RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 SPATA31E1Q6ZUB1 1445 aa17.05■□□□□ 0.32
NEK3-204ENST00000552973 UPF1Q92900 1129 aaKnown RBP eCLIP17.05■□□□□ 0.32
NEK3-204ENST00000552973 XPCQ01831 940 aaPredicted RBP17.04■□□□□ 0.32
NEK3-204ENST00000552973 ANKRD30BQ9BXX2 1392 aa17.03■□□□□ 0.32
NEK3-204ENST00000552973 PLEKHH1Q9ULM0 1364 aa17.03■□□□□ 0.32
NEK3-204ENST00000552973 PRAG1Q86YV5 1406 aa17.03■□□□□ 0.32
NEK3-204ENST00000552973 FOXO3O43524 673 aa17.02■□□□□ 0.32
NEK3-204ENST00000552973 PPLO60437 1756 aa17.02■□□□□ 0.31
NEK3-204ENST00000552973 LRPPRCP42704 1394 aaKnown RBP17.02■□□□□ 0.31
NEK3-204ENST00000552973 RBM6P78332 1123 aaKnown RBP17■□□□□ 0.31
NEK3-204ENST00000552973 NPHP3Q7Z494 1330 aa16.99■□□□□ 0.31
NEK3-204ENST00000552973 CFAP70Q5T0N1 1121 aa16.99■□□□□ 0.31
NEK3-204ENST00000552973 USP21Q9UK80 565 aa16.99■□□□□ 0.31
NEK3-204ENST00000552973 ABCC11Q96J66 1382 aa16.99■□□□□ 0.31
NEK3-204ENST00000552973 C14orf93Q9H972 538 aaKnown RBP16.98■□□□□ 0.31
NEK3-204ENST00000552973 PIK3C2GO75747 1445 aa16.97■□□□□ 0.31
NEK3-204ENST00000552973 TECPR2O15040 1411 aa16.96■□□□□ 0.31
NEK3-204ENST00000552973 YTHDC2Q9H6S0 1430 aaKnown RBP16.96■□□□□ 0.31
NEK3-204ENST00000552973 SAFB2Q14151 953 aaKnown RBP eCLIP16.96■□□□□ 0.31
NEK3-204ENST00000552973 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
NEK3-204ENST00000552973 RGS12O14924 1447 aa16.95■□□□□ 0.3
NEK3-204ENST00000552973 CDK12Q9NYV4 1490 aaPredicted RBP16.94■□□□□ 0.3
NEK3-204ENST00000552973 FNBP4Q8N3X1 1017 aaPredicted RBP16.94■□□□□ 0.3
NEK3-204ENST00000552973 TRPC5Q9UL62 973 aaPredicted RBP16.94■□□□□ 0.3
NEK3-204ENST00000552973 ACIN1Q9UKV3 1341 aaKnown RBP16.94■□□□□ 0.3
NEK3-204ENST00000552973 CDC42BPGQ6DT37 1551 aa16.94■□□□□ 0.3
NEK3-204ENST00000552973 PLEKHG5O94827 1062 aa16.93■□□□□ 0.3
NEK3-204ENST00000552973 LAMC1P11047 1609 aa16.92■□□□□ 0.3
NEK3-204ENST00000552973 DHX57Q6P158 1386 aaKnown RBP16.92■□□□□ 0.3
NEK3-204ENST00000552973 KRT28Q7Z3Y7 464 aa16.92■□□□□ 0.3
NEK3-204ENST00000552973 SIRT1Q96EB6 747 aa16.92■□□□□ 0.3
NEK3-204ENST00000552973 PRAM1Q96QH2 718 aa16.92■□□□□ 0.3
NEK3-204ENST00000552973 KDM2AQ9Y2K7 1162 aa16.92■□□□□ 0.3
NEK3-204ENST00000552973 PXDNQ92626 1479 aa16.92■□□□□ 0.3
NEK3-204ENST00000552973 POGKQ9P215 609 aa16.9■□□□□ 0.3
NEK3-204ENST00000552973 MYOM2P54296 1465 aa16.89■□□□□ 0.29
NEK3-204ENST00000552973 PHF8Q9UPP1 1060 aa16.89■□□□□ 0.29
NEK3-204ENST00000552973 IFT172Q9UG01 1749 aa16.89■□□□□ 0.29
NEK3-204ENST00000552973 SPATA31A3Q5VYP0 1347 aa16.89■□□□□ 0.29
NEK3-204ENST00000552973 TRAK1Q9UPV9 953 aa16.88■□□□□ 0.29
NEK3-204ENST00000552973 NRXN1Q9ULB1 1477 aa16.87■□□□□ 0.29
NEK3-204ENST00000552973 LMOD2Q6P5Q4 547 aa16.87■□□□□ 0.29
NEK3-204ENST00000552973 DCAF11Q8TEB1 546 aa16.87■□□□□ 0.29
NEK3-204ENST00000552973 ATRNO75882 1429 aa16.87■□□□□ 0.29
NEK3-204ENST00000552973 HAP1P54257 671 aaPredicted RBP16.86■□□□□ 0.29
NEK3-204ENST00000552973 PMFBP1Q8TBY8 1022 aa16.86■□□□□ 0.29
NEK3-204ENST00000552973 CABLES1Q8TDN4 633 aa16.86■□□□□ 0.29
NEK3-204ENST00000552973 HIRIP3Q9BW71 556 aaPredicted RBP16.86■□□□□ 0.29
NEK3-204ENST00000552973 BCL9LQ86UU0 1499 aa16.86■□□□□ 0.29
NEK3-204ENST00000552973 PSME1Q06323 249 aa16.85■□□□□ 0.29
NEK3-204ENST00000552973 COL22A1Q8NFW1 1626 aaPredicted RBP16.85■□□□□ 0.29
NEK3-204ENST00000552973 GJD4Q96KN9 370 aaPredicted RBP16.84■□□□□ 0.29
NEK3-204ENST00000552973 KNDC1Q76NI1 1749 aa16.84■□□□□ 0.29
NEK3-204ENST00000552973 ATAD2Q6PL18 1390 aa16.82■□□□□ 0.28
NEK3-204ENST00000552973 MINK1Q8N4C8 1332 aaPredicted RBP16.82■□□□□ 0.28
NEK3-204ENST00000552973 UNC5CLQ8IV45 518 aa16.82■□□□□ 0.28
NEK3-204ENST00000552973 FMN2Q9NZ56 1722 aa16.82■□□□□ 0.28
NEK3-204ENST00000552973 TNS3Q68CZ2 1445 aa16.79■□□□□ 0.28
NEK3-204ENST00000552973 ADGRB1O14514 1584 aa16.77■□□□□ 0.28
NEK3-204ENST00000552973 PRR36Q9H6K5 1346 aa16.77■□□□□ 0.28
NEK3-204ENST00000552973 HRCP23327 699 aa16.77■□□□□ 0.28
NEK3-204ENST00000552973 CCDC9Q9Y3X0 531 aaKnown RBP16.77■□□□□ 0.28
NEK3-204ENST00000552973 KIF1AQ12756 1690 aa16.77■□□□□ 0.28
NEK3-204ENST00000552973 SBNO1A3KN83 1393 aa16.77■□□□□ 0.27
NEK3-204ENST00000552973 SLIT2O94813 1529 aa16.76■□□□□ 0.27
NEK3-204ENST00000552973 DLC1Q96QB1 1528 aa16.76■□□□□ 0.27
NEK3-204ENST00000552973 WASLO00401 505 aaPredicted RBP16.76■□□□□ 0.27
NEK3-204ENST00000552973 FAM83GA6ND36 823 aa16.75■□□□□ 0.27
NEK3-204ENST00000552973 ANKARQ7Z5J8 1434 aa16.75■□□□□ 0.27
NEK3-204ENST00000552973 RALGAPBQ86X10 1494 aa16.74■□□□□ 0.27
NEK3-204ENST00000552973 NGDNQ8NEJ9 315 aaKnown RBP16.74■□□□□ 0.27
NEK3-204ENST00000552973 ARHGEF10O15013 1369 aa16.74■□□□□ 0.27
NEK3-204ENST00000552973 PAK3O75914 559 aaPredicted RBP16.73■□□□□ 0.27
NEK3-204ENST00000552973 VPS72Q15906 364 aa16.73■□□□□ 0.27
NEK3-204ENST00000552973 SEPT12Q8IYM1 358 aa16.73■□□□□ 0.27
NEK3-204ENST00000552973 STAC3Q96MF2 364 aa16.73■□□□□ 0.27
NEK3-204ENST00000552973 RGPD8O14715 1765 aaPredicted RBP16.72■□□□□ 0.27
NEK3-204ENST00000552973 GPRASP1Q5JY77 1395 aa16.72■□□□□ 0.27
NEK3-204ENST00000552973 USP32Q8NFA0 1604 aa16.71■□□□□ 0.27
NEK3-204ENST00000552973 GLI3P10071 1580 aa16.7■□□□□ 0.26
NEK3-204ENST00000552973 CCDC125Q86Z20 511 aa16.7■□□□□ 0.26
NEK3-204ENST00000552973 NUDT16Q96DE0 195 aaKnown RBP16.7■□□□□ 0.26
NEK3-204ENST00000552973 BTG4Q9NY30 223 aa16.7■□□□□ 0.26
NEK3-204ENST00000552973 EIF3AQ14152 1382 aaKnown RBP16.69■□□□□ 0.26
NEK3-204ENST00000552973 A0A0G2JS52 829 aa16.69■□□□□ 0.26
NEK3-204ENST00000552973 MYT1Q01538 1121 aa16.69■□□□□ 0.26
NEK3-204ENST00000552973 ZRANB1Q9UGI0 708 aa16.69■□□□□ 0.26
NEK3-204ENST00000552973 MARF1Q9Y4F3 1742 aaKnown RBP16.69■□□□□ 0.26
NEK3-204ENST00000552973 NBPF1Q3BBV0 1214 aa16.68■□□□□ 0.26
NEK3-204ENST00000552973 CDK19Q9BWU1 502 aa16.68■□□□□ 0.26
NEK3-204ENST00000552973 ADGRB2O60241 1585 aa16.68■□□□□ 0.26
NEK3-204ENST00000552973 TULP4Q9NRJ4 1543 aa16.67■□□□□ 0.26
NEK3-204ENST00000552973 DEFB132Q7Z7B7 95 aa16.67■□□□□ 0.26
NEK3-204ENST00000552973 ONECUT3O60422 494 aaPredicted RBP16.66■□□□□ 0.26
NEK3-204ENST00000552973 FAM98CQ17RN3 349 aaKnown RBP16.66■□□□□ 0.26
NEK3-204ENST00000552973 NUTM2GQ5VZR2 741 aa16.66■□□□□ 0.26
NEK3-204ENST00000552973 KRT27Q7Z3Y8 459 aa16.65■□□□□ 0.26
NEK3-204ENST00000552973 SF3B2Q13435 895 aaKnown RBP16.64■□□□□ 0.25
NEK3-204ENST00000552973 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.64■□□□□ 0.25
NEK3-204ENST00000552973 PRDM11Q9NQV5 511 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms