RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 NUTM2AQ8IVF1 878 aaPredicted RBP25.85■■□□□ 1.73
CHMP1A-205ENST00000548650 ORAI2Q96SN7 254 aa25.85■■□□□ 1.73
CHMP1A-205ENST00000548650 ZNF772Q68DY9 489 aaPredicted RBP25.84■■□□□ 1.73
CHMP1A-205ENST00000548650 FMN2Q9NZ56 1722 aa25.84■■□□□ 1.73
CHMP1A-205ENST00000548650 COL22A1Q8NFW1 1626 aaPredicted RBP25.84■■□□□ 1.73
CHMP1A-205ENST00000548650 ABCC11Q96J66 1382 aa25.83■■□□□ 1.73
CHMP1A-205ENST00000548650 SOS2Q07890 1332 aaPredicted RBP25.83■■□□□ 1.73
CHMP1A-205ENST00000548650 YTHDC2Q9H6S0 1430 aaKnown RBP25.82■■□□□ 1.72
CHMP1A-205ENST00000548650 PLEKHH1Q9ULM0 1364 aa25.82■■□□□ 1.72
CHMP1A-205ENST00000548650 STK26Q9P289 416 aa25.8■■□□□ 1.72
CHMP1A-205ENST00000548650 PXDNQ92626 1479 aa25.79■■□□□ 1.72
CHMP1A-205ENST00000548650 TMEM132EQ6IEE7 984 aa25.79■■□□□ 1.72
CHMP1A-205ENST00000548650 WAPLQ7Z5K2 1190 aa25.78■■□□□ 1.72
CHMP1A-205ENST00000548650 AFF2P51816 1311 aa25.78■■□□□ 1.72
CHMP1A-205ENST00000548650 CDK12Q9NYV4 1490 aaPredicted RBP25.77■■□□□ 1.72
CHMP1A-205ENST00000548650 KIF1AQ12756 1690 aa25.77■■□□□ 1.72
CHMP1A-205ENST00000548650 C14orf93Q9H972 538 aaKnown RBP25.74■■□□□ 1.71
CHMP1A-205ENST00000548650 MARF1Q9Y4F3 1742 aaKnown RBP25.72■■□□□ 1.71
CHMP1A-205ENST00000548650 NPHP3Q7Z494 1330 aa25.72■■□□□ 1.71
CHMP1A-205ENST00000548650 C8orf37Q96NL8 207 aa25.72■■□□□ 1.71
CHMP1A-205ENST00000548650 ADGRB1O14514 1584 aa25.72■■□□□ 1.71
CHMP1A-205ENST00000548650 RGPD8O14715 1765 aaPredicted RBP25.72■■□□□ 1.71
CHMP1A-205ENST00000548650 ESCO1Q5FWF5 840 aa25.71■■□□□ 1.71
CHMP1A-205ENST00000548650 DLC1Q96QB1 1528 aa25.71■■□□□ 1.71
CHMP1A-205ENST00000548650 CFAP70Q5T0N1 1121 aa25.7■■□□□ 1.7
CHMP1A-205ENST00000548650 RXRBP28702 533 aa25.69■■□□□ 1.7
CHMP1A-205ENST00000548650 ADGRB2O60241 1585 aa25.69■■□□□ 1.7
CHMP1A-205ENST00000548650 DHX57Q6P158 1386 aaKnown RBP25.68■■□□□ 1.7
CHMP1A-205ENST00000548650 NUTM2FA1L443 756 aa25.67■■□□□ 1.7
CHMP1A-205ENST00000548650 RGS12O14924 1447 aa25.67■■□□□ 1.7
CHMP1A-205ENST00000548650 ADAMTS2O95450 1211 aa25.67■■□□□ 1.7
CHMP1A-205ENST00000548650 SIRT1Q96EB6 747 aa25.67■■□□□ 1.7
CHMP1A-205ENST00000548650 USP32Q8NFA0 1604 aa25.64■■□□□ 1.7
CHMP1A-205ENST00000548650 FOXO3O43524 673 aa25.64■■□□□ 1.7
CHMP1A-205ENST00000548650 XPCQ01831 940 aaPredicted RBP25.64■■□□□ 1.7
CHMP1A-205ENST00000548650 HRCP23327 699 aa25.61■■□□□ 1.69
CHMP1A-205ENST00000548650 NGLY1Q96IV0 654 aa25.61■■□□□ 1.69
CHMP1A-205ENST00000548650 PRAM1Q96QH2 718 aa25.6■■□□□ 1.69
CHMP1A-205ENST00000548650 RBM6P78332 1123 aaKnown RBP25.59■■□□□ 1.69
CHMP1A-205ENST00000548650 QTRT2Q9H974 415 aaKnown RBP25.59■■□□□ 1.69
CHMP1A-205ENST00000548650 ABCA3Q99758 1704 aa25.59■■□□□ 1.69
CHMP1A-205ENST00000548650 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.58■■□□□ 1.69
CHMP1A-205ENST00000548650 UPF1Q92900 1129 aaKnown RBP eCLIP25.58■■□□□ 1.69
CHMP1A-205ENST00000548650 ARHGEF28Q8N1W1 1705 aaKnown RBP25.57■■□□□ 1.68
CHMP1A-205ENST00000548650 ATRNO75882 1429 aa25.57■■□□□ 1.68
CHMP1A-205ENST00000548650 ANKARQ7Z5J8 1434 aa25.56■■□□□ 1.68
CHMP1A-205ENST00000548650 FNBP4Q8N3X1 1017 aaPredicted RBP25.56■■□□□ 1.68
CHMP1A-205ENST00000548650 SAFB2Q14151 953 aaKnown RBP eCLIP25.55■■□□□ 1.68
CHMP1A-205ENST00000548650 USP21Q9UK80 565 aa25.55■■□□□ 1.68
CHMP1A-205ENST00000548650 SPATA31A3Q5VYP0 1347 aa25.55■■□□□ 1.68
CHMP1A-205ENST00000548650 TNS3Q68CZ2 1445 aa25.54■■□□□ 1.68
CHMP1A-205ENST00000548650 BCL9LQ86UU0 1499 aa25.53■■□□□ 1.68
CHMP1A-205ENST00000548650 DCAF11Q8TEB1 546 aa25.53■■□□□ 1.68
CHMP1A-205ENST00000548650 PHF8Q9UPP1 1060 aa25.52■■□□□ 1.68
CHMP1A-205ENST00000548650 TRPM3Q9HCF6 1732 aaPredicted RBP25.51■■□□□ 1.68
CHMP1A-205ENST00000548650 POGKQ9P215 609 aa25.51■■□□□ 1.67
CHMP1A-205ENST00000548650 TRPC5Q9UL62 973 aaPredicted RBP25.51■■□□□ 1.67
CHMP1A-205ENST00000548650 KDM2AQ9Y2K7 1162 aa25.51■■□□□ 1.67
CHMP1A-205ENST00000548650 TULP4Q9NRJ4 1543 aa25.51■■□□□ 1.67
CHMP1A-205ENST00000548650 KIAA1210Q9ULL0 1709 aa25.49■■□□□ 1.67
CHMP1A-205ENST00000548650 KRT28Q7Z3Y7 464 aa25.49■■□□□ 1.67
CHMP1A-205ENST00000548650 TRAK1Q9UPV9 953 aa25.49■■□□□ 1.67
CHMP1A-205ENST00000548650 PLCH1Q4KWH8 1693 aa25.48■■□□□ 1.67
CHMP1A-205ENST00000548650 SLIT2O94813 1529 aa25.48■■□□□ 1.67
CHMP1A-205ENST00000548650 STAC3Q96MF2 364 aa25.48■■□□□ 1.67
CHMP1A-205ENST00000548650 SBNO1A3KN83 1393 aa25.47■■□□□ 1.67
CHMP1A-205ENST00000548650 ALS2Q96Q42 1657 aa25.46■■□□□ 1.67
CHMP1A-205ENST00000548650 ITSN1Q15811 1721 aa25.46■■□□□ 1.67
CHMP1A-205ENST00000548650 EIF3AQ14152 1382 aaKnown RBP25.45■■□□□ 1.67
CHMP1A-205ENST00000548650 NWD2Q9ULI1 1742 aa25.45■■□□□ 1.66
CHMP1A-205ENST00000548650 GLI3P10071 1580 aa25.44■■□□□ 1.66
CHMP1A-205ENST00000548650 HIRIP3Q9BW71 556 aaPredicted RBP25.44■■□□□ 1.66
CHMP1A-205ENST00000548650 MINK1Q8N4C8 1332 aaPredicted RBP25.43■■□□□ 1.66
CHMP1A-205ENST00000548650 PRR36Q9H6K5 1346 aa25.43■■□□□ 1.66
CHMP1A-205ENST00000548650 ARHGEF10O15013 1369 aa25.43■■□□□ 1.66
CHMP1A-205ENST00000548650 PSME1Q06323 249 aa25.42■■□□□ 1.66
CHMP1A-205ENST00000548650 CRYBG1Q9Y4K1 1723 aa25.42■■□□□ 1.66
CHMP1A-205ENST00000548650 ATP7BP35670 1465 aa25.41■■□□□ 1.66
CHMP1A-205ENST00000548650 TOPAZ1Q8N9V7 1692 aa25.4■■□□□ 1.66
CHMP1A-205ENST00000548650 PMFBP1Q8TBY8 1022 aa25.4■■□□□ 1.66
CHMP1A-205ENST00000548650 ATAD2Q6PL18 1390 aa25.4■■□□□ 1.66
CHMP1A-205ENST00000548650 RALGAPBQ86X10 1494 aa25.39■■□□□ 1.65
CHMP1A-205ENST00000548650 NRAPQ86VF7 1730 aa25.37■■□□□ 1.65
CHMP1A-205ENST00000548650 WASLO00401 505 aaPredicted RBP25.37■■□□□ 1.65
CHMP1A-205ENST00000548650 CABLES1Q8TDN4 633 aa25.37■■□□□ 1.65
CHMP1A-205ENST00000548650 UNC5CLQ8IV45 518 aa25.36■■□□□ 1.65
CHMP1A-205ENST00000548650 GJD4Q96KN9 370 aaPredicted RBP25.36■■□□□ 1.65
CHMP1A-205ENST00000548650 BRWD3Q6RI45 1802 aa25.35■■□□□ 1.65
CHMP1A-205ENST00000548650 EP400Q96L91 3159 aa25.34■■□□□ 1.65
CHMP1A-205ENST00000548650 GPRASP1Q5JY77 1395 aa25.33■■□□□ 1.65
CHMP1A-205ENST00000548650 HAP1P54257 671 aaPredicted RBP25.33■■□□□ 1.65
CHMP1A-205ENST00000548650 LMOD2Q6P5Q4 547 aa25.32■■□□□ 1.64
CHMP1A-205ENST00000548650 COL14A1Q05707 1796 aaKnown RBP25.31■■□□□ 1.64
CHMP1A-205ENST00000548650 PLEKHG5O94827 1062 aa25.3■■□□□ 1.64
CHMP1A-205ENST00000548650 PHRF1Q9P1Y6 1649 aaKnown RBP25.3■■□□□ 1.64
CHMP1A-205ENST00000548650 QRICH2Q9H0J4 1663 aa25.27■■□□□ 1.64
CHMP1A-205ENST00000548650 VPS72Q15906 364 aa25.26■■□□□ 1.63
CHMP1A-205ENST00000548650 NUDT16Q96DE0 195 aaKnown RBP25.25■■□□□ 1.63
CHMP1A-205ENST00000548650 NBPF1Q3BBV0 1214 aa25.24■■□□□ 1.63
CHMP1A-205ENST00000548650 NGDNQ8NEJ9 315 aaKnown RBP25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms