RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 POLR1AO95602 1720 aaPredicted RBP14.11□□□□□ -0.15
SRP54-208ENST00000555557 STRCQ7RTU9 1775 aa14.11□□□□□ -0.15
SRP54-208ENST00000555557 MIER1Q8N108 512 aa14.11□□□□□ -0.15
SRP54-208ENST00000555557 RBM33Q96EV2 1170 aaKnown RBP14.11□□□□□ -0.15
SRP54-208ENST00000555557 PIK3R4Q99570 1358 aa14.11□□□□□ -0.15
SRP54-208ENST00000555557 FAM135BQ49AJ0 1406 aa14.1□□□□□ -0.15
SRP54-208ENST00000555557 SRPK2P78362 688 aaKnown RBP14.1□□□□□ -0.15
SRP54-208ENST00000555557 CDK19Q9BWU1 502 aa14.09□□□□□ -0.15
SRP54-208ENST00000555557 CPS1P31327 1500 aa14.09□□□□□ -0.15
SRP54-208ENST00000555557 TULP4Q9NRJ4 1543 aa14.09□□□□□ -0.15
SRP54-208ENST00000555557 PANK3Q9H999 370 aa14.08□□□□□ -0.16
SRP54-208ENST00000555557 KNDC1Q76NI1 1749 aa14.08□□□□□ -0.16
SRP54-208ENST00000555557 CNGB1Q14028 1251 aaPredicted RBP14.07□□□□□ -0.16
SRP54-208ENST00000555557 TMC1Q8TDI8 760 aa14.07□□□□□ -0.16
SRP54-208ENST00000555557 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
SRP54-208ENST00000555557 SLC12A5Q9H2X9 1139 aa14.07□□□□□ -0.16
SRP54-208ENST00000555557 WASLO00401 505 aaPredicted RBP14.06□□□□□ -0.16
SRP54-208ENST00000555557 XRN1Q8IZH2 1706 aaKnown RBP14.06□□□□□ -0.16
SRP54-208ENST00000555557 CHD2O14647 1828 aaKnown RBP14.04□□□□□ -0.16
SRP54-208ENST00000555557 NUTM2FA1L443 756 aa14.04□□□□□ -0.16
SRP54-208ENST00000555557 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
SRP54-208ENST00000555557 PER1O15534 1290 aaPredicted RBP14.03□□□□□ -0.16
SRP54-208ENST00000555557 ANP32CO43423 234 aa14.03□□□□□ -0.16
SRP54-208ENST00000555557 PUS7Q96PZ0 661 aaKnown RBP14.03□□□□□ -0.16
SRP54-208ENST00000555557 PROSER2Q86WR7 435 aaPredicted RBP14.02□□□□□ -0.16
SRP54-208ENST00000555557 CABP1Q9NZU7 370 aa14.02□□□□□ -0.17
SRP54-208ENST00000555557 NUDT16Q96DE0 195 aaKnown RBP14.01□□□□□ -0.17
SRP54-208ENST00000555557 CARD14Q9BXL6 1004 aa14.01□□□□□ -0.17
SRP54-208ENST00000555557 ATAD2Q6PL18 1390 aa14□□□□□ -0.17
SRP54-208ENST00000555557 C14orf37Q86TY3 774 aa14□□□□□ -0.17
SRP54-208ENST00000555557 MYOM1P52179 1685 aa14□□□□□ -0.17
SRP54-208ENST00000555557 ZNF335Q9H4Z2 1342 aaPredicted RBP14□□□□□ -0.17
SRP54-208ENST00000555557 PRR36Q9H6K5 1346 aa14□□□□□ -0.17
SRP54-208ENST00000555557 FBXO41Q8TF61 875 aa13.99□□□□□ -0.17
SRP54-208ENST00000555557 PRKRIP1Q9H875 184 aaPredicted RBP13.98□□□□□ -0.17
SRP54-208ENST00000555557 KNSTRNQ9Y448 316 aa13.98□□□□□ -0.17
SRP54-208ENST00000555557 NWD1Q149M9 1564 aa13.98□□□□□ -0.17
SRP54-208ENST00000555557 CC2D1BQ5T0F9 858 aaKnown RBP13.98□□□□□ -0.17
SRP54-208ENST00000555557 CCDC61Q9Y6R9 512 aa13.98□□□□□ -0.17
SRP54-208ENST00000555557 DMRT2Q9Y5R5 561 aa13.97□□□□□ -0.17
SRP54-208ENST00000555557 ADGRB2O60241 1585 aa13.97□□□□□ -0.17
SRP54-208ENST00000555557 STRCP1A6NGW2 1772 aa13.96□□□□□ -0.17
SRP54-208ENST00000555557 TMEM94Q12767 1356 aa13.96□□□□□ -0.17
SRP54-208ENST00000555557 PPIP5K1Q6PFW1 1433 aa13.96□□□□□ -0.18
SRP54-208ENST00000555557 AMER1Q5JTC6 1135 aaPredicted RBP13.95□□□□□ -0.18
SRP54-208ENST00000555557 CERKQ8TCT0 537 aa13.95□□□□□ -0.18
SRP54-208ENST00000555557 A0A1W2PP64 1363 aa13.95□□□□□ -0.18
SRP54-208ENST00000555557 ANKRD36BQ8N2N9 1353 aa13.95□□□□□ -0.18
SRP54-208ENST00000555557 NINLQ9Y2I6 1382 aa13.95□□□□□ -0.18
SRP54-208ENST00000555557 NKTRP30414 1462 aaKnown RBP13.95□□□□□ -0.18
SRP54-208ENST00000555557 ATP7BP35670 1465 aa13.95□□□□□ -0.18
SRP54-208ENST00000555557 ADGRL3Q9HAR2 1447 aa13.94□□□□□ -0.18
SRP54-208ENST00000555557 TERF2IPQ9NYB0 399 aa13.94□□□□□ -0.18
SRP54-208ENST00000555557 CD163L1Q9NR16 1453 aa13.94□□□□□ -0.18
SRP54-208ENST00000555557 NSD3Q9BZ95 1437 aa13.94□□□□□ -0.18
SRP54-208ENST00000555557 PMFBP1Q8TBY8 1022 aa13.94□□□□□ -0.18
SRP54-208ENST00000555557 NALCNQ8IZF0 1738 aa13.93□□□□□ -0.18
SRP54-208ENST00000555557 HDGFL2Q7Z4V5 671 aaPredicted RBP13.93□□□□□ -0.18
SRP54-208ENST00000555557 C19orf44Q9H6X5 657 aa13.93□□□□□ -0.18
SRP54-208ENST00000555557 KTN1Q86UP2 1357 aaKnown RBP13.92□□□□□ -0.18
SRP54-208ENST00000555557 ACEP12821 1306 aa13.91□□□□□ -0.18
SRP54-208ENST00000555557 PLEKHG3A1L390 1219 aa13.9□□□□□ -0.18
SRP54-208ENST00000555557 CCDC184Q52MB2 194 aa13.9□□□□□ -0.18
SRP54-208ENST00000555557 LTBP4Q8N2S1 1624 aa13.9□□□□□ -0.18
SRP54-208ENST00000555557 USP32Q8NFA0 1604 aa13.9□□□□□ -0.18
SRP54-208ENST00000555557 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.9□□□□□ -0.185e-7■■□□□ 13.5
SRP54-208ENST00000555557 CDC42BPGQ6DT37 1551 aa13.89□□□□□ -0.19
SRP54-208ENST00000555557 RALBP1Q15311 655 aa13.89□□□□□ -0.19
SRP54-208ENST00000555557 ESCO1Q5FWF5 840 aa13.89□□□□□ -0.19
SRP54-208ENST00000555557 LRRC7Q96NW7 1537 aa13.89□□□□□ -0.19
SRP54-208ENST00000555557 CPSF1Q10570 1443 aaKnown RBP13.89□□□□□ -0.19
SRP54-208ENST00000555557 CCER2I3L3R5 266 aa13.88□□□□□ -0.19
SRP54-208ENST00000555557 ATF3P18847 181 aa13.88□□□□□ -0.19
SRP54-208ENST00000555557 NGDNQ8NEJ9 315 aaKnown RBP13.88□□□□□ -0.19
SRP54-208ENST00000555557 CGNL1Q0VF96 1302 aa13.88□□□□□ -0.19
SRP54-208ENST00000555557 PARD3Q8TEW0 1356 aa13.88□□□□□ -0.19
SRP54-208ENST00000555557 ANKARQ7Z5J8 1434 aa13.88□□□□□ -0.19
SRP54-208ENST00000555557 ORAI2Q96SN7 254 aa13.88□□□□□ -0.19
SRP54-208ENST00000555557 FMN2Q9NZ56 1722 aa13.87□□□□□ -0.19
SRP54-208ENST00000555557 NCOA3Q9Y6Q9 1424 aa13.87□□□□□ -0.19
SRP54-208ENST00000555557 ZNF692Q9BU19 519 aaPredicted RBP13.87□□□□□ -0.19
SRP54-208ENST00000555557 GGNBP2Q9H3C7 697 aa13.87□□□□□ -0.19
SRP54-208ENST00000555557 RGPD8O14715 1765 aaPredicted RBP13.87□□□□□ -0.19
SRP54-208ENST00000555557 FYB1O15117 783 aa13.86□□□□□ -0.19
SRP54-208ENST00000555557 PHF8Q9UPP1 1060 aa13.86□□□□□ -0.19
SRP54-208ENST00000555557 MSH6P52701 1360 aa13.86□□□□□ -0.19
SRP54-208ENST00000555557 NPC1L1Q9UHC9 1359 aa13.86□□□□□ -0.19
SRP54-208ENST00000555557 TNNT2P45379 298 aaPredicted RBP13.86□□□□□ -0.19
SRP54-208ENST00000555557 MYBBP1AQ9BQG0 1328 aaKnown RBP13.86□□□□□ -0.19
SRP54-208ENST00000555557 TOPAZ1Q8N9V7 1692 aa13.85□□□□□ -0.19
SRP54-208ENST00000555557 CADPS2Q86UW7 1296 aa13.85□□□□□ -0.19
SRP54-208ENST00000555557 MORC1Q86VD1 984 aa13.84□□□□□ -0.19
SRP54-208ENST00000555557 NME9Q86XW9 330 aa13.84□□□□□ -0.19
SRP54-208ENST00000555557 MRS2Q9HD23 443 aa13.84□□□□□ -0.19
SRP54-208ENST00000555557 ZRANB1Q9UGI0 708 aa13.84□□□□□ -0.19
SRP54-208ENST00000555557 POLR3AO14802 1390 aaPredicted RBP13.84□□□□□ -0.19
SRP54-208ENST00000555557 C1orf167Q5SNV9 1468 aa13.83□□□□□ -0.2
SRP54-208ENST00000555557 EDC4Q6P2E9 1401 aaKnown RBP13.83□□□□□ -0.2
SRP54-208ENST00000555557 PPP2R1AP30153 589 aa13.83□□□□□ -0.2
SRP54-208ENST00000555557 XIRP1Q702N8 1843 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms