000556096 METP08581 1390 aa19.92■□□□□ 0.78
VPS33B-205ENST00000556096 DIP2AQ14689 1571 aa19.92■□□□□ 0.78
VPS33B-205ENST00000556096 DLC1Q96QB1 1528 aa19.92■□□□□ 0.78
VPS33B-205ENST00000556096 KNDC1Q76NI1 1749 aa19.91■□□□□ 0.78
VPS33B-205ENST00000556096 TULP4Q9NRJ4 1543 aa19.91■□□□□ 0.78
VPS33B-205ENST00000556096 LRPPRCP42704 1394 aaKnown RBP19.91■□□□□ 0.78
VPS33B-205ENST00000556096 ZNF335Q9H4Z2 1342 aaPredicted RBP19.91■□□□□ 0.78
VPS33B-205ENST00000556096 ABCC11Q96J66 1382 aa19.89■□□□□ 0.77
VPS33B-205ENST00000556096 PRAM1Q96QH2 718 aa19.88■□□□□ 0.77
VPS33B-205ENST00000556096 POGKQ9P215 609 aa19.88■□□□□ 0.77
VPS33B-205ENST00000556096 CARD14Q9BXL6 1004 aa19.87■□□□□ 0.77
VPS33B-205ENST00000556096 ZBED9Q6R2W3 1325 aa19.86■□□□□ 0.77
VPS33B-205ENST00000556096 TBX22Q9Y458 520 aa19.85■□□□□ 0.77
VPS33B-205ENST00000556096 CPS1P31327 1500 aa19.85■□□□□ 0.77
VPS33B-205ENST00000556096 NINLQ9Y2I6 1382 aa19.85■□□□□ 0.77
VPS33B-205ENST00000556096 STRCP1A6NGW2 1772 aa19.85■□□□□ 0.77
VPS33B-205ENST00000556096 SIRT1Q96EB6 747 aa19.85■□□□□ 0.77
VPS33B-205ENST00000556096 SLC12A5Q9H2X9 1139 aa19.85■□□□□ 0.77
VPS33B-205ENST00000556096 TECPR2O15040 1411 aa19.83■□□□□ 0.77
VPS33B-205ENST00000556096 PTPRUQ92729 1446 aa19.83■□□□□ 0.77
VPS33B-205ENST00000556096 SAFB2Q14151 953 aaKnown RBP eCLIP19.83■□□□□ 0.77
VPS33B-205ENST00000556096 INSRP06213 1382 aa19.83■□□□□ 0.76
VPS33B-205ENST00000556096 RBM33Q96EV2 1170 aaKnown RBP19.82■□□□□ 0.76
VPS33B-205ENST00000556096 XRN1Q8IZH2 1706 aaKnown RBP19.82■□□□□ 0.76
VPS33B-205ENST00000556096 CHD2O14647 1828 aaKnown RBP19.82■□□□□ 0.76
VPS33B-205ENST00000556096 PPP2R1AP30153 589 aa19.82■□□□□ 0.76
VPS33B-205ENST00000556096 ATAD2Q6PL18 1390 aa19.81■□□□□ 0.76
VPS33B-205ENST00000556096 CABP2Q9NPB3 220 aa19.81■□□□□ 0.76
VPS33B-205ENST00000556096 MINK1Q8N4C8 1332 aaPredicted RBP19.81■□□□□ 0.76
VPS33B-205ENST00000556096 ANKRD36BQ8N2N9 1353 aa19.81■□□□□ 0.76
VPS33B-205ENST00000556096 USP32Q8NFA0 1604 aa19.8■□□□□ 0.76
VPS33B-205ENST00000556096 AMOTL2Q9Y2J4 779 aa19.79■□□□□ 0.76
VPS33B-205ENST00000556096 FAM135BQ49AJ0 1406 aa19.79■□□□□ 0.76
VPS33B-205ENST00000556096 NSD3Q9BZ95 1437 aa19.79■□□□□ 0.76
VPS33B-205ENST00000556096 PLEKHH1Q9ULM0 1364 aa19.79■□□□□ 0.76
VPS33B-205ENST00000556096 KCNA6P17658 529 aa19.79■□□□□ 0.76
VPS33B-205ENST00000556096 SRPK2P78362 688 aaKnown RBP19.79■□□□□ 0.76
VPS33B-205ENST00000556096 WAPLQ7Z5K2 1190 aa19.77■□□□□ 0.76
VPS33B-205ENST00000556096 LTBP4Q8N2S1 1624 aa19.77■□□□□ 0.76
VPS33B-205ENST00000556096 PIK3R4Q99570 1358 aa19.77■□□□□ 0.75
VPS33B-205ENST00000556096 ROBO2Q9HCK4 1378 aa19.77■□□□□ 0.75
VPS33B-205ENST00000556096 CDK19Q9BWU1 502 aa19.76■□□□□ 0.75
VPS33B-205ENST00000556096 NWD1Q149M9 1564 aa19.75■□□□□ 0.75
VPS33B-205ENST00000556096 ILDR1Q86SU0 546 aaPredicted RBP19.74■□□□□ 0.75
VPS33B-205ENST00000556096 PTCH1Q13635 1447 aa19.74■□□□□ 0.75
VPS33B-205ENST00000556096 NSD2O96028 1365 aa19.74■□□□□ 0.75
VPS33B-205ENST00000556096 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.74■□□□□ 0.75
VPS33B-205ENST00000556096 CGNL1Q0VF96 1302 aa19.74■□□□□ 0.75
VPS33B-205ENST00000556096 PROSER2Q86WR7 435 aaPredicted RBP19.73■□□□□ 0.75
VPS33B-205ENST00000556096 TERF2IPQ9NYB0 399 aa19.72■□□□□ 0.75
VPS33B-205ENST00000556096 LRRC7Q96NW7 1537 aa19.71■□□□□ 0.75
VPS33B-205ENST00000556096 A0A1W2PP64 1363 aa19.7■□□□□ 0.74
VPS33B-205ENST00000556096 BLMP54132 1417 aaPredicted RBP19.7■□□□□ 0.74
VPS33B-205ENST00000556096 CD163L1Q9NR16 1453 aa19.69■□□□□ 0.74
VPS33B-205ENST00000556096 TMEM94Q12767 1356 aa19.69■□□□□ 0.74
VPS33B-205ENST00000556096 WASLO00401 505 aaPredicted RBP19.69■□□□□ 0.74
VPS33B-205ENST00000556096 MORC1Q86VD1 984 aa19.69■□□□□ 0.74
VPS33B-205ENST00000556096 FBXO41Q8TF61 875 aa19.69■□□□□ 0.74
VPS33B-205ENST00000556096 ADGRB2O60241 1585 aa19.69■□□□□ 0.74
VPS33B-205ENST00000556096 NKTRP30414 1462 aaKnown RBP19.68■□□□□ 0.74
VPS33B-205ENST00000556096 XIRP1Q702N8 1843 aaKnown RBP19.67■□□□□ 0.74
VPS33B-205ENST00000556096 HDGFL2Q7Z4V5 671 aaPredicted RBP19.67■□□□□ 0.74
VPS33B-205ENST00000556096 SMG6Q86US8 1419 aaKnown RBP19.66■□□□□ 0.74
VPS33B-205ENST00000556096 C14orf37Q86TY3 774 aa19.66■□□□□ 0.74
VPS33B-205ENST00000556096 ATP7BP35670 1465 aa19.66■□□□□ 0.74
VPS33B-205ENST00000556096 POLR3AO14802 1390 aaPredicted RBP19.66■□□□□ 0.74
VPS33B-205ENST00000556096 NALCNQ8IZF0 1738 aa19.66■□□□□ 0.74
VPS33B-205ENST00000556096 WDR43Q15061 677 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS33B-205ENST00000556096 CERKQ8TCT0 537 aa19.65■□□□□ 0.74
VPS33B-205ENST00000556096 CABP1Q9NZU7 370 aa19.65■□□□□ 0.74
VPS33B-205ENST00000556096 SUPT16HQ9Y5B9 1047 aaKnown RBP19.65■□□□□ 0.74
VPS33B-205ENST00000556096 ADAMTS8Q9UP79 889 aa19.65■□□□□ 0.74
VPS33B-205ENST00000556096 NEFLP07196 543 aa19.63■□□□□ 0.73
VPS33B-205ENST00000556096 NUDCQ9Y266 331 aa19.62■□□□□ 0.73
VPS33B-205ENST00000556096 PDE3BQ13370 1112 aa19.61■□□□□ 0.73
VPS33B-205ENST00000556096 NUDT16Q96DE0 195 aaKnown RBP19.6■□□□□ 0.73
VPS33B-205ENST00000556096 CPSF1Q10570 1443 aaKnown RBP19.6■□□□□ 0.73
VPS33B-205ENST00000556096 CCDC61Q9Y6R9 512 aa19.59■□□□□ 0.73
VPS33B-205ENST00000556096 PPIP5K1Q6PFW1 1433 aa19.59■□□□□ 0.73
VPS33B-205ENST00000556096 FYB1O15117 783 aa19.59■□□□□ 0.73
VPS33B-205ENST00000556096 FKBP8Q14318 412 aa19.59■□□□□ 0.73
VPS33B-205ENST00000556096 ANKRD26Q9UPS8 1709 aa19.59■□□□□ 0.73
VPS33B-205ENST00000556096 RGPD8O14715 1765 aaPredicted RBP19.58■□□□□ 0.72
VPS33B-205ENST00000556096 FMN2Q9NZ56 1722 aa19.57■□□□□ 0.72
VPS33B-205ENST00000556096 TOPAZ1Q8N9V7 1692 aa19.57■□□□□ 0.72
VPS33B-205ENST00000556096 CDC42BPGQ6DT37 1551 aa19.56■□□□□ 0.72
VPS33B-205ENST00000556096 TNNT2P45379 298 aaPredicted RBP19.56■□□□□ 0.72
VPS33B-205ENST00000556096 MSH6P52701 1360 aa19.55■□□□□ 0.72
VPS33B-205ENST00000556096 NUTM2FA1L443 756 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms