RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 DLC1Q96QB1 1528 aa16.35■□□□□ 0.21
YBX3-213ENST00000542641 STRCP1A6NGW2 1772 aa16.35■□□□□ 0.21
YBX3-213ENST00000542641 USP47Q96K76 1375 aa16.35■□□□□ 0.21
YBX3-213ENST00000542641 EIF4G2P78344 907 aaKnown RBP eCLIP16.34■□□□□ 0.21
YBX3-213ENST00000542641 C14orf37Q86TY3 774 aa16.34■□□□□ 0.21
YBX3-213ENST00000542641 CENPJQ9HC77 1338 aaPredicted RBP16.34■□□□□ 0.21
YBX3-213ENST00000542641 TMEM94Q12767 1356 aa16.34■□□□□ 0.21
YBX3-213ENST00000542641 PLEKHH1Q9ULM0 1364 aa16.34■□□□□ 0.21
YBX3-213ENST00000542641 LRRC7Q96NW7 1537 aa16.33■□□□□ 0.2
YBX3-213ENST00000542641 LTBP4Q8N2S1 1624 aa16.33■□□□□ 0.2
YBX3-213ENST00000542641 KNDC1Q76NI1 1749 aa16.33■□□□□ 0.2
YBX3-213ENST00000542641 ST20-MTHFSA0A0A6YYL1 179 aa16.32■□□□□ 0.2
YBX3-213ENST00000542641 MINK1Q8N4C8 1332 aaPredicted RBP16.3■□□□□ 0.2
YBX3-213ENST00000542641 HSPA5P11021 654 aaKnown RBP16.3■□□□□ 0.2
YBX3-213ENST00000542641 ARHGEF28Q8N1W1 1705 aaKnown RBP16.3■□□□□ 0.2
YBX3-213ENST00000542641 NCOA3Q9Y6Q9 1424 aa16.29■□□□□ 0.2
YBX3-213ENST00000542641 HIRIP3Q9BW71 556 aaPredicted RBP16.29■□□□□ 0.2
YBX3-213ENST00000542641 C19orf44Q9H6X5 657 aa16.29■□□□□ 0.2
YBX3-213ENST00000542641 MSH6P52701 1360 aa16.26■□□□□ 0.19
YBX3-213ENST00000542641 SLC24A1O60721 1099 aa16.26■□□□□ 0.19
YBX3-213ENST00000542641 CERKQ8TCT0 537 aa16.26■□□□□ 0.19
YBX3-213ENST00000542641 ADGRL3Q9HAR2 1447 aa16.26■□□□□ 0.19
YBX3-213ENST00000542641 SLC4A2P04920 1241 aa16.25■□□□□ 0.19
YBX3-213ENST00000542641 ATF3P18847 181 aa16.25■□□□□ 0.19
YBX3-213ENST00000542641 TESK2Q96S53 571 aa16.25■□□□□ 0.19
YBX3-213ENST00000542641 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.25■□□□□ 0.19
YBX3-213ENST00000542641 SBNO2Q9Y2G9 1366 aa16.24■□□□□ 0.19
YBX3-213ENST00000542641 EVC2Q86UK5 1308 aa16.23■□□□□ 0.19
YBX3-213ENST00000542641 WASLO00401 505 aaPredicted RBP16.23■□□□□ 0.19
YBX3-213ENST00000542641 CADPS2Q86UW7 1296 aa16.23■□□□□ 0.19
YBX3-213ENST00000542641 CDK19Q9BWU1 502 aa16.23■□□□□ 0.19
YBX3-213ENST00000542641 QRICH2Q9H0J4 1663 aa16.23■□□□□ 0.19
YBX3-213ENST00000542641 TMF1P82094 1093 aa16.22■□□□□ 0.19
YBX3-213ENST00000542641 NUTM2FA1L443 756 aa16.21■□□□□ 0.19
YBX3-213ENST00000542641 SRPK2P78362 688 aaKnown RBP16.21■□□□□ 0.19
YBX3-213ENST00000542641 NALCNQ8IZF0 1738 aa16.21■□□□□ 0.19
YBX3-213ENST00000542641 XIRP1Q702N8 1843 aaKnown RBP16.21■□□□□ 0.19
YBX3-213ENST00000542641 DCCP43146 1447 aa16.2■□□□□ 0.18
YBX3-213ENST00000542641 CABP2Q9NPB3 220 aa16.19■□□□□ 0.18
YBX3-213ENST00000542641 ADGRB2O60241 1585 aa16.18■□□□□ 0.18
YBX3-213ENST00000542641 IQSEC2Q5JU85 1478 aa16.18■□□□□ 0.18
YBX3-213ENST00000542641 CDC42BPGQ6DT37 1551 aa16.17■□□□□ 0.18
YBX3-213ENST00000542641 DISP3Q9P2K9 1392 aa16.17■□□□□ 0.18
YBX3-213ENST00000542641 TOM1O60784 492 aa16.17■□□□□ 0.18
YBX3-213ENST00000542641 CDCA8Q53HL2 280 aa16.17■□□□□ 0.18
YBX3-213ENST00000542641 SLAIN2Q9P270 581 aa16.17■□□□□ 0.18
YBX3-213ENST00000542641 TULP4Q9NRJ4 1543 aa16.17■□□□□ 0.18
YBX3-213ENST00000542641 UBAP1LF5GYI3 381 aa16.16■□□□□ 0.18
YBX3-213ENST00000542641 NUDT16Q96DE0 195 aaKnown RBP16.16■□□□□ 0.18
YBX3-213ENST00000542641 PUS7Q96PZ0 661 aaKnown RBP16.15■□□□□ 0.18
YBX3-213ENST00000542641 C11orf95C9JLR9 678 aaPredicted RBP16.14■□□□□ 0.17
YBX3-213ENST00000542641 POLR3GLQ9BT43 218 aa16.14■□□□□ 0.17
YBX3-213ENST00000542641 FOXD4L1Q9NU39 408 aa16.14■□□□□ 0.17
YBX3-213ENST00000542641 PRR36Q9H6K5 1346 aa16.14■□□□□ 0.17
YBX3-213ENST00000542641 MST1RQ04912 1400 aa16.13■□□□□ 0.17
YBX3-213ENST00000542641 ESCO1Q5FWF5 840 aa16.13■□□□□ 0.17
YBX3-213ENST00000542641 CCDC61Q9Y6R9 512 aa16.13■□□□□ 0.17
YBX3-213ENST00000542641 ANKARQ7Z5J8 1434 aa16.12■□□□□ 0.17
YBX3-213ENST00000542641 C1orf167Q5SNV9 1468 aa16.12■□□□□ 0.17
YBX3-213ENST00000542641 FMN2Q9NZ56 1722 aa16.12■□□□□ 0.17
YBX3-213ENST00000542641 ORAI2Q96SN7 254 aa16.12■□□□□ 0.17
YBX3-213ENST00000542641 ATAD2Q6PL18 1390 aa16.12■□□□□ 0.17
YBX3-213ENST00000542641 PIP4K2BP78356 416 aa16.11■□□□□ 0.17
YBX3-213ENST00000542641 TMC1Q8TDI8 760 aa16.11■□□□□ 0.17
YBX3-213ENST00000542641 ATP7BP35670 1465 aa16.1■□□□□ 0.17
YBX3-213ENST00000542641 CABP1Q9NZU7 370 aa16.1■□□□□ 0.17
YBX3-213ENST00000542641 KIF7Q2M1P5 1343 aa16.1■□□□□ 0.17
YBX3-213ENST00000542641 BRINP3Q76B58 766 aa16.09■□□□□ 0.17
YBX3-213ENST00000542641 PMFBP1Q8TBY8 1022 aa16.09■□□□□ 0.17
YBX3-213ENST00000542641 PHF8Q9UPP1 1060 aa16.09■□□□□ 0.17
YBX3-213ENST00000542641 ZBTB22O15209 634 aa16.08■□□□□ 0.16
YBX3-213ENST00000542641 WASHC2AQ641Q2 1341 aa16.08■□□□□ 0.16
YBX3-213ENST00000542641 PPIP5K1Q6PFW1 1433 aa16.08■□□□□ 0.16
YBX3-213ENST00000542641 USP32Q8NFA0 1604 aa16.08■□□□□ 0.16
YBX3-213ENST00000542641 PLEKHG3A1L390 1219 aa16.07■□□□□ 0.16
YBX3-213ENST00000542641 ZNF316A6NFI3 1004 aaPredicted RBP16.07■□□□□ 0.16
YBX3-213ENST00000542641 SLC12A5Q9H2X9 1139 aa16.07■□□□□ 0.16
YBX3-213ENST00000542641 CCDC7Q96M83 1385 aa16.06■□□□□ 0.16
YBX3-213ENST00000542641 NGDNQ8NEJ9 315 aaKnown RBP16.06■□□□□ 0.16
YBX3-213ENST00000542641 FOXO3O43524 673 aa16.05■□□□□ 0.16
YBX3-213ENST00000542641 NINLQ9Y2I6 1382 aa16.04■□□□□ 0.16
YBX3-213ENST00000542641 ACEP12821 1306 aa16.04■□□□□ 0.16
YBX3-213ENST00000542641 PSME1Q06323 249 aa16.04■□□□□ 0.16
YBX3-213ENST00000542641 RNF39Q9H2S5 420 aa16.04■□□□□ 0.16
YBX3-213ENST00000542641 RGPD8O14715 1765 aaPredicted RBP16.03■□□□□ 0.16
YBX3-213ENST00000542641 TERF2IPQ9NYB0 399 aa16.03■□□□□ 0.16
YBX3-213ENST00000542641 HDGFL2Q7Z4V5 671 aaPredicted RBP16.02■□□□□ 0.16
YBX3-213ENST00000542641 DDX17Q92841 729 aaKnown RBP16.02■□□□□ 0.16
YBX3-213ENST00000542641 ZNF692Q9BU19 519 aaPredicted RBP16.02■□□□□ 0.16
YBX3-213ENST00000542641 ITSN1Q15811 1721 aa16.02■□□□□ 0.15
YBX3-213ENST00000542641 POLR3AO14802 1390 aaPredicted RBP16.01■□□□□ 0.15
YBX3-213ENST00000542641 NPHP3Q7Z494 1330 aa16.01■□□□□ 0.15
YBX3-213ENST00000542641 TOPAZ1Q8N9V7 1692 aa16.01■□□□□ 0.15
YBX3-213ENST00000542641 ROBO1Q9Y6N7 1651 aa16■□□□□ 0.15
YBX3-213ENST00000542641 XPCQ01831 940 aaPredicted RBP16■□□□□ 0.15
YBX3-213ENST00000542641 KRT28Q7Z3Y7 464 aa16■□□□□ 0.15
YBX3-213ENST00000542641 U3KPZ7 1027 aaPredicted RBP16■□□□□ 0.15
YBX3-213ENST00000542641 KIF1AQ12756 1690 aa15.99■□□□□ 0.15
YBX3-213ENST00000542641 PANK3Q9H999 370 aa15.99■□□□□ 0.15
YBX3-213ENST00000542641 CPSF1Q10570 1443 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms