RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 STK26Q9P289 416 aa17.31■□□□□ 0.36
PRPF40B-212ENST00000551111 ADAMTS2O95450 1211 aa17.3■□□□□ 0.36
PRPF40B-212ENST00000551111 UPF1Q92900 1129 aaKnown RBP eCLIP17.3■□□□□ 0.36
PRPF40B-212ENST00000551111 PLEKHH1Q9ULM0 1364 aa17.29■□□□□ 0.36
PRPF40B-212ENST00000551111 NUTM2FA1L443 756 aa17.28■□□□□ 0.36
PRPF40B-212ENST00000551111 CDC42BPGQ6DT37 1551 aa17.28■□□□□ 0.36
PRPF40B-212ENST00000551111 KNDC1Q76NI1 1749 aa17.27■□□□□ 0.36
PRPF40B-212ENST00000551111 QTRT2Q9H974 415 aaKnown RBP17.27■□□□□ 0.36
PRPF40B-212ENST00000551111 XPCQ01831 940 aaPredicted RBP17.26■□□□□ 0.35
PRPF40B-212ENST00000551111 COL22A1Q8NFW1 1626 aaPredicted RBP17.25■□□□□ 0.35
PRPF40B-212ENST00000551111 MARF1Q9Y4F3 1742 aaKnown RBP17.25■□□□□ 0.35
PRPF40B-212ENST00000551111 RGS12O14924 1447 aa17.25■□□□□ 0.35
PRPF40B-212ENST00000551111 PIK3C2GO75747 1445 aa17.25■□□□□ 0.35
PRPF40B-212ENST00000551111 ESCO1Q5FWF5 840 aa17.25■□□□□ 0.35
PRPF40B-212ENST00000551111 LRPPRCP42704 1394 aaKnown RBP17.25■□□□□ 0.35
PRPF40B-212ENST00000551111 PXDNQ92626 1479 aa17.24■□□□□ 0.35
PRPF40B-212ENST00000551111 FMN2Q9NZ56 1722 aa17.24■□□□□ 0.35
PRPF40B-212ENST00000551111 TECPR2O15040 1411 aa17.24■□□□□ 0.35
PRPF40B-212ENST00000551111 NGLY1Q96IV0 654 aa17.24■□□□□ 0.35
PRPF40B-212ENST00000551111 ANKRD30BQ9BXX2 1392 aa17.24■□□□□ 0.35
PRPF40B-212ENST00000551111 CDK12Q9NYV4 1490 aaPredicted RBP17.24■□□□□ 0.35
PRPF40B-212ENST00000551111 FOXO3O43524 673 aa17.23■□□□□ 0.35
PRPF40B-212ENST00000551111 ABCC11Q96J66 1382 aa17.22■□□□□ 0.35
PRPF40B-212ENST00000551111 YTHDC2Q9H6S0 1430 aaKnown RBP17.21■□□□□ 0.35
PRPF40B-212ENST00000551111 MYOM2P54296 1465 aa17.2■□□□□ 0.34
PRPF40B-212ENST00000551111 RBM6P78332 1123 aaKnown RBP17.2■□□□□ 0.34
PRPF40B-212ENST00000551111 CFAP70Q5T0N1 1121 aa17.2■□□□□ 0.34
PRPF40B-212ENST00000551111 C14orf93Q9H972 538 aaKnown RBP17.19■□□□□ 0.34
PRPF40B-212ENST00000551111 NPHP3Q7Z494 1330 aa17.19■□□□□ 0.34
PRPF40B-212ENST00000551111 NRXN1Q9ULB1 1477 aa17.18■□□□□ 0.34
PRPF40B-212ENST00000551111 RAB3GAP2Q9H2M9 1393 aa17.18■□□□□ 0.34
PRPF40B-212ENST00000551111 USP21Q9UK80 565 aa17.18■□□□□ 0.34
PRPF40B-212ENST00000551111 FNBP4Q8N3X1 1017 aaPredicted RBP17.17■□□□□ 0.34
PRPF40B-212ENST00000551111 SAFB2Q14151 953 aaKnown RBP eCLIP17.16■□□□□ 0.34
PRPF40B-212ENST00000551111 BCL9LQ86UU0 1499 aa17.15■□□□□ 0.34
PRPF40B-212ENST00000551111 ATRNO75882 1429 aa17.14■□□□□ 0.33
PRPF40B-212ENST00000551111 KIF1AQ12756 1690 aa17.14■□□□□ 0.33
PRPF40B-212ENST00000551111 EP400Q96L91 3159 aa17.14■□□□□ 0.33
PRPF40B-212ENST00000551111 USP32Q8NFA0 1604 aa17.14■□□□□ 0.33
PRPF40B-212ENST00000551111 SIRT1Q96EB6 747 aa17.12■□□□□ 0.33
PRPF40B-212ENST00000551111 PRAM1Q96QH2 718 aa17.12■□□□□ 0.33
PRPF40B-212ENST00000551111 TRPC5Q9UL62 973 aaPredicted RBP17.12■□□□□ 0.33
PRPF40B-212ENST00000551111 SPATA31A3Q5VYP0 1347 aa17.12■□□□□ 0.33
PRPF40B-212ENST00000551111 KRT28Q7Z3Y7 464 aa17.11■□□□□ 0.33
PRPF40B-212ENST00000551111 BRWD3Q6RI45 1802 aa17.11■□□□□ 0.33
PRPF40B-212ENST00000551111 DHX57Q6P158 1386 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-212ENST00000551111 PLEKHG5O94827 1062 aa17.1■□□□□ 0.33
PRPF40B-212ENST00000551111 ADGRB1O14514 1584 aa17.1■□□□□ 0.33
PRPF40B-212ENST00000551111 ABCA3Q99758 1704 aa17.1■□□□□ 0.33
PRPF40B-212ENST00000551111 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.1■□□□□ 0.33
PRPF40B-212ENST00000551111 CABLES1Q8TDN4 633 aa17.09■□□□□ 0.33
PRPF40B-212ENST00000551111 PHF8Q9UPP1 1060 aa17.09■□□□□ 0.33
PRPF40B-212ENST00000551111 KDM2AQ9Y2K7 1162 aa17.08■□□□□ 0.32
PRPF40B-212ENST00000551111 GLI3P10071 1580 aa17.07■□□□□ 0.32
PRPF40B-212ENST00000551111 HIRIP3Q9BW71 556 aaPredicted RBP17.07■□□□□ 0.32
PRPF40B-212ENST00000551111 TRAK1Q9UPV9 953 aa17.07■□□□□ 0.32
PRPF40B-212ENST00000551111 SLIT2O94813 1529 aa17.06■□□□□ 0.32
PRPF40B-212ENST00000551111 DLC1Q96QB1 1528 aa17.06■□□□□ 0.32
PRPF40B-212ENST00000551111 PMFBP1Q8TBY8 1022 aa17.06■□□□□ 0.32
PRPF40B-212ENST00000551111 TRPM3Q9HCF6 1732 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-212ENST00000551111 PLCH1Q4KWH8 1693 aa17.05■□□□□ 0.32
PRPF40B-212ENST00000551111 GJD4Q96KN9 370 aaPredicted RBP17.05■□□□□ 0.32
PRPF40B-212ENST00000551111 TNS3Q68CZ2 1445 aa17.04■□□□□ 0.32
PRPF40B-212ENST00000551111 ADGRB2O60241 1585 aa17.04■□□□□ 0.32
PRPF40B-212ENST00000551111 DCAF11Q8TEB1 546 aa17.04■□□□□ 0.32
PRPF40B-212ENST00000551111 POGKQ9P215 609 aa17.04■□□□□ 0.32
PRPF40B-212ENST00000551111 ATAD2Q6PL18 1390 aa17.03■□□□□ 0.32
PRPF40B-212ENST00000551111 MINK1Q8N4C8 1332 aaPredicted RBP17.03■□□□□ 0.32
PRPF40B-212ENST00000551111 PRR36Q9H6K5 1346 aa17.03■□□□□ 0.32
PRPF40B-212ENST00000551111 ACIN1Q9UKV3 1341 aaKnown RBP17.03■□□□□ 0.32
PRPF40B-212ENST00000551111 RALGAPBQ86X10 1494 aa17.03■□□□□ 0.32
PRPF40B-212ENST00000551111 ARHGEF28Q8N1W1 1705 aaKnown RBP17.02■□□□□ 0.32
PRPF40B-212ENST00000551111 LMOD2Q6P5Q4 547 aa17.02■□□□□ 0.32
PRPF40B-212ENST00000551111 UNC5CLQ8IV45 518 aa17.02■□□□□ 0.32
PRPF40B-212ENST00000551111 SRCAPQ6ZRS2 3230 aa17.02■□□□□ 0.31
PRPF40B-212ENST00000551111 ALS2Q96Q42 1657 aa17.01■□□□□ 0.31
PRPF40B-212ENST00000551111 PSME1Q06323 249 aa17.01■□□□□ 0.31
PRPF40B-212ENST00000551111 NWD2Q9ULI1 1742 aa17■□□□□ 0.31
PRPF40B-212ENST00000551111 SBNO1A3KN83 1393 aa17■□□□□ 0.31
PRPF40B-212ENST00000551111 CRYBG1Q9Y4K1 1723 aa16.99■□□□□ 0.31
PRPF40B-212ENST00000551111 ANKARQ7Z5J8 1434 aa16.98■□□□□ 0.31
PRPF40B-212ENST00000551111 FAM83GA6ND36 823 aa16.98■□□□□ 0.31
PRPF40B-212ENST00000551111 NRAPQ86VF7 1730 aa16.98■□□□□ 0.31
PRPF40B-212ENST00000551111 HAP1P54257 671 aaPredicted RBP16.97■□□□□ 0.31
PRPF40B-212ENST00000551111 TULP4Q9NRJ4 1543 aa16.96■□□□□ 0.31
PRPF40B-212ENST00000551111 WASLO00401 505 aaPredicted RBP16.95■□□□□ 0.3
PRPF40B-212ENST00000551111 ARHGEF10O15013 1369 aa16.94■□□□□ 0.3
PRPF40B-212ENST00000551111 HRCP23327 699 aa16.94■□□□□ 0.3
PRPF40B-212ENST00000551111 VPS72Q15906 364 aa16.94■□□□□ 0.3
PRPF40B-212ENST00000551111 SEPT12Q8IYM1 358 aa16.93■□□□□ 0.3
PRPF40B-212ENST00000551111 ITSN1Q15811 1721 aa16.93■□□□□ 0.3
PRPF40B-212ENST00000551111 CCDC9Q9Y3X0 531 aaKnown RBP16.92■□□□□ 0.3
PRPF40B-212ENST00000551111 COL14A1Q05707 1796 aaKnown RBP16.91■□□□□ 0.3
PRPF40B-212ENST00000551111 ATP7BP35670 1465 aa16.91■□□□□ 0.3
PRPF40B-212ENST00000551111 ONECUT3O60422 494 aaPredicted RBP16.9■□□□□ 0.3
PRPF40B-212ENST00000551111 NBPF1Q3BBV0 1214 aa16.9■□□□□ 0.3
PRPF40B-212ENST00000551111 DEFB132Q7Z7B7 95 aa16.9■□□□□ 0.3
PRPF40B-212ENST00000551111 NGDNQ8NEJ9 315 aaKnown RBP16.9■□□□□ 0.3
PRPF40B-212ENST00000551111 GPRASP1Q5JY77 1395 aa16.89■□□□□ 0.3
PRPF40B-212ENST00000551111 TOPAZ1Q8N9V7 1692 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms