RNA–Protein interactions for RNA: ENST00000544610.1

CDCA3-209, Transcript of cell division cycle associated 3, humanhuman

TSL 3

Gene CDCA3, Length 624 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-209ENST00000544610 AMOTL2Q9Y2J4 779 aa9.83□□□□□ -0.84
CDCA3-209ENST00000544610 ASXL1Q8IXJ9 1541 aa9.82□□□□□ -0.84
CDCA3-209ENST00000544610 PITPNM1O00562 1244 aa9.82□□□□□ -0.84
CDCA3-209ENST00000544610 BRINP3Q76B58 766 aa9.82□□□□□ -0.84
CDCA3-209ENST00000544610 PPARGC1BQ86YN6 1023 aaKnown RBP9.82□□□□□ -0.84
CDCA3-209ENST00000544610 ZNF772Q68DY9 489 aaPredicted RBP9.81□□□□□ -0.84
CDCA3-209ENST00000544610 NHSL1Q5SYE7 1610 aa9.81□□□□□ -0.84
CDCA3-209ENST00000544610 NEXMIFQ5QGS0 1516 aa9.81□□□□□ -0.84
CDCA3-209ENST00000544610 MST1RQ04912 1400 aa9.81□□□□□ -0.84
CDCA3-209ENST00000544610 SETD5Q9C0A6 1442 aa9.81□□□□□ -0.84
CDCA3-209ENST00000544610 METP08581 1390 aa9.8□□□□□ -0.84
CDCA3-209ENST00000544610 ITGAEP38570 1179 aa9.8□□□□□ -0.84
CDCA3-209ENST00000544610 MEX3CQ5U5Q3 659 aaKnown RBP9.8□□□□□ -0.84
CDCA3-209ENST00000544610 CLTCL1P53675 1640 aa9.8□□□□□ -0.84
CDCA3-209ENST00000544610 PCGF6Q9BYE7 350 aa9.79□□□□□ -0.84
CDCA3-209ENST00000544610 ADGRL3Q9HAR2 1447 aa9.79□□□□□ -0.84
CDCA3-209ENST00000544610 ZNF326Q5BKZ1 582 aaKnown RBP9.78□□□□□ -0.84
CDCA3-209ENST00000544610 NALCNQ8IZF0 1738 aa9.78□□□□□ -0.84
CDCA3-209ENST00000544610 CDK12Q9NYV4 1490 aaPredicted RBP9.78□□□□□ -0.84
CDCA3-209ENST00000544610 GABBR2O75899 941 aa9.77□□□□□ -0.85
CDCA3-209ENST00000544610 HFM1A2PYH4 1435 aa9.76□□□□□ -0.85
CDCA3-209ENST00000544610 NAIPQ13075 1403 aa9.76□□□□□ -0.85
CDCA3-209ENST00000544610 PTCH1Q13635 1447 aa9.76□□□□□ -0.85
CDCA3-209ENST00000544610 PRAG1Q86YV5 1406 aa9.76□□□□□ -0.85
CDCA3-209ENST00000544610 UPF1Q92900 1129 aaKnown RBP eCLIP9.76□□□□□ -0.85
CDCA3-209ENST00000544610 LAMC1P11047 1609 aa9.75□□□□□ -0.85
CDCA3-209ENST00000544610 NUTM2BA6NNL0 878 aaPredicted RBP9.75□□□□□ -0.85
CDCA3-209ENST00000544610 NUTM2EB1AL46 878 aaPredicted RBP9.75□□□□□ -0.85
CDCA3-209ENST00000544610 RXRBP28702 533 aa9.75□□□□□ -0.85
CDCA3-209ENST00000544610 NUTM2AQ8IVF1 878 aaPredicted RBP9.75□□□□□ -0.85
CDCA3-209ENST00000544610 TRIM52Q96A61 297 aa9.75□□□□□ -0.85
CDCA3-209ENST00000544610 LRRC59Q96AG4 307 aaKnown RBP9.75□□□□□ -0.85
CDCA3-209ENST00000544610 PNPLA6Q8IY17 1366 aa9.75□□□□□ -0.85
CDCA3-209ENST00000544610 C1orf167Q5SNV9 1468 aa9.74□□□□□ -0.85
CDCA3-209ENST00000544610 KIF1BO60333 1816 aa9.74□□□□□ -0.85
CDCA3-209ENST00000544610 AFF2P51816 1311 aa9.74□□□□□ -0.85
CDCA3-209ENST00000544610 ROBO2Q9HCK4 1378 aa9.73□□□□□ -0.85
CDCA3-209ENST00000544610 DDX17Q92841 729 aaKnown RBP9.72□□□□□ -0.85
CDCA3-209ENST00000544610 RGS12O14924 1447 aa9.72□□□□□ -0.85
CDCA3-209ENST00000544610 VGFO15240 615 aaPredicted RBP9.71□□□□□ -0.86
CDCA3-209ENST00000544610 C8orf37Q96NL8 207 aa9.71□□□□□ -0.86
CDCA3-209ENST00000544610 CLSPNQ9HAW4 1339 aa9.71□□□□□ -0.86
CDCA3-209ENST00000544610 SOS2Q07890 1332 aaPredicted RBP9.7□□□□□ -0.86
CDCA3-209ENST00000544610 RPGRIP1LQ68CZ1 1315 aa9.7□□□□□ -0.86
CDCA3-209ENST00000544610 PPLO60437 1756 aa9.7□□□□□ -0.86
CDCA3-209ENST00000544610 RBM6P78332 1123 aaKnown RBP9.69□□□□□ -0.86
CDCA3-209ENST00000544610 CDC42BPGQ6DT37 1551 aa9.69□□□□□ -0.86
CDCA3-209ENST00000544610 COL22A1Q8NFW1 1626 aaPredicted RBP9.69□□□□□ -0.86
CDCA3-209ENST00000544610 ORAI2Q96SN7 254 aa9.68□□□□□ -0.86
CDCA3-209ENST00000544610 QTRT2Q9H974 415 aaKnown RBP9.68□□□□□ -0.86
CDCA3-209ENST00000544610 C19orf67A6NJJ6 358 aa9.67□□□□□ -0.86
CDCA3-209ENST00000544610 MYOM2P54296 1465 aa9.66□□□□□ -0.86
CDCA3-209ENST00000544610 TECPR2O15040 1411 aa9.66□□□□□ -0.86
CDCA3-209ENST00000544610 ADAMTS2O95450 1211 aa9.66□□□□□ -0.86
CDCA3-209ENST00000544610 NGLY1Q96IV0 654 aa9.66□□□□□ -0.86
CDCA3-209ENST00000544610 ZBTB12Q9Y330 459 aaPredicted RBP9.66□□□□□ -0.86
CDCA3-209ENST00000544610 PXDNQ92626 1479 aa9.66□□□□□ -0.86
CDCA3-209ENST00000544610 FNBP4Q8N3X1 1017 aaPredicted RBP9.65□□□□□ -0.86
CDCA3-209ENST00000544610 ATF5Q9Y2D1 282 aaPredicted RBP9.65□□□□□ -0.86
CDCA3-209ENST00000544610 ATRNO75882 1429 aa9.65□□□□□ -0.87
CDCA3-209ENST00000544610 SPATA31E1Q6ZUB1 1445 aa9.65□□□□□ -0.87
CDCA3-209ENST00000544610 ATAD2Q6PL18 1390 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 RAB3GAP2Q9H2M9 1393 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 SRCAPQ6ZRS2 3230 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 NPHP3Q7Z494 1330 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 USP21Q9UK80 565 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 TRPC5Q9UL62 973 aaPredicted RBP9.64□□□□□ -0.87
CDCA3-209ENST00000544610 KNDC1Q76NI1 1749 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 IFT172Q9UG01 1749 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 EP400Q96L91 3159 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 CCDC144AA2RUR9 1427 aa9.64□□□□□ -0.87
CDCA3-209ENST00000544610 ADGRF5Q8IZF2 1346 aa9.63□□□□□ -0.87
CDCA3-209ENST00000544610 LRPPRCP42704 1394 aaKnown RBP9.63□□□□□ -0.87
CDCA3-209ENST00000544610 ANKRD30BQ9BXX2 1392 aa9.63□□□□□ -0.87
CDCA3-209ENST00000544610 BCL9LQ86UU0 1499 aa9.62□□□□□ -0.87
CDCA3-209ENST00000544610 ESCO1Q5FWF5 840 aa9.62□□□□□ -0.87
CDCA3-209ENST00000544610 PIK3C2GO75747 1445 aa9.62□□□□□ -0.87
CDCA3-209ENST00000544610 MARF1Q9Y4F3 1742 aaKnown RBP9.62□□□□□ -0.87
CDCA3-209ENST00000544610 ABCC11Q96J66 1382 aa9.62□□□□□ -0.87
CDCA3-209ENST00000544610 ZEB1P37275 1124 aaPredicted RBP9.61□□□□□ -0.87
CDCA3-209ENST00000544610 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.6□□□□□ -0.87
CDCA3-209ENST00000544610 FMN2Q9NZ56 1722 aa9.6□□□□□ -0.87
CDCA3-209ENST00000544610 FOXO3O43524 673 aa9.6□□□□□ -0.87
CDCA3-209ENST00000544610 KIF1AQ12756 1690 aa9.6□□□□□ -0.87
CDCA3-209ENST00000544610 PLEKHH1Q9ULM0 1364 aa9.6□□□□□ -0.87
CDCA3-209ENST00000544610 YTHDC2Q9H6S0 1430 aaKnown RBP9.59□□□□□ -0.87
CDCA3-209ENST00000544610 POTEMA6NI47 508 aa9.59□□□□□ -0.87
CDCA3-209ENST00000544610 WAPLQ7Z5K2 1190 aa9.59□□□□□ -0.87
CDCA3-209ENST00000544610 SLIT2O94813 1529 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 USP32Q8NFA0 1604 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 XPCQ01831 940 aaPredicted RBP9.58□□□□□ -0.88
CDCA3-209ENST00000544610 RGL3Q3MIN7 710 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 MPHOSPH9Q99550 1183 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 STK26Q9P289 416 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 PCDH10Q9P2E7 1040 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 DHX57Q6P158 1386 aaKnown RBP9.58□□□□□ -0.88
CDCA3-209ENST00000544610 NRXN1Q9ULB1 1477 aa9.58□□□□□ -0.88
CDCA3-209ENST00000544610 SPATA31A3Q5VYP0 1347 aa9.57□□□□□ -0.88
CDCA3-209ENST00000544610 NUTM2FA1L443 756 aa9.57□□□□□ -0.88
CDCA3-209ENST00000544610 PRKAR2AP13861 404 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms