RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 CDCA8Q53HL2 280 aa13.59□□□□□ -0.23
TMEM116-216ENST00000552800 CFAP70Q5T0N1 1121 aa13.59□□□□□ -0.23
TMEM116-216ENST00000552800 PRKRIP1Q9H875 184 aaPredicted RBP13.59□□□□□ -0.23
TMEM116-216ENST00000552800 A2ML1A8K2U0 1454 aa13.59□□□□□ -0.23
TMEM116-216ENST00000552800 PLCD3Q8N3E9 789 aa13.57□□□□□ -0.24
TMEM116-216ENST00000552800 FARP1Q9Y4F1 1045 aaPredicted RBP13.57□□□□□ -0.24
TMEM116-216ENST00000552800 NLRP1Q9C000 1473 aa13.55□□□□□ -0.24
TMEM116-216ENST00000552800 MYO5BQ9ULV0 1848 aa13.55□□□□□ -0.24
TMEM116-216ENST00000552800 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.55□□□□□ -0.24
TMEM116-216ENST00000552800 POTEMA6NI47 508 aa13.54□□□□□ -0.24
TMEM116-216ENST00000552800 HDGFP51858 240 aaKnown RBP13.54□□□□□ -0.24
TMEM116-216ENST00000552800 SIRT1Q96EB6 747 aa13.54□□□□□ -0.24
TMEM116-216ENST00000552800 OTUD5Q96G74 571 aa13.54□□□□□ -0.24
TMEM116-216ENST00000552800 ESF1Q9H501 851 aaKnown RBP13.53□□□□□ -0.24
TMEM116-216ENST00000552800 DISP3Q9P2K9 1392 aa13.53□□□□□ -0.24
TMEM116-216ENST00000552800 NPC1L1Q9UHC9 1359 aa13.53□□□□□ -0.24
TMEM116-216ENST00000552800 CENPBP07199 599 aaPredicted RBP13.52□□□□□ -0.25
TMEM116-216ENST00000552800 TNRQ92752 1358 aa13.52□□□□□ -0.25
TMEM116-216ENST00000552800 RALBP1Q15311 655 aa13.51□□□□□ -0.25
TMEM116-216ENST00000552800 CHGAP10645 457 aaKnown RBP13.5□□□□□ -0.25
TMEM116-216ENST00000552800 ALKQ9UM73 1620 aa13.5□□□□□ -0.25
TMEM116-216ENST00000552800 DLC1Q96QB1 1528 aa13.49□□□□□ -0.25
TMEM116-216ENST00000552800 RIMS2Q9UQ26 1411 aa13.49□□□□□ -0.25
TMEM116-216ENST00000552800 IFNLR1Q8IU57 520 aaPredicted RBP13.49□□□□□ -0.25
TMEM116-216ENST00000552800 UBR1Q8IWV7 1749 aa13.49□□□□□ -0.25
TMEM116-216ENST00000552800 ARHGAP23Q9P227 1491 aa13.48□□□□□ -0.25
TMEM116-216ENST00000552800 ABCC11Q96J66 1382 aa13.48□□□□□ -0.25
TMEM116-216ENST00000552800 SETD1AO15047 1707 aaKnown RBP13.48□□□□□ -0.25
TMEM116-216ENST00000552800 CENPJQ9HC77 1338 aaPredicted RBP13.48□□□□□ -0.25
TMEM116-216ENST00000552800 C3P01024 1663 aa13.48□□□□□ -0.25
TMEM116-216ENST00000552800 CREBZFQ9NS37 354 aa13.48□□□□□ -0.25
TMEM116-216ENST00000552800 SETD1BQ9UPS6 1966 aaKnown RBP13.48□□□□□ -0.25
TMEM116-216ENST00000552800 TMEM2Q9UHN6 1383 aa13.47□□□□□ -0.25
TMEM116-216ENST00000552800 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
TMEM116-216ENST00000552800 MLECQ14165 292 aa13.47□□□□□ -0.25
TMEM116-216ENST00000552800 POTEGQ6S5H5 508 aa13.47□□□□□ -0.25
TMEM116-216ENST00000552800 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
TMEM116-216ENST00000552800 SLIT1O75093 1534 aa13.47□□□□□ -0.25
TMEM116-216ENST00000552800 ASXL1Q8IXJ9 1541 aa13.47□□□□□ -0.25
TMEM116-216ENST00000552800 INSRP06213 1382 aa13.46□□□□□ -0.25
TMEM116-216ENST00000552800 PARD3Q8TEW0 1356 aa13.46□□□□□ -0.25
TMEM116-216ENST00000552800 ARHGEF28Q8N1W1 1705 aaKnown RBP13.46□□□□□ -0.25
TMEM116-216ENST00000552800 MED14O60244 1454 aa13.46□□□□□ -0.25
TMEM116-216ENST00000552800 ADAMTSL3P82987 1691 aa13.46□□□□□ -0.26
TMEM116-216ENST00000552800 FER1L4A9Z1Z3 1794 aa13.45□□□□□ -0.26
TMEM116-216ENST00000552800 NRXN3Q9Y4C0 1643 aa13.45□□□□□ -0.26
TMEM116-216ENST00000552800 TECPR2O15040 1411 aa13.45□□□□□ -0.26
TMEM116-216ENST00000552800 YTHDC2Q9H6S0 1430 aaKnown RBP13.45□□□□□ -0.26
TMEM116-216ENST00000552800 LRPPRCP42704 1394 aaKnown RBP13.45□□□□□ -0.26
TMEM116-216ENST00000552800 PTPRMP28827 1452 aa13.44□□□□□ -0.26
TMEM116-216ENST00000552800 KLHL34Q8N239 644 aa13.44□□□□□ -0.26
TMEM116-216ENST00000552800 PANK3Q9H999 370 aa13.43□□□□□ -0.26
TMEM116-216ENST00000552800 MYOM1P52179 1685 aa13.43□□□□□ -0.26
TMEM116-216ENST00000552800 BRD4O60885 1362 aaPredicted RBP13.43□□□□□ -0.26
TMEM116-216ENST00000552800 NINLQ9Y2I6 1382 aa13.43□□□□□ -0.26
TMEM116-216ENST00000552800 FAM135BQ49AJ0 1406 aa13.42□□□□□ -0.26
TMEM116-216ENST00000552800 TMEM132EQ6IEE7 984 aa13.42□□□□□ -0.26
TMEM116-216ENST00000552800 PLEKHG1Q9ULL1 1385 aa13.42□□□□□ -0.26
TMEM116-216ENST00000552800 QRICH2Q9H0J4 1663 aa13.41□□□□□ -0.26
TMEM116-216ENST00000552800 POTEB2H3BUK9 544 aa13.41□□□□□ -0.26
TMEM116-216ENST00000552800 AMER1Q5JTC6 1135 aaPredicted RBP13.41□□□□□ -0.26
TMEM116-216ENST00000552800 THEMISQ8N1K5 641 aaPredicted RBP13.41□□□□□ -0.26
TMEM116-216ENST00000552800 PCDH10Q9P2E7 1040 aa13.41□□□□□ -0.26
TMEM116-216ENST00000552800 TRAK1Q9UPV9 953 aa13.41□□□□□ -0.26
TMEM116-216ENST00000552800 KNDC1Q76NI1 1749 aa13.4□□□□□ -0.26
TMEM116-216ENST00000552800 EVC2Q86UK5 1308 aa13.39□□□□□ -0.27
TMEM116-216ENST00000552800 MYBBP1AQ9BQG0 1328 aaKnown RBP13.39□□□□□ -0.27
TMEM116-216ENST00000552800 PNISRQ8TF01 805 aaKnown RBP13.39□□□□□ -0.27
TMEM116-216ENST00000552800 TBX22Q9Y458 520 aa13.39□□□□□ -0.27
TMEM116-216ENST00000552800 ADAMTS13Q76LX8 1427 aa13.39□□□□□ -0.27
TMEM116-216ENST00000552800 NLRP13Q86W25 1043 aa13.37□□□□□ -0.27
TMEM116-216ENST00000552800 USP32Q8NFA0 1604 aa13.36□□□□□ -0.27
TMEM116-216ENST00000552800 PIK3R4Q99570 1358 aa13.36□□□□□ -0.27
TMEM116-216ENST00000552800 TULP4Q9NRJ4 1543 aa13.36□□□□□ -0.27
TMEM116-216ENST00000552800 LTKP29376 864 aa13.36□□□□□ -0.27
TMEM116-216ENST00000552800 CCDC184Q52MB2 194 aa13.36□□□□□ -0.27
TMEM116-216ENST00000552800 ZBTB47Q9UFB7 747 aaPredicted RBP13.36□□□□□ -0.27
TMEM116-216ENST00000552800 ZRANB1Q9UGI0 708 aa13.36□□□□□ -0.27
TMEM116-216ENST00000552800 CEBPAP49715 358 aaPredicted RBP13.35□□□□□ -0.27
TMEM116-216ENST00000552800 NUTM2DQ5VT03 806 aaPredicted RBP13.35□□□□□ -0.27
TMEM116-216ENST00000552800 KNSTRNQ9Y448 316 aa13.35□□□□□ -0.27
TMEM116-216ENST00000552800 DIP2AQ14689 1571 aa13.35□□□□□ -0.27
TMEM116-216ENST00000552800 ZNF142P52746 1687 aaPredicted RBP13.34□□□□□ -0.27
TMEM116-216ENST00000552800 ATAD2Q6PL18 1390 aa13.34□□□□□ -0.27
TMEM116-216ENST00000552800 MNX1P50219 401 aaPredicted RBP13.34□□□□□ -0.27
TMEM116-216ENST00000552800 CARD14Q9BXL6 1004 aa13.34□□□□□ -0.27
TMEM116-216ENST00000552800 EID1Q9Y6B2 187 aa13.34□□□□□ -0.27
TMEM116-216ENST00000552800 CPS1P31327 1500 aa13.34□□□□□ -0.27
TMEM116-216ENST00000552800 METP08581 1390 aa13.33□□□□□ -0.27
TMEM116-216ENST00000552800 GALR2O43603 387 aaPredicted RBP13.33□□□□□ -0.28
TMEM116-216ENST00000552800 MRS2Q9HD23 443 aa13.33□□□□□ -0.28
TMEM116-216ENST00000552800 ANKRD36BQ8N2N9 1353 aa13.32□□□□□ -0.28
TMEM116-216ENST00000552800 TXNDC2Q86VQ3 553 aa13.32□□□□□ -0.28
TMEM116-216ENST00000552800 PRAM1Q96QH2 718 aa13.32□□□□□ -0.28
TMEM116-216ENST00000552800 CEP170BQ9Y4F5 1589 aaPredicted RBP13.32□□□□□ -0.28
TMEM116-216ENST00000552800 NSD2O96028 1365 aa13.32□□□□□ -0.28
TMEM116-216ENST00000552800 SPOCK2Q92563 424 aa13.31□□□□□ -0.28
TMEM116-216ENST00000552800 POLR3GLQ9BT43 218 aa13.31□□□□□ -0.28
TMEM116-216ENST00000552800 RIMS1Q86UR5 1692 aaKnown RBP13.29□□□□□ -0.28
TMEM116-216ENST00000552800 TMC1Q8TDI8 760 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms