RNA–Protein interactions for RNA: ENST00000553981.1

SLIRP-202, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-202ENST00000553981 POTECB2RU33 542 aa6.67□□□□□ -1.34
SLIRP-202ENST00000553981 CD46P15529 392 aa6.67□□□□□ -1.34
SLIRP-202ENST00000553981 MAP2K5Q13163 448 aa6.67□□□□□ -1.34
SLIRP-202ENST00000553981 MSS51Q4VC12 460 aa6.67□□□□□ -1.34
SLIRP-202ENST00000553981 LMOD2Q6P5Q4 547 aa6.67□□□□□ -1.34
SLIRP-202ENST00000553981 GRIPAP1Q4V328 841 aa6.66□□□□□ -1.34
SLIRP-202ENST00000553981 ST8SIA5O15466 376 aa6.65□□□□□ -1.34
SLIRP-202ENST00000553981 CD2BP2O95400 341 aaKnown RBP6.65□□□□□ -1.34
SLIRP-202ENST00000553981 AAASQ9NRG9 546 aa6.65□□□□□ -1.34
SLIRP-202ENST00000553981 IRF6O14896 467 aa6.64□□□□□ -1.35
SLIRP-202ENST00000553981 TOR4AQ9NXH8 423 aa6.64□□□□□ -1.35
SLIRP-202ENST00000553981 KDM4AO75164 1064 aa6.63□□□□□ -1.35
SLIRP-202ENST00000553981 MDM2Q00987 491 aaPredicted RBP6.63□□□□□ -1.35
SLIRP-202ENST00000553981 Q3C1V9 767 aa6.63□□□□□ -1.35
SLIRP-202ENST00000553981 MINK1Q8N4C8 1332 aaPredicted RBP6.63□□□□□ -1.35
SLIRP-202ENST00000553981 TULP1O00294 542 aaPredicted RBP6.62□□□□□ -1.35
SLIRP-202ENST00000553981 ZBTB24O43167 697 aaPredicted RBP6.62□□□□□ -1.35
SLIRP-202ENST00000553981 MMP16P51512 607 aa6.62□□□□□ -1.35
SLIRP-202ENST00000553981 VSIG10Q8N0Z9 540 aa6.62□□□□□ -1.35
SLIRP-202ENST00000553981 CYP4X1Q8N118 509 aa6.62□□□□□ -1.35
SLIRP-202ENST00000553981 AVPP01185 164 aa6.61□□□□□ -1.35
SLIRP-202ENST00000553981 CRIPAKQ8N1N5 446 aa6.61□□□□□ -1.35
SLIRP-202ENST00000553981 HLA-CQ95604 372 aa6.61□□□□□ -1.35
SLIRP-202ENST00000553981 CCDC102AQ96A19 550 aa6.61□□□□□ -1.35
SLIRP-202ENST00000553981 USP46P62068 366 aa6.6□□□□□ -1.35
SLIRP-202ENST00000553981 USB1Q9BQ65 265 aaKnown RBP6.6□□□□□ -1.35
SLIRP-202ENST00000553981 DACH1Q9UI36 760 aa6.6□□□□□ -1.35
SLIRP-202ENST00000553981 WNT7AO00755 349 aa6.59□□□□□ -1.35
SLIRP-202ENST00000553981 HOXA2O43364 376 aa6.59□□□□□ -1.35
SLIRP-202ENST00000553981 DXOO77932 396 aaKnown RBP6.59□□□□□ -1.35
SLIRP-202ENST00000553981 TTC24A2A3L6 582 aaPredicted RBP6.58□□□□□ -1.36
SLIRP-202ENST00000553981 GUCA2AQ02747 115 aa6.58□□□□□ -1.36
SLIRP-202ENST00000553981 TRIM32Q13049 653 aa6.58□□□□□ -1.36
SLIRP-202ENST00000553981 GPCPD1Q9NPB8 672 aa6.58□□□□□ -1.36
SLIRP-202ENST00000553981 AXIN1O15169 862 aa6.57□□□□□ -1.36
SLIRP-202ENST00000553981 FAM217BQ9NTX9 383 aaPredicted RBP6.57□□□□□ -1.36
SLIRP-202ENST00000553981 CLCN1P35523 988 aa6.56□□□□□ -1.36
SLIRP-202ENST00000553981 SMCPP49901 116 aaPredicted RBP6.56□□□□□ -1.36
SLIRP-202ENST00000553981 CTC1Q2NKJ3 1217 aa6.56□□□□□ -1.36
SLIRP-202ENST00000553981 SNIP1Q8TAD8 396 aaKnown RBP6.56□□□□□ -1.36
SLIRP-202ENST00000553981 SMPD1P17405 629 aa6.55□□□□□ -1.36
SLIRP-202ENST00000553981 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.55□□□□□ -1.36
SLIRP-202ENST00000553981 CCDC24Q8N4L8 307 aa6.55□□□□□ -1.36
SLIRP-202ENST00000553981 SYMPKQ92797 1274 aaKnown RBP6.55□□□□□ -1.36
SLIRP-202ENST00000553981 MRGPRX2Q96LB1 330 aa6.55□□□□□ -1.36
SLIRP-202ENST00000553981 GMPR2Q9P2T1 348 aaKnown RBP6.55□□□□□ -1.36
SLIRP-202ENST00000553981 SKOR1P84550 965 aa6.54□□□□□ -1.36
SLIRP-202ENST00000553981 REPIN1Q9BWE0 567 aaKnown RBP6.54□□□□□ -1.36
SLIRP-202ENST00000553981 J3QL48 77 aa6.53□□□□□ -1.36
SLIRP-202ENST00000553981 JUNDP17535 347 aa6.53□□□□□ -1.36
SLIRP-202ENST00000553981 LCE2AQ5TA79 106 aaPredicted RBP6.53□□□□□ -1.36
SLIRP-202ENST00000553981 NUTM1Q86Y26 1132 aa6.53□□□□□ -1.36
SLIRP-202ENST00000553981 C11orf95C9JLR9 678 aaPredicted RBP6.52□□□□□ -1.37
SLIRP-202ENST00000553981 RC3H1Q5TC82 1133 aaKnown RBP6.52□□□□□ -1.37
SLIRP-202ENST00000553981 TREML4Q6UXN2 200 aa6.52□□□□□ -1.37
SLIRP-202ENST00000553981 KRI1Q8N9T8 703 aaKnown RBP6.52□□□□□ -1.37
SLIRP-202ENST00000553981 NESP48681 1621 aa6.51□□□□□ -1.37
SLIRP-202ENST00000553981 WNT7BP56706 349 aa6.51□□□□□ -1.37
SLIRP-202ENST00000553981 RETREG3Q86VR2 466 aa6.51□□□□□ -1.37
SLIRP-202ENST00000553981 PCDHGC3Q9UN70 934 aa6.51□□□□□ -1.37
SLIRP-202ENST00000553981 FDX1P10109 184 aa6.5□□□□□ -1.37
SLIRP-202ENST00000553981 SSTR3P32745 418 aaPredicted RBP6.5□□□□□ -1.37
SLIRP-202ENST00000553981 PTCRAQ6ISU1 281 aaPredicted RBP6.5□□□□□ -1.37
SLIRP-202ENST00000553981 HPS1Q92902 700 aa6.5□□□□□ -1.37
SLIRP-202ENST00000553981 NUDT12Q9BQG2 462 aa6.5□□□□□ -1.37
SLIRP-202ENST00000553981 ATP13A2Q9NQ11 1180 aa6.5□□□□□ -1.37
SLIRP-202ENST00000553981 NCAPD3P42695 1498 aa6.49□□□□□ -1.37
SLIRP-202ENST00000553981 CUX2O14529 1486 aa6.48□□□□□ -1.37
SLIRP-202ENST00000553981 ATAD2BQ9ULI0 1458 aa6.48□□□□□ -1.37
SLIRP-202ENST00000553981 C6orf229H3BNL8 230 aa6.48□□□□□ -1.37
SLIRP-202ENST00000553981 BARGINQ6ZT62 677 aa6.48□□□□□ -1.37
SLIRP-202ENST00000553981 SPIRE2Q8WWL2 714 aa6.48□□□□□ -1.37
SLIRP-202ENST00000553981 ZMYND10O75800 440 aa6.47□□□□□ -1.37
SLIRP-202ENST00000553981 NDUFV2P19404 249 aa6.47□□□□□ -1.37
SLIRP-202ENST00000553981 MOXD2PA6NHM9 499 aa6.46□□□□□ -1.38
SLIRP-202ENST00000553981 SIAH2O43255 324 aa6.46□□□□□ -1.38
SLIRP-202ENST00000553981 WFS1O76024 890 aa6.46□□□□□ -1.38
SLIRP-202ENST00000553981 ALDH1A1P00352 501 aa6.46□□□□□ -1.38
SLIRP-202ENST00000553981 MS4A1P11836 297 aa6.46□□□□□ -1.38
SLIRP-202ENST00000553981 SNRPBP14678 240 aaKnown RBP6.46□□□□□ -1.38
SLIRP-202ENST00000553981 NFX1Q12986 1120 aaKnown RBP6.46□□□□□ -1.38
SLIRP-202ENST00000553981 TTLL12Q14166 644 aaPredicted RBP6.46□□□□□ -1.38
SLIRP-202ENST00000553981 AMHR2Q16671 573 aa6.46□□□□□ -1.38
SLIRP-202ENST00000553981 CCNYL3P0C7X3 344 aa6.45□□□□□ -1.38
SLIRP-202ENST00000553981 PTPRNQ16849 979 aa6.45□□□□□ -1.38
SLIRP-202ENST00000553981 GIGYF2Q6Y7W6 1299 aaKnown RBP6.45□□□□□ -1.38
SLIRP-202ENST00000553981 EHBP1Q8NDI1 1231 aa6.45□□□□□ -1.38
SLIRP-202ENST00000553981 ZC3H15Q8WU90 426 aaKnown RBP6.45□□□□□ -1.38
SLIRP-202ENST00000553981 TRIM47Q96LD4 638 aa6.45□□□□□ -1.38
SLIRP-202ENST00000553981 SH3BP2P78314 561 aa6.44□□□□□ -1.38
SLIRP-202ENST00000553981 SENP2Q9HC62 589 aa6.44□□□□□ -1.38
SLIRP-202ENST00000553981 ERCC6Q03468 1493 aa6.43□□□□□ -1.38
SLIRP-202ENST00000553981 PRR7Q8TB68 274 aa6.43□□□□□ -1.38
SLIRP-202ENST00000553981 BEGAINQ9BUH8 593 aa6.43□□□□□ -1.38
SLIRP-202ENST00000553981 UNC93B1Q9H1C4 597 aa6.43□□□□□ -1.38
SLIRP-202ENST00000553981 EVA1BQ9NVM1 165 aa6.43□□□□□ -1.38
SLIRP-202ENST00000553981 THOC2Q8NI27 1593 aaKnown RBP6.43□□□□□ -1.38
SLIRP-202ENST00000553981 SMARCA4P51532 1647 aa6.43□□□□□ -1.38
SLIRP-202ENST00000553981 KCNH2Q12809 1159 aa6.42□□□□□ -1.38
SLIRP-202ENST00000553981 MTMR2Q13614 643 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms